Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACADL	0	genome.wustl.edu	37	2	211053715	211053715	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	211053715	211053715	C	-	DEL	ACADL	ENST00000233710	human	ensembl	74_37	-1	known	frame_shift_del	c.1263	p.I422fs	1.000	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADL	HGNC	ENSG00000115361	tier1			48	0	0.00	15	2	11.76
ACKR2	0	genome.wustl.edu	37	3	42906441	42906441	+	Silent	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	42906441	42906441	T	C	SNP	ACKR2	ENST00000273145	human	ensembl	74_37	+1	known	silent	c.447	p.A149	0.800	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR2	HGNC	ENSG00000144648				41	0	0.00	13	2	13.33
ADAR	0	genome.wustl.edu	37	1	154574789	154574789	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	154574789	154574789	T	C	SNP	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	missense	c.458	p.H153R	0.000	NULL	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710	tier1	-	-	61	0	0.00	41	10	19.61
AGBL4	0	genome.wustl.edu	37	1	49511430	49511430	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	49511430	49511430	C	T	SNP	AGBL4	ENST00000371839	human	ensembl	74_37	-1	known	silent	c.420	p.P140	0.258	NULL	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094				43	0	0.00	47	3	6.00
ALPP	0	genome.wustl.edu	37	2	233245015	233245015	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	233245015	233245015	G	A	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	nonsense	c.777	p.W259*	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283	tier1	-	-	148	0	0.00	90	10	10.00
AMY1A	0	genome.wustl.edu	37	1	104203065	104203065	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	104203065	104203065	G	T	SNP	AMY1A	ENST00000370083	human	ensembl	74_37	+1	known	missense	c.962	p.G321V	0.971	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1A	HGNC	ENSG00000237763	tier1	-	-	215	0	0.00	178	23	11.44
AMY1A	0	genome.wustl.edu	37	1	104203066	104203066	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	104203066	104203066	C	T	SNP	AMY1A	ENST00000370083	human	ensembl	74_37	+1	known	silent	c.963	p.G321	0.311	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1A	HGNC	ENSG00000237763	tier1	rs138704923	-	213	0	0.00	179	23	11.39
ANKRD26	0	genome.wustl.edu	37	10	27317825	27317825	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	27317825	27317825	C	A	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.3976	p.D1326Y	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	tier1	-	-	29	0	0.00	23	4	14.81
ASAP2	0	genome.wustl.edu	37	2	9517087	9517087	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	9517087	9517087	C	T	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	silent	c.1797	p.T599	0.298	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	tier1	-	-	49	0	0.00	30	15	33.33
ASB2	0	genome.wustl.edu	37	14	94401050	94401050	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	94401050	94401050	C	T	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	silent	c.1716	p.P572	0.007	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				51	0	0.00	55	3	5.17
ATP13A3	0	genome.wustl.edu	37	3	194147972	194147972	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	194147972	194147972	T	C	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.2957	p.N986S	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657	tier1	-	-	43	0	0.00	29	5	14.71
B3GAT1	0	genome.wustl.edu	37	11	134253770	134253770	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	134253770	134253770	G	A	SNP	B3GAT1	ENST00000537389	human	ensembl	74_37	-1	known	missense	c.464	p.T155M	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT1	HGNC	ENSG00000109956	tier1	-	-	23	0	0.00	66	22	25.00
BCDIN3D	0	genome.wustl.edu	37	12	50232768	50232768	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	50232768	50232768	G	T	SNP	BCDIN3D	ENST00000333924	human	ensembl	74_37	-1	known	missense	c.265	p.L89I	0.995	NULL	pfam_Bin3	-	no_errors	BCDIN3D	HGNC	ENSG00000186666	tier1	-	-	31	0	0.00	16	5	23.81
BPTF	0	genome.wustl.edu	37	17	65850067	65850067	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	65850067	65850067	C	G	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.625	p.P209A	0.744	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				71	0	0.00	56	4	6.67
BRD9	0	genome.wustl.edu	37	5	884124	884124	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	884124	884124	C	T	SNP	BRD9	ENST00000467963	human	ensembl	74_37	-1	known	missense	c.895	p.V299M	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310	tier1	-	-	43	0	0.00	26	18	40.91
C4orf3	0	genome.wustl.edu	37	4	120225419	120225419	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	4	120225419	120225419	T	C	SNP	C4orf3	ENST00000399075	human	ensembl	74_37	-1	known	missense	c.182	p.N61S	0.025	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096	tier1	-	-	105	0	0.00	91	11	10.78
CABP4	0	genome.wustl.edu	37	11	67225884	67225884	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	67225884	67225884	C	T	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	missense	c.694	p.R232W	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544	tier1	-	-	31	0	0.00	25	9	26.47
CALD1	0	genome.wustl.edu	37	7	134625935	134625935	+	Silent	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	134625935	134625935	G	A	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	silent	c.792	p.S264	0.058	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				34	0	0.00	34	2	5.56
CCDC106	0	genome.wustl.edu	37	19	56160635	56160635	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	56160635	56160635	G	T	SNP	CCDC106	ENST00000308964	human	ensembl	74_37	+1	known	missense	c.96	p.Q32H	0.999	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581	tier1	-	-	80	0	0.00	45	4	8.16
