Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA13	0	genome.wustl.edu	37	7	48308594	48308594	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	48308594	48308594	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.2023	p.P675T	0.993	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	56	0	0.00	30	12	28.57
ACAP2	0	genome.wustl.edu	37	3	195013077	195013077	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	195013077	195013077	C	T	SNP	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	missense	c.1870	p.E624K	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331	tier1	-	-	39	0	0.00	40	7	14.89
ADCK1	0	genome.wustl.edu	37	14	78392246	78392246	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	78392246	78392246	C	T	SNP	ADCK1	ENST00000238561	human	ensembl	74_37	+1	known	missense	c.1148	p.A383V	1.000	NULL	pfam_UbiB_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK1	HGNC	ENSG00000063761	tier1	-	-	60	0	0.00	48	4	7.69
AGBL5	0	genome.wustl.edu	37	2	27280243	27280243	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	27280243	27280243	G	A	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	silent	c.1608	p.G536	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693	tier1	-	-	46	0	0.00	30	7	18.92
AMER3	0	genome.wustl.edu	37	2	131520725	131520725	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	131520725	131520725	C	T	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	silent	c.1080	p.S360	0.043	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				30	0	0.00	20	3	13.04
ANKFN1	0	genome.wustl.edu	37	17	54450102	54450102	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	54450102	54450102	G	C	SNP	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	missense	c.706	p.G236R	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930	tier1	-	-	57	0	0.00	26	15	36.59
ANKRD26P1	0	genome.wustl.edu	37	16	46534659	46534659	+	RNA	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	46534659	46534659	T	A	SNP	ANKRD26P1	ENST00000566201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.970	-	-	-	no_errors	ANKRD26P1	HGNC	ENSG00000261239	tier1	-	-	76	0	0.00	28	7	20.00
ANKRD32	0	genome.wustl.edu	37	5	94022349	94022349	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	94022349	94022349	G	C	SNP	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	missense	c.2047	p.E683Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	tier1	-	-	39	0	0.00	28	4	12.50
ARAF	0	genome.wustl.edu	37	X	47424691	47424691	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	X	47424691	47424691	C	A	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	missense	c.499	p.Q167K	0.958	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061	tier1	-	-	48	0	0.00	24	5	17.24
ARL6IP4	0	genome.wustl.edu	37	12	123466182	123466184	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	123466182	123466184	CTC	-	DEL	ARL6IP4	ENST00000315580	human	ensembl	74_37	+1	known	in_frame_del	c.594_596	p.S202in_frame_del	0.985:0.990:1.000	pfam_Nucl_RNA-splicing_assoc_SR-25	pfam_Nucl_RNA-splicing_assoc_SR-25	-	no_errors	ARL6IP4	HGNC	ENSG00000182196	tier1			21	0	0.00	6	2	25.00
ARMC8	0	genome.wustl.edu	37	3	137991875	137991875	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	137991875	137991875	C	T	SNP	ARMC8	ENST00000469044	human	ensembl	74_37	+1	known	silent	c.1546	p.L516	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098	tier1	-	-	45	0	0.00	26	8	23.53
ASTE1	0	genome.wustl.edu	37	3	130732925	130732925	+	Silent	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	130732925	130732925	A	G	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	silent	c.2016	p.H672	0.000	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				17	0	0.00	11	5	31.25
ATP4A	0	genome.wustl.edu	37	19	36053377	36053377	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	36053377	36053377	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	missense	c.380	p.A127V	0.997	smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				62	0	0.00	72	4	5.26
BHMT	0	genome.wustl.edu	37	5	78426767	78426767	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	78426767	78426767	A	G	SNP	BHMT	ENST00000274353	human	ensembl	74_37	+1	known	missense	c.1049	p.E350G	1.000	superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT	HGNC	ENSG00000145692	tier1	-	-	42	0	0.00	30	4	11.76
BMP3	0	genome.wustl.edu	37	4	81967471	81967471	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	81967471	81967471	A	G	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.896	p.N299S	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				24	0	0.00	26	3	10.34
BMPR1B	0	genome.wustl.edu	37	4	96070005	96070005	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	96070005	96070005	T	G	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	missense	c.1273	p.Y425D	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696	tier1	-	-	99	0	0.00	65	9	12.16
C11orf24	0	genome.wustl.edu	37	11	68030003	68030003	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	11	68030003	68030003	T	C	SNP	C11orf24	ENST00000304271	human	ensembl	74_37	-1	known	missense	c.460	p.M154V	0.003	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067	tier1	-	-	146	0	0.00	72	23	24.21
C12orf50	0	genome.wustl.edu	37	12	88380170	88380170	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	88380170	88380170	T	G	SNP	C12orf50	ENST00000298699	human	ensembl	74_37	-1	known	missense	c.841	p.K281Q	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	tier1	-	-	74	0	0.00	47	4	7.84
C12orf55	0	genome.wustl.edu	37	12	97051988	97051988	+	Splice_Site	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	97051988	97051988	G	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	splice_site	c.5325-1	e38-1	1.000	-	-	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	32	0	0.00	23	11	32.35