CCDC124	0	genome.wustl.edu	37	19	18047332	18047332	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	18047332	18047332	G	T	SNP	CCDC124	ENST00000445755	human	ensembl	74_37	+1	known	nonsense	c.103	p.E35*	1.000	NULL	pfam_DUF1014,superfamily_HMG_box_dom	-	no_errors	CCDC124	HGNC	ENSG00000007080	tier1	-	-	27	0	0.00	25	4	13.79
CHD3	0	genome.wustl.edu	37	17	7809966	7809966	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	7809966	7809966	G	A	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.4454	p.R1485H	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	tier1	-	-	49	0	0.00	34	6	15.00
CHRNA4	0	genome.wustl.edu	37	20	61981585	61981585	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	20	61981585	61981585	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.1178	p.P393L	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				12	0	0.00	21	4	16.00
CLDN19	0	genome.wustl.edu	37	1	43204241	43204241	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	43204241	43204241	G	A	SNP	CLDN19	ENST00000296387	human	ensembl	74_37	-1	known	missense	c.239	p.A80V	0.087	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007				64	0	0.00	34	2	5.56
CLEC14A	0	genome.wustl.edu	37	14	38724771	38724771	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	38724771	38724771	C	A	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	nonsense	c.457	p.E153*	0.457	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435	tier1	-	-	68	0	0.00	48	6	11.11
CMKLR1	0	genome.wustl.edu	37	12	108686064	108686064	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	108686064	108686064	G	A	SNP	CMKLR1	ENST00000312143	human	ensembl	74_37	-1	known	missense	c.676	p.L226F	0.990	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_DEZorph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	tier1	-	-	52	0	0.00	30	4	11.76
COG2	0	genome.wustl.edu	37	1	230822767	230822767	+	Silent	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	230822767	230822767	A	G	SNP	COG2	ENST00000366669	human	ensembl	74_37	+1	known	silent	c.1467	p.Q489	0.190	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	tier1	-	-	38	0	0.00	34	5	12.82
CTDP1	0	genome.wustl.edu	37	18	77496418	77496418	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	18	77496418	77496418	C	T	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	nonsense	c.2644	p.Q882*	0.864	pfam_FCP1_C	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069	tier1	-	-	44	0	0.00	34	4	10.53
CTNNA1	0	genome.wustl.edu	37	5	138221923	138221923	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	138221923	138221923	A	T	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.1085	p.D362V	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	tier1	-	-	64	0	0.00	50	6	10.71
DPCD	0	genome.wustl.edu	37	10	103354421	103354421	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	103354421	103354421	G	C	SNP	DPCD	ENST00000370151	human	ensembl	74_37	+1	known	missense	c.71	p.R24T	1.000	NULL	NULL	-	no_errors	DPCD	HGNC	ENSG00000166171	tier1	-	-	110	0	0.00	63	13	17.11
DPEP2	0	genome.wustl.edu	37	16	68023258	68023258	+	Silent	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	68023258	68023258	G	A	SNP	DPEP2	ENST00000393847	human	ensembl	74_37	-1	known	silent	c.1038	p.I346	0.316	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP2	HGNC	ENSG00000167261	tier1	-	-	71	0	0.00	56	10	15.15
DTNA	0	genome.wustl.edu	37	18	32345961	32345961	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	18	32345961	32345961	A	G	SNP	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	missense	c.104	p.Y35C	1.000	pfam_EF-hand_dom_typ1,pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				33	0	0.00	36	3	7.69
EGR4	0	genome.wustl.edu	37	2	73519305	73519305	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	73519305	73519305	G	T	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.1050	p.S350R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				83	0	0.00	56	4	6.67
EIF4E2	0	genome.wustl.edu	37	2	233431951	233431951	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	233431951	233431951	C	T	SNP	EIF4E2	ENST00000409495	human	ensembl	74_37	+1	putative	missense	c.692	p.T231M	0.000	NULL	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E2	HGNC	ENSG00000135930				28	0	0.00	29	2	6.45
ENSG00000245261	0	genome.wustl.edu	37	6	43190859	43190859	+	RNA	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	43190859	43190859	C	A	SNP	ENSG00000245261	ENST00000500590	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-330M21.5	Clone_based_vega_gene	ENSG00000245261	tier1	-	-	27	0	0.00	19	6	24.00
ENSG00000249034	0	genome.wustl.edu	37	5	140242612	140242612	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	140242612	140242612	C	G	SNP	ENSG00000249034	ENST00000502505	human	ensembl	74_37	-1	known	missense	c.364	p.V122L	0.991	NULL	NULL	-	no_errors	AC005609.1	Clone_based_ensembl_gene	ENSG00000249034	tier1	-	-	83	0	0.00	64	6	8.57
EP400	0	genome.wustl.edu	37	12	132512560	132512560	+	Splice_Site	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	132512560	132512560	A	G	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	splice_site	c.5218-2	e27-2	0.963	-	-	-	no_errors	EP400	HGNC	ENSG00000183495				57	0	0.00	40	3	6.98
EPS15	0	genome.wustl.edu	37	1	51906102	51906102	+	Silent	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	51906102	51906102	G	A	SNP	EPS15	ENST00000371733	human	ensembl	74_37	-1	known	silent	c.957	p.N319	0.442	NULL	smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832				39	0	0.00	43	4	8.51