C16orf71	0	genome.wustl.edu	37	16	4793092	4793093	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	4793092	4793093	-	A	INS	C16orf71	ENST00000299320	human	ensembl	74_37	+1	known	frame_shift_ins	c.832_833	p.E279fs	0.002:0.000	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246	tier1			30	0	0.00	29	11	27.50
C5orf24	0	genome.wustl.edu	37	5	134190864	134190864	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	134190864	134190864	C	T	SNP	C5orf24	ENST00000338051	human	ensembl	74_37	+1	known	missense	c.274	p.R92W	1.000	NULL	NULL	-	no_errors	C5orf24	HGNC	ENSG00000181904	tier1	-	-	35	0	0.00	16	4	20.00
C6orf106	0	genome.wustl.edu	37	6	34574629	34574629	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	34574629	34574629	C	T	SNP	C6orf106	ENST00000374023	human	ensembl	74_37	-1	known	silent	c.564	p.T188	0.999	NULL	superfamily_UBA-like	-	no_errors	C6orf106	HGNC	ENSG00000196821				79	0	0.00	45	3	6.25
CABIN1	0	genome.wustl.edu	37	22	24483514	24483514	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	22	24483514	24483514	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.3373	p.V1125I	0.996	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	tier1	rs148592192	-	51	0	0.00	15	5	25.00
CACNA1C	0	genome.wustl.edu	37	12	2676738	2676738	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	2676738	2676738	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.1673	p.T558M	0.990	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	tier1	-	-	22	0	0.00	10	6	37.50
CAPN3	0	genome.wustl.edu	37	15	42703106	42703106	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	15	42703106	42703106	A	G	SNP	CAPN3	ENST00000397163	human	ensembl	74_37	+1	known	missense	c.2288	p.Y763C	0.999	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN3	HGNC	ENSG00000092529	tier1	-	-	54	0	0.00	43	13	23.21
CBR3-AS1	0	genome.wustl.edu	37	21	37504209	37504210	+	RNA	INS	-	-	AAAT			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	21	37504209	37504210	0	AAAT	INS	CBR3-AS1	ENST00000413862	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997:0.993	-	-	-	no_errors	CBR3-AS1	HGNC	ENSG00000236830				8	0	0.00	5	2	28.57
CCDC47	0	genome.wustl.edu	37	17	61831840	61831840	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	61831840	61831840	T	C	SNP	CCDC47	ENST00000225726	human	ensembl	74_37	-1	known	silent	c.987	p.E329	1.000	pfam_DUF1682	pfam_DUF1682	-	no_errors	CCDC47	HGNC	ENSG00000108588				14	0	0.00	6	3	33.33
CCDC6	0	genome.wustl.edu	37	10	61552831	61552831	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	10	61552831	61552831	G	C	SNP	CCDC6	ENST00000263102	human	ensembl	74_37	-1	known	missense	c.1269	p.F423L	1.000	NULL	pfam_DUF2046	-	no_errors	CCDC6	HGNC	ENSG00000108091	tier1	-	-	106	0	0.00	102	7	6.42
CCDC80	0	genome.wustl.edu	37	3	112349104	112349104	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	112349104	112349104	G	T	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.1891	p.P631T	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				51	0	0.00	42	3	6.67
CDH11	0	genome.wustl.edu	37	16	64981513	64981513	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	64981513	64981513	T	C	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.2384	p.D795G	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	tier1	-	-	59	0	0.00	31	11	26.19
CEP128	0	genome.wustl.edu	37	14	81362115	81362115	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	81362115	81362115	T	C	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.592	p.R198G	1.000	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629	tier1	-	-	79	0	0.00	58	4	6.45
CEP192	0	genome.wustl.edu	37	18	13030462	13030462	+	Splice_Site	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	18	13030462	13030462	A	G	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	splice_site	c.1391-2	e10-2	1.000	-	-	-	no_errors	CEP192	HGNC	ENSG00000101639	tier1	-	-	42	0	0.00	33	6	15.38
CIB4	0	genome.wustl.edu	37	2	26846333	26846333	+	RNA	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	26846333	26846333	C	T	SNP	CIB4	ENST00000405346	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CIB4	HGNC	ENSG00000157884	tier1	-	-	35	0	0.00	23	4	14.81
CLCA3P	0	genome.wustl.edu	37	1	87101709	87101709	+	RNA	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	87101709	87101709	G	T	SNP	CLCA3P	ENST00000284054	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CLCA3P	HGNC	ENSG00000153923	tier1	-	-	62	0	0.00	17	3	15.00
CNTN2	0	genome.wustl.edu	37	1	205042860	205042860	+	Silent	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	205042860	205042860	G	T	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	silent	c.3090	p.A1030	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144	tier1	-	-	28	0	0.00	21	9	30.00
CNTNAP5	0	genome.wustl.edu	37	2	125192188	125192188	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	125192188	125192188	C	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.657	p.F219L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	tier1	-	-	39	0	0.00	25	6	19.35
CREBBP	0	genome.wustl.edu	37	16	3820633	3820633	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	3820633	3820633	C	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.2818	p.A940S	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				41	0	0.00	27	2	6.90
CROCCP2	0	genome.wustl.edu	37	1	16952971	16952971	+	RNA	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	16952971	16952971	G	A	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.805	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1	-	-	119	0	0.00	111	7	5.93
CTAGE5	0	genome.wustl.edu	37	14	39777653	39777653	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	39777653	39777653	A	T	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	missense	c.1070	p.E357V	0.589	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	tier1	-	-	60	0	0.00	23	13	36.11
CXXC4	0	genome.wustl.edu	37	4	105412091	105412091	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	105412091	105412091	G	C	SNP	CXXC4	ENST00000394767	human	ensembl	74_37	-1	known	missense	c.869	p.S290C	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772	tier1	-	-	67	0	0.00	50	4	7.41
DET1	0	genome.wustl.edu	37	15	89074239	89074239	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	15	89074239	89074239	G	A	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	missense	c.731	p.S244F	1.000	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	tier1	-	-	93	0	0.00	54	27	33.33
DLG2	0	genome.wustl.edu	37	11	83962299	83962299	+	Silent	SNP	A	A	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	11	83962299	83962299	A	T	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	silent	c.555	p.T185	0.999	pfam_MAGUK_PEST_N,superfamily_PDZ,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672	tier1	-	-	20	0	0.00	0	5	100.00
DPYD	0	genome.wustl.edu	37	1	97658623	97658623	+	Splice_Site	SNP	A	A	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	97658623	97658623	A	C	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	splice_site	c.2622+2	e20+2	1.000	-	-	-	no_errors	DPYD	HGNC	ENSG00000188641	tier1	-	-	66	0	0.00	71	9	11.25
E2F5	0	genome.wustl.edu	37	8	86126557	86126557	+	RNA	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	86126557	86126557	T	C	SNP	E2F5	ENST00000519128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	E2F5	HGNC	ENSG00000133740	tier1	-	-	46	0	0.00	26	17	39.53
EGFR	0	genome.wustl.edu	37	7	55273092	55273092	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	55273092	55273092	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.3415	p.L1139F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	tier1	-	-	25	0	0.00	22	7	24.14
ENSG00000267075	0	genome.wustl.edu	37	17	20451635	20451635	+	RNA	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	20451635	20451635	G	A	SNP	ENSG00000267075	ENST00000591705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene	ENSG00000267075	tier1	-	-	28	0	0.00	30	5	14.29
F5	0	genome.wustl.edu	37	1	169497273	169497273	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	169497273	169497273	T	C	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.5479	p.R1827G	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				40	0	0.00	34	3	8.11
FAM186A	0	genome.wustl.edu	37	12	50745671	50745671	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	50745671	50745671	T	C	SNP	FAM186A	ENST00000327337	human	ensembl	74_37	-1	known	silent	c.4944	p.G1648	0.000	NULL	NULL	-	no_errors	FAM186A	HGNC	ENSG00000185958				107	0	0.00	89	6	6.32
FAM208A	0	genome.wustl.edu	37	3	56703801	56703801	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	56703801	56703801	T	A	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	missense	c.662	p.Y221F	1.000	pfam_DUF3715	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946	tier1	-	-	54	0	0.00	23	15	39.47
FBXL4	0	genome.wustl.edu	37	6	99374651	99374651	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	99374651	99374651	A	G	SNP	FBXL4	ENST00000229971	human	ensembl	74_37	-1	known	missense	c.214	p.S72P	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL4	HGNC	ENSG00000112234	tier1	-	-	49	0	0.00	29	5	14.71
FLT1	0	genome.wustl.edu	37	13	28942717	28942719	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	13	28942717	28942719	ATG	-	DEL	FLT1	ENST00000541932	human	ensembl	74_37	-1	known	in_frame_del	c.2200_2198	p.S733in_frame_del	0.078:0.077:0.076	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755	tier1			33	0	0.00	13	3	18.75
FMN2	0	genome.wustl.edu	37	1	240255581	240255581	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	240255581	240255581	G	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.172	p.G58C	0.962	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	tier1	-	-	22	0	0.00	19	9	32.14
FNIP1	0	genome.wustl.edu	37	5	131008447	131008447	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	131008447	131008447	T	C	SNP	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	missense	c.1690	p.M564V	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	tier1	-	-	103	0	0.00	76	28	26.92
HDAC4	0	genome.wustl.edu	37	2	240036937	240036937	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	240036937	240036937	G	A	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.1588	p.R530C	0.966	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				39	0	0.00	27	4	12.90
HERC2P3	0	genome.wustl.edu	37	15	20644266	20644266	+	RNA	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	15	20644266	20644266	T	C	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229	tier1	-	-	220	0	0.00	170	16	8.56
HIST4H4	0	genome.wustl.edu	37	12	14923843	14923844	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	14923843	14923844	-	G	INS	HIST4H4	ENST00000358064	human	ensembl	74_37	-1	known	frame_shift_ins	c.176_175	p.L59fs	1.000:1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST4H4	HGNC	ENSG00000197837	tier1			63	0	0.00	45	5	10.00
HOXB7	0	genome.wustl.edu	37	17	46688090	46688090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	46688090	46688090	C	-	DEL	HOXB7	ENST00000239165	human	ensembl	74_37	-1	known	frame_shift_del	c.191	p.G64fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB7	HGNC	ENSG00000260027	tier1			26	0	0.00	11	3	21.43
HRNR	0	genome.wustl.edu	37	1	152187118	152187118	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	152187118	152187118	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.6987	p.G2329	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	-	-	50	0	0.00	62	13	17.33
ICAM5	0	genome.wustl.edu	37	19	10403909	10403909	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	10403909	10403909	G	A	SNP	ICAM5	ENST00000221980	human	ensembl	74_37	+1	known	silent	c.1452	p.T484	0.487	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376	tier1	-	-	45	0	0.00	31	5	13.89