FAM105B	0	genome.wustl.edu	37	5	14693028	14693028	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	14693028	14693028	C	A	SNP	FAM105B	ENST00000284274	human	ensembl	74_37	+1	known	nonsense	c.930	p.Y310*	0.977	prints_FAM105	prints_FAM105,prints_FAM105B,prints_FAM105A	-	no_errors	FAM105B	HGNC	ENSG00000154124	tier1	-	-	68	0	0.00	70	33	32.04
FAM230B	0	genome.wustl.edu	37	22	21538079	21538079	+	RNA	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	22	21538079	21538079	A	G	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498				31	0	0.00	148	11	6.92
FAM45A	0	genome.wustl.edu	37	10	120897154	120897154	+	RNA	SNP	T	T	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	120897154	120897154	T	A	SNP	FAM45A	ENST00000489988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM45A	HGNC	ENSG00000119979	tier1	-	-	27	0	0.00	36	7	16.28
FAM84A	0	genome.wustl.edu	37	2	14775237	14775237	+	RNA	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	14775237	14775237	G	T	SNP	FAM84A	ENST00000497769	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM84A	HGNC	ENSG00000162981	tier1	-	-	43	0	0.00	38	4	9.52
FGF14	0	genome.wustl.edu	37	13	102568817	102568817	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	13	102568817	102568817	C	G	SNP	FGF14	ENST00000376143	human	ensembl	74_37	-1	known	missense	c.179	p.R60T	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF14	HGNC	ENSG00000102466	tier1	-	-	64	0	0.00	51	6	10.53
FGFR2	0	genome.wustl.edu	37	10	123243225	123243225	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	123243225	123243225	A	G	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.2291	p.L764P	1.000	pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468				60	0	0.00	45	3	6.25
FLG	0	genome.wustl.edu	37	1	152277667	152277667	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	152277667	152277667	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.9695	p.S3232F	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	135	0	0.00	110	18	14.06
GALNT16	0	genome.wustl.edu	37	14	69805402	69805402	+	Silent	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	69805402	69805402	T	C	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	silent	c.1002	p.S334	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626	tier1	-	-	111	0	0.00	84	12	12.50
GBP6	0	genome.wustl.edu	37	1	89843995	89843995	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	89843995	89843995	G	T	SNP	GBP6	ENST00000370456	human	ensembl	74_37	+1	known	nonsense	c.448	p.E150*	0.990	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP6	HGNC	ENSG00000183347				27	0	0.00	37	2	5.13
GDF11	0	genome.wustl.edu	37	12	56143474	56143474	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	56143474	56143474	G	C	SNP	GDF11	ENST00000257868	human	ensembl	74_37	+1	known	missense	c.1032	p.Q344H	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF11	HGNC	ENSG00000135414	tier1	-	-	49	0	0.00	36	6	14.29
GGNBP2	0	genome.wustl.edu	37	17	34923570	34923570	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	34923570	34923570	C	T	SNP	GGNBP2	ENST00000304718	human	ensembl	74_37	+1	known	missense	c.596	p.S199L	0.941	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	tier1	-	-	88	0	0.00	74	12	13.95
GID4	0	genome.wustl.edu	37	17	17957538	17957538	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	17957538	17957538	G	T	SNP	GID4	ENST00000268719	human	ensembl	74_37	+1	known	missense	c.596	p.R199L	1.000	pfam_Vacuolar_import/degrad_Vid24	pfam_Vacuolar_import/degrad_Vid24	-	no_errors	GID4	HGNC	ENSG00000141034				78	0	0.00	50	4	7.41
GMFG	0	genome.wustl.edu	37	19	39826162	39826162	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	39826162	39826162	G	T	SNP	GMFG	ENST00000597595	human	ensembl	74_37	-1	known	missense	c.13	p.L5M	0.997	pirsf_GMF-beta	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	-	no_errors	GMFG	HGNC	ENSG00000130755	tier1	-	-	71	0	0.00	49	4	7.55
GOSR2	0	genome.wustl.edu	37	17	45008544	45008544	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	45008544	45008544	G	T	SNP	GOSR2	ENST00000439730	human	ensembl	74_37	+1	known	missense	c.174	p.E58D	0.997	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	GOSR2	HGNC	ENSG00000108433				26	0	0.00	30	2	6.25
GPR141	0	genome.wustl.edu	37	7	37780568	37780568	+	Silent	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	37780568	37780568	C	A	SNP	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	silent	c.573	p.A191	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037	tier1	-	-	101	0	0.00	92	10	9.80
GRIA1	0	genome.wustl.edu	37	5	153085558	153085558	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	153085558	153085558	T	A	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.1784	p.F595Y	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				45	0	0.00	36	2	5.26
HIST1H2BH	0	genome.wustl.edu	37	6	26251922	26251922	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	26251922	26251922	C	G	SNP	HIST1H2BH	ENST00000356350	human	ensembl	74_37	+1	known	missense	c.44	p.S15C	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459	tier1	-	-	148	0	0.00	109	13	10.66
HIST1H3B	0	genome.wustl.edu	37	6	26032006	26032006	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	26032006	26032006	C	A	SNP	HIST1H3B	ENST00000244661	human	ensembl	74_37	-1	known	nonsense	c.283	p.E95*	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	tier1	-	-	95	0	0.00	89	14	13.59
HIST2H2BB	0	genome.wustl.edu	37	1	149398805	149398805	+	RNA	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	149398805	149398805	C	G	SNP	HIST2H2BB	ENST00000609585	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HIST2H2BB	HGNC	ENSG00000240929	tier1	-	-	60	0	0.00	64	10	13.51
HMMR	0	genome.wustl.edu	37	5	162917425	162917426	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	162917425	162917426	-	A	INS	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_ins	c.1992_1993	p.Q667fs	0.976:1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571	tier1			25	0	0.00	28	3	9.68