IKBKAP	0	genome.wustl.edu	37	9	111659307	111659307	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	9	111659307	111659307	G	T	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.2513	p.S838Y	0.192	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				93	0	0.00	46	3	6.12
INF2	0	genome.wustl.edu	37	14	105173657	105173657	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	105173657	105173657	C	-	DEL	INF2	ENST00000392634	human	ensembl	74_37	+1	known	frame_shift_del	c.1053	p.L353fs	0.004	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	tier1			50	0	0.00	31	2	6.06
IPO11	0	genome.wustl.edu	37	5	61826585	61826585	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	61826585	61826585	A	G	SNP	IPO11	ENST00000409296	human	ensembl	74_37	+1	known	missense	c.2182	p.I728V	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200	tier1	-	-	80	0	0.00	30	16	34.78
IREB2	0	genome.wustl.edu	37	15	78730685	78730685	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	15	78730685	78730685	C	T	SNP	IREB2	ENST00000258886	human	ensembl	74_37	+1	known	silent	c.6	p.D2	1.000	NULL	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381				82	0	0.00	62	4	6.06
ITGB1BP1	0	genome.wustl.edu	37	2	9548313	9548313	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	9548313	9548313	C	A	SNP	ITGB1BP1	ENST00000355346	human	ensembl	74_37	-1	known	missense	c.310	p.V104F	1.000	pfam_Integrin-bd_ICAP-1,smart_PTB/PI_dom	pfam_Integrin-bd_ICAP-1,smart_PTB/PI_dom	-	no_errors	ITGB1BP1	HGNC	ENSG00000119185	tier1	-	-	50	0	0.00	40	4	9.09
ITGB6	0	genome.wustl.edu	37	2	161030646	161030646	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	161030646	161030646	T	C	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	tier1	-	-	27	0	0.00	31	9	22.50
IVNS1ABP	0	genome.wustl.edu	37	1	185267261	185267261	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	185267261	185267261	C	A	SNP	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	missense	c.1835	p.G612V	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				44	0	0.00	30	2	6.25
KCNB2	0	genome.wustl.edu	37	8	73849588	73849588	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	73849588	73849588	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	silent	c.1998	p.T666	0.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	tier1	-	-	24	0	0.00	7	4	36.36
KCNH1	0	genome.wustl.edu	37	1	211093142	211093142	+	Silent	SNP	C	C	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	211093142	211093142	C	G	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	silent	c.1302	p.G434	0.990	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	tier1	-	-	98	0	0.00	65	10	13.33
KCNS2	0	genome.wustl.edu	37	8	99441485	99441485	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	99441485	99441485	C	T	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	silent	c.1278	p.A426	0.993	NULL	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				12	0	0.00	7	3	30.00
KIAA0125	0	genome.wustl.edu	37	14	106391060	106391060	+	RNA	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	106391060	106391060	G	A	SNP	KIAA0125	ENST00000482999	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	KIAA0125	HGNC	ENSG00000226777	tier1	-	-	113	0	0.00	61	32	34.41
KIAA1210	0	genome.wustl.edu	37	X	118257580	118257580	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	X	118257580	118257580	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.446	p.S149F	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	tier1	-	-	22	0	0.00	17	5	22.73
KLC2	0	genome.wustl.edu	37	11	66033477	66033477	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	11	66033477	66033477	G	C	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.1596	p.W532C	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				30	0	0.00	20	2	9.09
KRT6A	0	genome.wustl.edu	37	12	52882150	52882150	+	Silent	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	52882150	52882150	G	T	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	silent	c.1386	p.I462	0.647	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420	tier1	-	-	84	0	0.00	73	13	15.12
LAMA3	0	genome.wustl.edu	37	18	21329508	21329508	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	18	21329508	21329508	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	nonsense	c.682	p.E228*	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	tier1	-	-	118	0	0.00	59	4	6.35
LCT	0	genome.wustl.edu	37	2	136566569	136566569	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	136566569	136566569	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.3348	p.Q1116	0.999	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	tier1	-	-	53	0	0.00	22	6	21.43
LGI2	0	genome.wustl.edu	37	4	25019636	25019636	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	25019636	25019636	G	T	SNP	LGI2	ENST00000382114	human	ensembl	74_37	-1	known	missense	c.630	p.S210R	1.000	smart_Cys-rich_flank_reg_C	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012	tier1	-	-	79	0	0.00	44	12	21.43
LMF2	0	genome.wustl.edu	37	22	50944766	50944766	+	Silent	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	22	50944766	50944766	G	T	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	silent	c.543	p.A181	1.000	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258	tier1	-	-	28	0	0.00	11	3	21.43
LOXHD1	0	genome.wustl.edu	37	18	44063558	44063558	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	18	44063558	44063558	G	A	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	silent	c.6147	p.Y2049	0.057	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	112	0	0.00	73	19	20.65
LRRC34	0	genome.wustl.edu	37	3	169514046	169514046	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	169514046	169514046	G	T	SNP	LRRC34	ENST00000446859	human	ensembl	74_37	-1	known	missense	c.1020	p.N340K	0.007	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757				52	0	0.00	38	2	5.00
LRRC6	0	genome.wustl.edu	37	8	133595957	133595957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	133595957	133595957	C	A	SNP	LRRC6	ENST00000250173	human	ensembl	74_37	-1	known	nonsense	c.1210	p.E404*	0.040	NULL	superfamily_HSP20-like_chaperone,smart_U2A'_phosphoprotein32A_C,pfscan_CS_dom	-	no_errors	LRRC6	HGNC	ENSG00000129295	tier1	-	-	55	0	0.00	61	9	12.86
LSM14A	0	genome.wustl.edu	37	19	34710734	34710735	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	34710734	34710735	-	T	INS	LSM14A	ENST00000433627	human	ensembl	74_37	+1	known	frame_shift_ins	c.1088_1089	p.D364fs	1.000:1.000	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14A	HGNC	ENSG00000257103	tier1			60	0	0.00	41	6	12.77
MACF1	0	genome.wustl.edu	37	1	39951742	39951743	+	RNA	INS	-	-	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	39951742	39951743	-	A	INS	MACF1	ENST00000496360	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986:0.084	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1			45	0	0.00	71	9	11.25
MDGA1	0	genome.wustl.edu	37	6	37614970	37614970	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	37614970	37614970	G	T	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.2034	p.N678K	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139	tier1	-	-	42	0	0.00	40	4	9.09
MDN1	0	genome.wustl.edu	37	6	90504332	90504333	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	90504332	90504333	AC	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.518_517	p.V173fs	0.998:1.000	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	tier1			31	0	0.00	24	2	7.69
METTL4	0	genome.wustl.edu	37	18	2554941	2554941	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	18	2554941	2554941	T	C	SNP	METTL4	ENST00000574538	human	ensembl	74_37	-1	known	missense	c.556	p.S186G	0.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL4	HGNC	ENSG00000101574	tier1	-	-	40	0	0.00	37	4	9.76
MPPE1	0	genome.wustl.edu	37	18	11888683	11888683	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	18	11888683	11888683	G	C	SNP	MPPE1	ENST00000588072	human	ensembl	74_37	-1	known	missense	c.554	p.S185C	1.000	NULL	pfam_PEstase_dom	-	no_errors	MPPE1	HGNC	ENSG00000154889	tier1	-	-	36	0	0.00	29	9	23.68
MTUS1	0	genome.wustl.edu	37	8	17532707	17532707	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	17532707	17532707	G	A	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.2893	p.R965W	1.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422	tier1	-	-	60	0	0.00	51	5	8.93
MYCN	0	genome.wustl.edu	37	2	16085729	16085729	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	16085729	16085729	G	A	SNP	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	missense	c.905	p.R302H	0.998	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323	tier1	rs140581169	-	59	0	0.00	24	8	25.00
MYO10	0	genome.wustl.edu	37	5	16670918	16670918	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	16670918	16670918	G	C	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	nonsense	c.5600	p.S1867*	0.999	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				59	0	0.00	33	3	8.33
NBPF6	0	genome.wustl.edu	37	1	108993239	108993239	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	108993239	108993239	G	A	SNP	NBPF6	ENST00000370040	human	ensembl	74_37	+1	known	missense	c.16	p.D6N	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF6	HGNC	ENSG00000186086	tier1	-	-	64	0	0.00	52	6	10.34
NCKAP5	0	genome.wustl.edu	37	2	133541313	133541313	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	133541313	133541313	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.3071	p.A1024V	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				33	0	0.00	37	3	7.50
NCKIPSD	0	genome.wustl.edu	37	3	48719087	48719087	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	48719087	48719087	G	T	SNP	NCKIPSD	ENST00000294129	human	ensembl	74_37	-1	known	missense	c.725	p.T242K	1.000	NULL	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672				44	0	0.00	38	4	9.52
NCOA6	0	genome.wustl.edu	37	20	33330205	33330205	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	20	33330205	33330205	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.3855	p.Q1285	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	tier1	-	-	87	0	0.00	45	7	13.46
NLGN1	0	genome.wustl.edu	37	3	173997346	173997346	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	173997346	173997346	G	A	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.1675	p.G559S	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	tier1	-	-	69	0	0.00	36	14	28.00
NOP58	0	genome.wustl.edu	37	2	203152394	203152394	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	203152394	203152394	A	G	SNP	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	missense	c.446	p.Y149C	1.000	NULL	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044	tier1	-	-	95	0	0.00	48	28	36.84
NOTCH2	0	genome.wustl.edu	37	1	120512369	120512369	+	Splice_Site	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	120512369	120512369	T	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	splice_site	c.875-2	e6-2	1.000	-	-	-	no_errors	NOTCH2	HGNC	ENSG00000134250	tier1	-	-	32	0	0.00	97	10	9.35
NOV	0	genome.wustl.edu	37	8	120430329	120430329	+	Silent	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	120430329	120430329	G	C	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	silent	c.342	p.G114	0.502	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999	tier1	-	-	153	0	0.00	96	8	7.69
NPAS2	0	genome.wustl.edu	37	2	101565927	101565927	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	101565927	101565927	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.778	p.R260C	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	tier1	-	-	32	0	0.00	21	4	16.00