HNRNPL	0	genome.wustl.edu	37	19	39330959	39330959	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	39330959	39330959	G	-	DEL	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_del	c.1010	p.P337fs	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824	tier1			15	0	0.00	16	3	15.79
IL9R	0	genome.wustl.edu	37	X	155233447	155233447	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	X	155233447	155233447	C	T	SNP	IL9R	ENST00000369423	human	ensembl	74_37	+1	known	missense	c.494	p.S165L	0.819	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334	tier1	-	-	88	0	0.00	63	22	25.88
IRX4	0	genome.wustl.edu	37	5	1878497	1878499	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	1878497	1878499	GGC	-	DEL	IRX4	ENST00000231357	human	ensembl	74_37	-1	known	in_frame_del	c.1146_1144	p.A382in_frame_del	0.734:0.681:0.628	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX4	HGNC	ENSG00000113430	tier1			21	0	0.00	7	2	22.22
ITGAD	0	genome.wustl.edu	37	16	31414942	31414942	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	31414942	31414942	C	T	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	missense	c.680	p.T227M	0.672	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				41	0	0.00	34	3	8.11
KCNH6	0	genome.wustl.edu	37	17	61622991	61622991	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	61622991	61622991	G	T	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	missense	c.2713	p.D905Y	0.742	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	tier1	-	-	40	0	0.00	35	4	10.26
KDM3B	0	genome.wustl.edu	37	5	137753253	137753253	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	137753253	137753253	A	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.3389	p.Q1130L	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733	tier1	-	-	96	0	0.00	70	14	16.67
LYPLA1	0	genome.wustl.edu	37	8	54960502	54960502	+	RNA	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	54960502	54960502	C	T	SNP	LYPLA1	ENST00000519272	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	LYPLA1	HGNC	ENSG00000120992	tier1	-	-	51	0	0.00	51	5	8.93
MARCH7	0	genome.wustl.edu	37	2	160599647	160599647	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	160599647	160599647	C	T	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	missense	c.229	p.R77C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536				27	0	0.00	31	2	6.06
MIR548I1	0	genome.wustl.edu	37	3	125509324	125509324	+	RNA	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	125509324	125509324	A	G	SNP	MIR548I1	ENST00000408810	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	MIR548I1	HGNC	ENSG00000221737	tier1	-	-	214	0	0.00	184	14	7.07
MSH6	0	genome.wustl.edu	37	2	48030583	48030583	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	48030583	48030583	A	G	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.3197	p.Y1066C	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062	tier1	-	-	44	0	0.00	30	7	18.92
MYH1	0	genome.wustl.edu	37	17	10406064	10406066	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	10406064	10406066	TTG	0	DEL	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	in_frame_del	c.3102_3100	p.Q1034in_frame_del	1.000:1.000:1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				156	0	0.00	125	7	5.30
NAPRT1	0	genome.wustl.edu	37	8	144657109	144657109	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	144657109	144657109	G	T	SNP	NAPRT1	ENST00000276844	human	ensembl	74_37	-1	known	missense	c.1600	p.L534I	0.000	superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	NAPRT1	HGNC	ENSG00000147813	tier1	-	-	63	0	0.00	47	15	24.19
NAT10	0	genome.wustl.edu	37	11	34129782	34129782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	34129782	34129782	A	-	DEL	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.K5fs	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	tier1			58	0	0.00	41	3	6.82
NLRC3	0	genome.wustl.edu	37	16	3592200	3592201	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	3592200	3592201	-	GG	INS	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	frame_shift_ins	c.3236_3235	p.Q1079fs	0.997:1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	tier1			44	0	0.00	37	2	5.13
NOD2	0	genome.wustl.edu	37	16	50756597	50756597	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	50756597	50756597	C	A	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.2779	p.Q927K	0.855	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207	tier1	-	-	87	0	0.00	73	4	5.19
NOL10	0	genome.wustl.edu	37	2	10815986	10815986	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	10815986	10815986	G	T	SNP	NOL10	ENST00000381685	human	ensembl	74_37	-1	known	missense	c.223	p.P75T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	tier1	-	-	25	0	0.00	11	3	21.43
NOTCH2	0	genome.wustl.edu	37	1	120483302	120483302	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	120483302	120483302	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.3059	p.S1020F	0.004	pirsf_Notch,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	tier1	-	-	61	0	0.00	42	7	14.29
NOTCH3	0	genome.wustl.edu	37	19	15296491	15296491	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	15296491	15296491	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	splice_site	c.1952-1	e13-1	1.000	-	-	-	no_errors	NOTCH3	HGNC	ENSG00000074181	tier1	-	-	43	0	0.00	33	12	26.67
NPC1	0	genome.wustl.edu	37	18	21125043	21125043	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	18	21125043	21125043	C	T	SNP	NPC1	ENST00000269228	human	ensembl	74_37	-1	known	missense	c.1828	p.E610K	1.000	pfam_Patched,tigrfam_NP_C_type	pfam_Patched,pfam_MMPL_dom,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	tier1	-	-	51	0	0.00	57	4	6.56