NRXN2	0	genome.wustl.edu	37	11	64435121	64435121	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	11	64435121	64435121	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.1399	p.R467C	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1	rs142409712	-	50	0	0.00	38	8	17.39
NUP160	0	genome.wustl.edu	37	11	47809748	47809748	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	11	47809748	47809748	T	C	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	silent	c.3732	p.E1244	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				35	0	0.00	21	3	12.50
OR4K13	0	genome.wustl.edu	37	14	20502224	20502224	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	20502224	20502224	G	A	SNP	OR4K13	ENST00000315693	human	ensembl	74_37	-1	known	nonsense	c.694	p.R232*	0.047	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K13	HGNC	ENSG00000176253	tier1	-	-	21	0	0.00	18	10	35.71
OSBPL9	0	genome.wustl.edu	37	1	52253066	52253066	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	52253066	52253066	T	C	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	missense	c.2096	p.I699T	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859	tier1	-	-	31	0	0.00	14	8	36.36
PARP4	0	genome.wustl.edu	37	13	25021304	25021304	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	13	25021304	25021304	C	T	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	silent	c.3135	p.R1045	0.093	pfscan_VWF_A	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				50	0	0.00	30	3	9.09
PCDH10	0	genome.wustl.edu	37	4	134073819	134073819	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	134073819	134073819	C	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2524	p.P842T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	tier1	-	-	44	0	0.00	22	7	24.14
PCDH19	0	genome.wustl.edu	37	X	99662990	99662990	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	X	99662990	99662990	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.094	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	tier1	-	-	26	0	0.00	27	8	22.86
PCDHB11	0	genome.wustl.edu	37	5	140580848	140580848	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	140580848	140580848	G	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1501	p.A501S	0.782	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	tier1	-	-	151	0	0.00	113	40	25.97
PCIF1	0	genome.wustl.edu	37	20	44573647	44573647	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	20	44573647	44573647	C	T	SNP	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	silent	c.1146	p.I382	1.000	NULL	pfam_PCIF1_WW,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PCIF1	HGNC	ENSG00000100982	tier1	-	-	39	0	0.00	40	8	16.67
PCK2	0	genome.wustl.edu	37	14	24572370	24572370	+	Silent	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	24572370	24572370	G	T	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	silent	c.1374	p.G458	0.953	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889	tier1	-	-	87	0	0.00	97	9	8.49
PDE1B	0	genome.wustl.edu	37	12	54963024	54963024	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	54963024	54963024	C	T	SNP	PDE1B	ENST00000243052	human	ensembl	74_37	+1	known	missense	c.284	p.S95L	0.969	pfam_PDEase_N	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360	tier1	-	-	107	0	0.00	63	11	14.86
PHLDB2	0	genome.wustl.edu	37	3	111603832	111603832	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	111603832	111603832	A	G	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.908	p.N303S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	tier1	-	-	40	0	0.00	23	5	17.86
PITRM1	0	genome.wustl.edu	37	10	3185729	3185729	+	RNA	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	10	3185729	3185729	G	C	SNP	PITRM1	ENST00000464395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959	tier1	-	-	30	0	0.00	7	7	50.00
PITRM1	0	genome.wustl.edu	37	10	3185733	3185733	+	RNA	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	10	3185733	3185733	T	C	SNP	PITRM1	ENST00000464395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959	tier1	-	-	29	0	0.00	8	7	46.67
PITRM1	0	genome.wustl.edu	37	10	3185763	3185764	+	RNA	INS	-	-	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	10	3185763	3185764	-	T	INS	PITRM1	ENST00000464395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013:0.011	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959	tier1			26	0	0.00	10	3	23.08
PITRM1	0	genome.wustl.edu	37	10	3197875	3197875	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	10	3197875	3197875	T	C	SNP	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	missense	c.1529	p.Y510C	0.988	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_LuxS/M16	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	-	no_errors	PITRM1	HGNC	ENSG00000107959	tier1	-	-	44	0	0.00	17	6	26.09
PLAGL2	0	genome.wustl.edu	37	20	30784583	30784583	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	20	30784583	30784583	G	A	SNP	PLAGL2	ENST00000246229	human	ensembl	74_37	-1	known	missense	c.1163	p.A388V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003	tier1	-	-	52	0	0.00	28	6	17.65
PLEKHA8P1	0	genome.wustl.edu	37	12	45568029	45568029	+	RNA	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	45568029	45568029	T	C	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				81	0	0.00	51	5	8.93
POLR2C	0	genome.wustl.edu	37	16	57504037	57504038	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	57504037	57504038	-	A	INS	POLR2C	ENST00000219252	human	ensembl	74_37	+1	known	frame_shift_ins	c.604_605	p.W203fs	1.000:1.000	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978	tier1			92	0	0.00	70	24	25.53
PRAMEF10	0	genome.wustl.edu	37	1	12954510	12954510	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	12954510	12954510	T	A	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	missense	c.773	p.D258V	0.001	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545	tier1	-	-	123	0	0.00	152	20	11.63
PRELP	0	genome.wustl.edu	37	1	203453189	203453189	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	203453189	203453189	C	A	SNP	PRELP	ENST00000343110	human	ensembl	74_37	+1	known	missense	c.877	p.L293M	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	tier1	-	-	25	0	0.00	15	12	44.44
PRKD3	0	genome.wustl.edu	37	2	37516571	37516571	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	37516571	37516571	T	C	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	silent	c.645	p.V215	0.620	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825	tier1	-	-	70	0	0.00	41	8	16.33
PTPRF	0	genome.wustl.edu	37	1	44063676	44063676	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	44063676	44063676	G	C	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.2071	p.G691R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	tier1	-	-	50	0	0.00	40	25	38.46
RAD21-AS1	0	genome.wustl.edu	37	8	117887052	117887052	+	RNA	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	117887052	117887052	A	G	SNP	RAD21-AS1	ENST00000521487	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RAD21-AS1	HGNC	ENSG00000253327	tier1	-	-	56	0	0.00	20	17	45.95
RASGEF1C	0	genome.wustl.edu	37	5	179545653	179545653	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	179545653	179545653	C	T	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	missense	c.1039	p.G347R	0.999	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				66	0	0.00	52	5	8.77
RBBP4	0	genome.wustl.edu	37	1	33138069	33138069	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	33138069	33138069	A	T	SNP	RBBP4	ENST00000373493	human	ensembl	74_37	+1	known	missense	c.985	p.N329Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521	tier1	-	-	60	0	0.00	24	6	20.00
RDH13	0	genome.wustl.edu	37	19	55559827	55559827	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	55559827	55559827	G	A	SNP	RDH13	ENST00000415061	human	ensembl	74_37	-1	known	silent	c.528	p.A176	0.963	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439				44	0	0.00	31	2	6.06
RGL3	0	genome.wustl.edu	37	19	11527321	11527321	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	11527321	11527321	G	A	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.392	p.A131V	0.001	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	tier1	rs140982044	-	117	0	0.00	90	5	5.26
RGS12	0	genome.wustl.edu	37	4	3418649	3418649	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	3418649	3418649	C	A	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.2437	p.L813I	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788	tier1	-	-	38	0	0.00	28	5	15.15
RNF43	0	genome.wustl.edu	37	17	56434566	56434566	+	Silent	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	56434566	56434566	T	C	SNP	RNF43	ENST00000581868	human	ensembl	74_37	-1	putative	silent	c.2190	p.K730	0.002	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	tier1	-	-	30	0	0.00	14	6	30.00
RPH3A	0	genome.wustl.edu	37	12	113334573	113334573	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	113334573	113334573	G	A	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	silent	c.2073	p.V691	0.679	NULL	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169	tier1	-	-	31	0	0.00	11	6	35.29
SAFB	0	genome.wustl.edu	37	19	5661536	5661536	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	5661536	5661536	C	T	SNP	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	missense	c.1870	p.R624C	0.778	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633	tier1	-	-	35	0	0.00	26	5	16.13
SCAND3	0	genome.wustl.edu	37	6	28547054	28547054	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	28547054	28547054	T	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.563	p.D188V	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	81	0	0.00	37	19	33.93
SCRN3	0	genome.wustl.edu	37	2	175263171	175263171	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	175263171	175263171	G	T	SNP	SCRN3	ENST00000272732	human	ensembl	74_37	+1	known	splice_site	c.159+1	e1+1	1.000	-	-	-	no_errors	SCRN3	HGNC	ENSG00000144306	tier1	rs147792046	-	60	0	0.00	64	4	5.88
SETD2	0	genome.wustl.edu	37	3	47165570	47165570	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	3	47165570	47165570	G	T	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.556	p.P186T	0.962	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				78	0	0.00	55	4	6.78
SMC5	0	genome.wustl.edu	37	9	72962880	72962880	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	9	72962880	72962880	A	G	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.2815	p.I939V	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887	tier1	-	-	56	0	0.00	29	12	29.27
SMPDL3A	0	genome.wustl.edu	37	6	123116827	123116827	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	123116827	123116827	T	-	DEL	SMPDL3A	ENST00000368440	human	ensembl	74_37	+1	known	frame_shift_del	c.118	p.W41fs	1.000	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3A	HGNC	ENSG00000172594	tier1			66	0	0.00	32	2	5.88
SNX6	0	genome.wustl.edu	37	14	35073350	35073350	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	35073350	35073350	A	T	SNP	SNX6	ENST00000355110	human	ensembl	74_37	-1	known	missense	c.47	p.L16Q	1.000	NULL	pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515	tier1	-	-	27	0	0.00	15	6	28.57
SPPL2B	0	genome.wustl.edu	37	19	2334616	2334616	+	RNA	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	2334616	2334616	G	T	SNP	SPPL2B	ENST00000382189	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206	tier1	-	-	120	0	0.00	51	19	27.14
ST8SIA4	0	genome.wustl.edu	37	5	100222259	100222259	+	Silent	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	5	100222259	100222259	C	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	silent	c.291	p.V97	0.998	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	tier1	-	-	21	0	0.00	16	5	23.81