NRG3	0	genome.wustl.edu	37	10	83637833	83637833	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	83637833	83637833	C	T	SNP	NRG3	ENST00000555784	human	ensembl	74_37	+1	known	silent	c.117	p.V39	1.000	NULL	NULL	-	no_errors	NRG3	HGNC	ENSG00000185737	tier1	-	-	50	0	0.00	46	7	13.21
NUP107	0	genome.wustl.edu	37	12	69114932	69114932	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	69114932	69114932	C	T	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.1286	p.A429V	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	tier1	-	-	26	0	0.00	13	3	18.75
NUP153	0	genome.wustl.edu	37	6	17661926	17661926	+	Silent	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	17661926	17661926	T	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	silent	c.1353	p.R451	1.000	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	tier1	-	-	48	0	0.00	23	6	20.69
NUP160	0	genome.wustl.edu	37	11	47814369	47814369	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	47814369	47814369	G	A	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	missense	c.3419	p.A1140V	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				20	0	0.00	19	3	13.64
OR2M2	0	genome.wustl.edu	37	1	248343797	248343797	+	Silent	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	248343797	248343797	G	T	SNP	OR2M2	ENST00000359682	human	ensembl	74_37	+1	known	silent	c.510	p.G170	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M2	HGNC	ENSG00000198601	tier1	-	-	145	0	0.00	119	9	7.03
OR2T34	0	genome.wustl.edu	37	1	248737167	248737167	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	248737167	248737167	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	74_37	-1	known	missense	c.892	p.R298C	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	tier1	rs148590921	-	15	0	0.00	12	4	25.00
OR2T6	0	genome.wustl.edu	37	1	248551359	248551359	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	248551359	248551359	C	T	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	silent	c.450	p.F150	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				53	0	0.00	31	2	6.06
OSBPL10	0	genome.wustl.edu	37	3	31774849	31774849	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	31774849	31774849	T	-	DEL	OSBPL10	ENST00000396556	human	ensembl	74_37	-1	known	frame_shift_del	c.995	p.N332fs	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	tier1			73	0	0.00	36	2	5.26
OTOGL	0	genome.wustl.edu	37	12	80647261	80647261	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	80647261	80647261	A	G	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.1274	p.N425S	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899	tier1	-	-	79	0	0.00	30	11	26.83
PARP2	0	genome.wustl.edu	37	14	20822982	20822982	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	20822982	20822982	G	A	SNP	PARP2	ENST00000250416	human	ensembl	74_37	+1	known	missense	c.817	p.A273T	1.000	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484				69	0	0.00	34	2	5.56
PCDHA3	0	genome.wustl.edu	37	5	140182336	140182336	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	140182336	140182336	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1554	p.Y518	0.732	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	tier1	-	-	213	0	0.00	190	11	5.47
PCDHGC5	0	genome.wustl.edu	37	5	140870083	140870083	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	5	140870083	140870083	G	A	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	missense	c.1276	p.A426T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	tier1	-	-	55	0	0.00	40	7	14.89
PENK	0	genome.wustl.edu	37	8	57358292	57358292	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	57358292	57358292	G	A	SNP	PENK	ENST00000518770	human	ensembl	74_37	-1	putative	missense	c.221	p.A74V	0.002	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A	-	no_errors	PENK	HGNC	ENSG00000181195	tier1	-	-	80	0	0.00	64	7	9.72
PHKG2	0	genome.wustl.edu	37	16	30764831	30764831	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	30764831	30764831	C	T	SNP	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	missense	c.509	p.S170L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873	tier1	-	-	39	0	0.00	34	6	15.00
PIK3R6	0	genome.wustl.edu	37	17	8733047	8733047	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	8733047	8733047	A	T	SNP	PIK3R6	ENST00000311434	human	ensembl	74_37	-1	known	missense	c.865	p.L289M	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R6	HGNC	ENSG00000174083	tier1	-	-	46	0	0.00	44	8	15.38
PITPNB	0	genome.wustl.edu	37	22	28292539	28292539	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	22	28292539	28292539	C	T	SNP	PITPNB	ENST00000455418	human	ensembl	74_37	-1	known	splice_site	c.378+1	e6+1	1.000	-	-	-	no_errors	PITPNB	HGNC	ENSG00000180957	tier1	-	-	20	0	0.00	17	6	26.09
PLAT	0	genome.wustl.edu	37	8	42037508	42037508	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	42037508	42037508	C	T	SNP	PLAT	ENST00000220809	human	ensembl	74_37	-1	known	silent	c.1299	p.P433	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368	tier1	-	-	32	0	0.00	42	5	10.64
PLEC	0	genome.wustl.edu	37	8	145012810	145012810	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	145012810	145012810	G	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.574	p.H192N	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				51	0	0.00	44	5	10.20
PLXNA4	0	genome.wustl.edu	37	7	131912288	131912288	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	131912288	131912288	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1804	p.D602N	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866	tier1	-	-	66	0	0.00	52	4	7.14
PLXND1	0	genome.wustl.edu	37	3	129286396	129286396	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	129286396	129286396	C	T	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.4025	p.R1342H	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399	tier1	-	-	77	0	0.00	38	4	9.52
PREP	0	genome.wustl.edu	37	6	105729749	105729749	+	Silent	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	105729749	105729749	G	T	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	silent	c.1710	p.L570	0.999	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				43	0	0.00	35	2	5.41
PRKCB	0	genome.wustl.edu	37	16	24183591	24183591	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	24183591	24183591	G	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.1240	p.D414Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	tier1	-	-	100	0	0.00	49	4	7.55
PYGL	0	genome.wustl.edu	37	14	51404467	51404467	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	51404467	51404467	T	C	SNP	PYGL	ENST00000216392	human	ensembl	74_37	-1	known	missense	c.332	p.E111G	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504				62	0	0.00	61	4	6.15
QSOX1	0	genome.wustl.edu	37	1	180166101	180166101	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	180166101	180166101	C	T	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	silent	c.2173	p.L725	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	tier1	-	-	115	0	0.00	58	14	19.44
RAB1A	0	genome.wustl.edu	37	2	65331879	65331879	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	65331879	65331879	G	T	SNP	RAB1A	ENST00000409784	human	ensembl	74_37	-1	known	missense	c.85	p.L29I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1A	HGNC	ENSG00000138069				41	0	0.00	37	4	9.76
RALGAPA1	0	genome.wustl.edu	37	14	36244250	36244250	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	36244250	36244250	G	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.229	p.Q77K	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	tier1	-	-	91	0	0.00	75	4	5.06
RALGAPB	0	genome.wustl.edu	37	20	37153456	37153456	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	20	37153456	37153456	A	G	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.1655	p.N552S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471	tier1	-	-	141	0	0.00	104	8	7.14
RCHY1	0	genome.wustl.edu	37	4	76439454	76439454	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	4	76439454	76439454	G	A	SNP	RCHY1	ENST00000324439	human	ensembl	74_37	-1	known	nonsense	c.43	p.R15*	0.006	NULL	pfam_Znf_CHY,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RCHY1	HGNC	ENSG00000163743				45	0	0.00	41	6	12.77
RECQL5	0	genome.wustl.edu	37	17	73662528	73662528	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	73662528	73662528	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	missense	c.110	p.A37V	0.990	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469	tier1	-	-	50	0	0.00	33	11	25.00
RNGTT	0	genome.wustl.edu	37	6	89600276	89600276	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	89600276	89600276	C	T	SNP	RNGTT	ENST00000369485	human	ensembl	74_37	-1	known	silent	c.834	p.K278	1.000	pfam_mRNA_cap_enzyme,pirsf_mRNA_cap_enz_bifunc	pfam_mRNA_cap_enzyme,pfam_mRNA_cap_enzyme_C,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_NA-bd_OB-fold,pirsf_mRNA_cap_enz_bifunc,pfscan_Tyr/Dual-sp_Pase	-	no_errors	RNGTT	HGNC	ENSG00000111880				49	0	0.00	38	2	5.00
RPA4	0	genome.wustl.edu	37	X	96140055	96140055	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	X	96140055	96140055	A	G	SNP	RPA4	ENST00000373040	human	ensembl	74_37	+1	known	missense	c.746	p.Y249C	0.007	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	tier1	-	-	23	0	0.00	3	8	72.73
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228	tier1			19	0	0.00	17	5	22.73
RPL6	0	genome.wustl.edu	37	12	112843140	112843140	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	112843140	112843140	G	T	SNP	RPL6	ENST00000202773	human	ensembl	74_37	-1	known	missense	c.755	p.A252D	1.000	pfam_60S_ribosomal_L6E	pfam_60S_ribosomal_L6E,pfam_Ribosomal_L6_N,superfamily_Translation_prot_SH3-like	-	no_errors	RPL6	HGNC	ENSG00000089009				34	0	0.00	24	3	11.11
RRNAD1	0	genome.wustl.edu	37	1	156703182	156703182	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	156703182	156703182	G	T	SNP	RRNAD1	ENST00000368216	human	ensembl	74_37	+1	known	missense	c.506	p.R169L	1.000	NULL	NULL	-	no_errors	RRNAD1	HGNC	ENSG00000143303				32	0	0.00	29	3	9.38
RXFP2	0	genome.wustl.edu	37	13	32365960	32365960	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	13	32365960	32365960	G	A	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.1163	p.R388Q	1.000	prints_Relaxin_rcpt	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105	tier1	-	-	79	0	0.00	61	11	15.28
SCIN	0	genome.wustl.edu	37	7	12680126	12680126	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	12680126	12680126	T	C	SNP	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	missense	c.1565	p.I522T	0.895	smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747	tier1	-	-	51	0	0.00	39	6	13.33
SCN9A	0	genome.wustl.edu	37	2	167056175	167056175	+	Silent	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	167056175	167056175	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	silent	c.4977	p.Y1659	0.961	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	tier1	-	-	147	0	0.00	111	13	10.48
SDCCAG8	0	genome.wustl.edu	37	1	243434327	243434327	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	243434327	243434327	G	T	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	nonsense	c.268	p.E90*	0.968	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282	tier1	-	-	31	0	0.00	29	4	12.12