TADA1	0	genome.wustl.edu	37	1	166833122	166833123	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	1	166833122	166833123	GC	-	DEL	TADA1	ENST00000367874	human	ensembl	74_37	-1	known	frame_shift_del	c.269_268	p.A90fs	1.000:1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382	tier1			35	0	0.00	32	2	5.88
TAS2R64P	0	genome.wustl.edu	37	12	11230333	11230333	+	RNA	SNP	T	T	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	12	11230333	11230333	T	A	SNP	TAS2R64P	ENST00000534866	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAS2R64P	HGNC	ENSG00000256274	tier1	-	-	96	0	0.00	72	9	11.11
TECPR1	0	genome.wustl.edu	37	7	97847085	97847085	+	Silent	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	97847085	97847085	G	A	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	silent	c.3309	p.S1103	0.997	pfam_Beta-propeller_rpt_TECPR,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356	tier1	-	-	105	0	0.00	56	4	6.67
TECPR1	0	genome.wustl.edu	37	7	97870204	97870204	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	97870204	97870204	C	A	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	missense	c.892	p.V298L	0.994	smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				18	0	0.00	12	3	20.00
TG	0	genome.wustl.edu	37	8	133899059	133899059	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	133899059	133899059	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.1442	p.G481D	0.005	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832	tier1	-	-	53	0	0.00	47	4	7.84
THRA	0	genome.wustl.edu	37	17	38245543	38245543	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	38245543	38245543	G	A	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	missense	c.1067	p.R356H	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				33	0	0.00	34	3	8.11
TLL1	0	genome.wustl.edu	37	4	166924650	166924650	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	166924650	166924650	G	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.740	p.G247V	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	tier1	-	-	82	0	0.00	50	10	16.67
TLR2	0	genome.wustl.edu	37	4	154625228	154625228	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	4	154625228	154625228	A	G	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	missense	c.1169	p.Q390R	0.311	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462				41	0	0.00	16	2	11.11
TNKS	0	genome.wustl.edu	37	8	9592385	9592385	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	8	9592385	9592385	A	G	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.2324	p.D775G	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273	tier1	-	-	57	0	0.00	28	4	12.12
TOMM7	0	genome.wustl.edu	37	7	22857031	22857031	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	22857031	22857031	T	-	DEL	TOMM7	ENST00000372879	human	ensembl	74_37	-1	putative	frame_shift_del	c.289	p.T97fs	0.100	NULL	pfam_Tom7	-	no_errors	TOMM7	HGNC	ENSG00000196683	tier1			21	0	0.00	22	3	12.00
TP53	0	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs121913343	-	332	0	0.00	194	103	34.68
TRDN	0	genome.wustl.edu	37	6	123576225	123576225	+	Splice_Site	SNP	C	C	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	6	123576225	123576225	C	A	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	splice_site	c.1951+1	e37+1	1.000	-	-	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1	-	-	65	0	0.00	29	5	14.71
TTC8	0	genome.wustl.edu	37	14	89291075	89291075	+	Silent	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	14	89291075	89291075	G	T	SNP	TTC8	ENST00000338104	human	ensembl	74_37	+1	known	silent	c.24	p.L8	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC8	HGNC	ENSG00000165533	tier1	-	-	10	0	0.00	2	7	77.78
TTN	0	genome.wustl.edu	37	2	179554284	179554284	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	179554284	179554284	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28153	p.I9385V	0.902	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	35	0	0.00	24	5	17.24
VPS41	0	genome.wustl.edu	37	7	38766586	38766586	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	7	38766586	38766586	C	G	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.2407	p.A803P	1.000	pirsf_VPS41,pfscan_Znf_RING	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				23	0	0.00	26	7	21.21
XIRP2	0	genome.wustl.edu	37	2	168097247	168097247	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	2	168097247	168097247	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	splice_site	c.1042+1	e6+1	1.000	-	-	-	no_errors	XIRP2	HGNC	ENSG00000163092				87	0	0.00	50	3	5.66
ZNF174	0	genome.wustl.edu	37	16	3452110	3452111	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	3452110	3452111	-	A	INS	ZNF174	ENST00000268655	human	ensembl	74_37	+1	known	frame_shift_ins	c.106_107	p.N38fs	0.037:0.000	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	tier1			36	0	0.00	24	4	14.29
ZNF23	0	genome.wustl.edu	37	16	71483126	71483126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	71483126	71483126	T	-	DEL	ZNF23	ENST00000357254	human	ensembl	74_37	-1	known	frame_shift_del	c.802	p.S268fs	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377	tier1			76	0	0.00	19	2	9.52
ZNF570	0	genome.wustl.edu	37	19	37975902	37975902	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	19	37975902	37975902	C	T	SNP	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	missense	c.1378	p.H460Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827	tier1	-	-	44	0	0.00	38	6	13.64
ZNF646	0	genome.wustl.edu	37	16	31091561	31091561	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49W-01A-11D-A27G-09	TCGA-LN-A49W-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ade64252-be4f-49a4-bb7a-6becd25e9660	c222ce91-3136-4f1b-8947-b4a83e4df95e	16	31091561	31091561	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.3916	p.R1306W	0.846	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				16	0	0.00	11	2	15.38