SERPINB11	0	genome.wustl.edu	37	18	61390626	61390626	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	18	61390626	61390626	C	T	SNP	SERPINB11	ENST00000536691	human	ensembl	74_37	+1	known	missense	c.647	p.S216F	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB11	HGNC	ENSG00000206072	tier1	-	-	22	0	0.00	19	4	17.39
SERPING1	0	genome.wustl.edu	37	11	57367850	57367850	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	57367850	57367850	G	A	SNP	SERPING1	ENST00000278407	human	ensembl	74_37	+1	known	missense	c.550	p.G184R	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	tier1	-	-	73	0	0.00	55	5	8.33
SGCE	0	genome.wustl.edu	37	7	94218011	94218011	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	94218011	94218011	C	T	SNP	SGCE	ENST00000445866	human	ensembl	74_37	-1	known	silent	c.1362	p.Q454	1.000	NULL	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990				38	0	0.00	45	4	8.16
SH2D3C	0	genome.wustl.edu	37	9	130507210	130507210	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	9	130507210	130507210	G	A	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	missense	c.1433	p.A478V	0.789	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				74	0	0.00	50	4	7.41
SLC25A25	0	genome.wustl.edu	37	9	130868491	130868491	+	Silent	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	9	130868491	130868491	G	T	SNP	SLC25A25	ENST00000373069	human	ensembl	74_37	+1	known	silent	c.999	p.G333	0.996	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Graves_DC	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A25	HGNC	ENSG00000148339	tier1	-	-	78	0	0.00	46	23	33.33
SLC26A9	0	genome.wustl.edu	37	1	205899089	205899089	+	Silent	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	205899089	205899089	C	G	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	silent	c.648	p.L216	0.998	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				56	0	0.00	36	4	10.00
SNED1	0	genome.wustl.edu	37	2	241969711	241969711	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	241969711	241969711	A	T	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.224	p.N75I	1.000	NULL	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	tier1	-	-	98	0	0.00	75	11	12.79
SORT1	0	genome.wustl.edu	37	1	109867695	109867695	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	109867695	109867695	C	T	SNP	SORT1	ENST00000256637	human	ensembl	74_37	-1	known	missense	c.1660	p.G554S	1.000	pfam_BNR_rpt,smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243				39	0	0.00	30	3	9.09
SPNS1	0	genome.wustl.edu	37	16	28993282	28993282	+	Silent	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	16	28993282	28993282	G	T	SNP	SPNS1	ENST00000311008	human	ensembl	74_37	+1	known	silent	c.870	p.L290	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682				117	0	0.00	90	5	5.26
ST18	0	genome.wustl.edu	37	8	53050009	53050009	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	8	53050009	53050009	C	T	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.2203	p.V735M	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	tier1	-	-	72	0	0.00	68	18	20.93
STAG1	0	genome.wustl.edu	37	3	136141859	136141859	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	136141859	136141859	G	C	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.1678	p.Q560E	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				76	0	0.00	70	4	5.41
SUPT16H	0	genome.wustl.edu	37	14	21834640	21834640	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	21834640	21834640	T	-	DEL	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	frame_shift_del	c.1004	p.K335fs	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	tier1			25	0	0.00	28	2	6.67
TBC1D32	0	genome.wustl.edu	37	6	121638672	121638672	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	6	121638672	121638672	T	C	SNP	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	missense	c.464	p.N155S	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350	tier1	-	-	134	0	0.00	95	5	5.00
THAP4	0	genome.wustl.edu	37	2	242573291	242573292	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	242573291	242573292	-	C	INS	THAP4	ENST00000407315	human	ensembl	74_37	-1	known	frame_shift_ins	c.281_280	p.A94fs	0.000:0.000	NULL	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946	tier1			65	0	0.00	48	13	21.31
TLL2	0	genome.wustl.edu	37	10	98144480	98144480	+	Silent	SNP	G	G	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	98144480	98144480	G	A	SNP	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	silent	c.2058	p.P686	0.508	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587	tier1	-	-	47	0	0.00	28	5	15.15
TMEM131	0	genome.wustl.edu	37	2	98409874	98409874	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	98409874	98409874	T	C	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.3529	p.I1177V	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	tier1	-	-	89	0	0.00	101	10	9.01
TMEM184A	0	genome.wustl.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	1586653	1586654	-	GCC	INS	TMEM184A	ENST00000297477	human	ensembl	74_37	-1	known	in_frame_ins	c.1177_1176	p.392in_frame_insG	0.000:0.000	NULL	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855	tier1			10	0	0.00	8	5	38.46
TNK2	0	genome.wustl.edu	37	3	195615459	195615459	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	195615459	195615459	T	C	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.190	p.M64V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938	tier1	-	-	51	0	0.00	39	5	11.36
TP53	0	genome.wustl.edu	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	17	7578461	7578461	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.469	p.V157F	0.032	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs121912654	-	446	0	0.00	299	128	29.91
TRIM68	0	genome.wustl.edu	37	11	4622317	4622317	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	11	4622317	4622317	G	C	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.847	p.L283V	0.950	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				53	0	0.00	18	2	10.00
TRIM8	0	genome.wustl.edu	37	10	104404515	104404515	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	104404515	104404515	C	T	SNP	TRIM8	ENST00000302424	human	ensembl	74_37	+1	known	silent	c.141	p.S47	0.994	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRIM8	HGNC	ENSG00000171206	tier1	-	-	46	0	0.00	49	4	7.55
TRMT13	0	genome.wustl.edu	37	1	100613525	100613525	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	100613525	100613525	G	T	SNP	TRMT13	ENST00000370141	human	ensembl	74_37	+1	known	missense	c.893	p.R298L	0.996	pfam_Methyltransferase_TRM13	pfam_Methyltransferase_TRM13,pfam_Znf_CCCH-type_TRM13,pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	TRMT13	HGNC	ENSG00000122435				34	0	0.00	26	4	13.33
TRMT61A	0	genome.wustl.edu	37	14	103996454	103996454	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	14	103996454	103996454	G	T	SNP	TRMT61A	ENST00000389749	human	ensembl	74_37	+1	known	missense	c.139	p.V47F	0.022	pfam_tRNA_MeTrfase_GCD14,pirsf_tRNA_MeTrfase_GCD14	pfam_tRNA_MeTrfase_GCD14,pirsf_tRNA_MeTrfase_GCD14	-	no_errors	TRMT61A	HGNC	ENSG00000166166	tier1	-	-	60	0	0.00	38	4	9.52
TROVE2	0	genome.wustl.edu	37	1	193053996	193053997	+	RNA	INS	-	-	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	1	193053996	193053997	-	A	INS	TROVE2	ENST00000460715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747	tier1			26	0	0.00	25	5	16.67
TTN	0	genome.wustl.edu	37	2	179611634	179611634	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	179611634	179611634	C	T	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.15493	p.D5165N	0.959	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	85	0	0.00	63	13	17.11
TTN	0	genome.wustl.edu	37	2	179441478	179441478	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	2	179441478	179441478	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.61789	p.D20597H	0.975	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0.00	37	3	7.50
TTPAL	0	genome.wustl.edu	37	20	43115335	43115335	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	20	43115335	43115335	A	G	SNP	TTPAL	ENST00000262605	human	ensembl	74_37	+1	known	missense	c.739	p.I247V	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	tier1	-	-	27	0	0.00	42	4	8.70
USP19	0	genome.wustl.edu	37	3	49148789	49148789	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	3	49148789	49148789	G	C	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2918	p.P973R	0.998	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046	tier1	-	-	30	0	0.00	24	5	17.24
USP8	0	genome.wustl.edu	37	15	50784950	50784950	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	15	50784950	50784950	C	T	SNP	USP8	ENST00000307179	human	ensembl	74_37	+1	known	missense	c.2287	p.R763W	1.000	NULL	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592	tier1	rs78143971	-	28	0	0.00	39	6	13.33
VPS13C	0	genome.wustl.edu	37	15	62232916	62232916	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	15	62232916	62232916	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.5531	p.R1844L	0.994	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				31	0	0.00	37	2	5.13
VPS29	0	genome.wustl.edu	37	12	110930988	110930988	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	12	110930988	110930988	T	C	SNP	VPS29	ENST00000549578	human	ensembl	74_37	-1	known	missense	c.244	p.I82V	1.000	tigrfam_Phosphodiesterase_MJ0936	tigrfam_Phosphodiesterase_MJ0936	-	no_errors	VPS29	HGNC	ENSG00000111237	tier1	-	-	20	0	0.00	12	6	33.33
VWDE	0	genome.wustl.edu	37	7	12414695	12414695	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	7	12414695	12414695	C	T	SNP	VWDE	ENST00000452576	human	ensembl	74_37	-1	known	missense	c.1183	p.V395M	0.865	NULL	pfam_VWF_type-D,superfamily_Cadherin-like,smart_VWF_type-D,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	VWDE	HGNC	ENSG00000146530	tier1	-	-	70	0	0.00	66	11	14.29
ZBED4	0	genome.wustl.edu	37	22	50280738	50280739	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	22	50280738	50280739	-	C	INS	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	frame_shift_ins	c.3428_3429	p.L1144fs	0.982:0.998	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	tier1			57	0	0.00	44	11	20.00
ZFP64	0	genome.wustl.edu	37	20	50769335	50769335	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	20	50769335	50769335	C	T	SNP	ZFP64	ENST00000216923	human	ensembl	74_37	-1	known	missense	c.1396	p.D466N	0.006	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256	tier1	-	-	21	0	0.00	19	9	32.14
ZFYVE27	0	genome.wustl.edu	37	10	99509265	99509265	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	10	99509265	99509265	C	T	SNP	ZFYVE27	ENST00000356257	human	ensembl	74_37	+1	known	silent	c.586	p.L196	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE27	HGNC	ENSG00000155256	tier1	-	-	72	0	0.00	45	8	15.09
ZNF582	0	genome.wustl.edu	37	19	56895796	56895796	+	Silent	SNP	C	C	T			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	56895796	56895796	C	T	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	silent	c.990	p.Q330	0.930	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869				41	0	0.00	26	2	7.14
ZNF780A	0	genome.wustl.edu	37	19	40580618	40580618	+	Silent	SNP	T	T	C			TCGA-LN-A49X-01A-31D-A27G-09	TCGA-LN-A49X-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07f227f2-7f51-461a-9196-6dd37dceb2c8	06532cf4-0464-427c-b802-8e7b7a5bd0b1	19	40580618	40580618	T	C	SNP	ZNF780A	ENST00000455521	human	ensembl	74_37	-1	known	silent	c.1734	p.K578	0.991	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782	tier1	-	-	89	0	0.00	78	6	7.14
