Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACTBL2	0	genome.wustl.edu	37	5	56777529	56777529	+	Silent	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	56777529	56777529	G	T	SNP	ACTBL2	ENST00000423391	human	ensembl	74_37	-1	known	silent	c.1006	p.R336	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTBL2	HGNC	ENSG00000169067				79	0	0.00	55	3	5.17
ADIPOR1	0	genome.wustl.edu	37	1	202913041	202913041	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	202913041	202913041	A	G	SNP	ADIPOR1	ENST00000340990	human	ensembl	74_37	-1	known	missense	c.650	p.M217T	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	ADIPOR1	HGNC	ENSG00000159346	tier1	-	-	31	0	0.00	28	4	12.50
ADIPOR1	0	genome.wustl.edu	37	1	202915710	202915710	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	202915710	202915710	G	T	SNP	ADIPOR1	ENST00000340990	human	ensembl	74_37	-1	known	missense	c.287	p.P96Q	1.000	NULL	pfam_HlyIII-related	-	no_errors	ADIPOR1	HGNC	ENSG00000159346				56	0	0.00	53	3	5.36
AHCTF1	0	genome.wustl.edu	37	1	247030980	247030980	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	247030980	247030980	G	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.3249	p.S1083R	0.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207	tier1	-	-	66	0	0.00	72	4	5.26
AHNAK2	0	genome.wustl.edu	37	14	105404775	105404775	+	Silent	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	105404775	105404775	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.17013	p.R5671	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	tier1	-	-	93	0	0.00	72	19	20.88
AKR1A1	0	genome.wustl.edu	37	1	46035590	46035590	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	46035590	46035590	G	T	SNP	AKR1A1	ENST00000351829	human	ensembl	74_37	+1	known	missense	c.940	p.A314S	1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1A1	HGNC	ENSG00000117448	tier1	-	-	43	0	0.00	27	6	18.18
ANK3	0	genome.wustl.edu	37	10	61932103	61932103	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	10	61932103	61932103	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.2441	p.T814I	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				39	0	0.00	36	3	7.69
ANKRD20A4	0	genome.wustl.edu	37	9	69420323	69420323	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	69420323	69420323	G	T	SNP	ANKRD20A4	ENST00000357336	human	ensembl	74_37	+1	known	missense	c.1213	p.D405Y	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	tier1	-	-	87	0	0.00	133	19	12.50
ANKRD30B	0	genome.wustl.edu	37	18	14784464	14784464	+	Silent	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	18	14784464	14784464	T	A	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	silent	c.1602	p.P534	0.030	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777	tier1	-	-	139	0	0.00	117	23	16.43
ANKRD44	0	genome.wustl.edu	37	2	197870538	197870538	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	197870538	197870538	C	G	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	missense	c.2152	p.A718P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				23	0	0.00	35	6	14.63
ANKRD50	0	genome.wustl.edu	37	4	125631531	125631531	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	125631531	125631531	T	C	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.136	p.S46G	0.327	superfamily_P-loop_NTPase	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458	tier1	-	-	73	0	0.00	38	10	20.83
ARFGEF2	0	genome.wustl.edu	37	20	47538534	47538534	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	47538534	47538534	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	silent	c.108	p.C36	1.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	tier1	-	-	58	0	0.00	61	15	19.74
ASXL3	0	genome.wustl.edu	37	18	31319646	31319646	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	18	31319646	31319646	A	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.2278	p.I760L	0.895	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				18	0	0.00	16	3	15.79
ATG3	0	genome.wustl.edu	37	3	112253120	112253120	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	112253120	112253120	G	A	SNP	ATG3	ENST00000283290	human	ensembl	74_37	-1	known	missense	c.859	p.H287Y	1.000	pfam_Autophagy-rel_prot_3_C	pfam_Autophagy-rel_prot_3_N,pfam_Autophagy-rel_prot_3,pfam_Autophagy-rel_prot_3_C	-	no_errors	ATG3	HGNC	ENSG00000144848	tier1	-	-	64	0	0.00	80	27	25.23
ATP8B3	0	genome.wustl.edu	37	19	1809675	1809675	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	1809675	1809675	C	T	SNP	ATP8B3	ENST00000531925	human	ensembl	74_37	-1	known	missense	c.257	p.R86K	0.986	NULL	NULL	-	no_errors	ATP8B3	HGNC	ENSG00000130270	tier1	-	-	46	0	0.00	38	12	24.00
ATXN8OS	0	genome.wustl.edu	37	13	70713518	70713518	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	13	70713518	70713518	G	A	SNP	ATXN8OS	ENST00000414504	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATXN8OS	HGNC	ENSG00000230223				50	0	0.00	27	3	10.00
BPTF	0	genome.wustl.edu	37	17	65905779	65905779	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	65905779	65905779	C	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.3272	p.P1091L	0.981	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	tier1	-	-	46	0	0.00	30	5	14.29
BRCA2	0	genome.wustl.edu	37	13	32954213	32954213	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	13	32954213	32954213	C	T	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.9187	p.P3063S	0.998	pfam_BRCA2_OB_3,superfamily_NA-bd_OB-fold,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	tier1	rs80359176	-	93	0	0.00	47	13	21.67
C16orf82	0	genome.wustl.edu	37	16	27079902	27079902	+	RNA	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	27079902	27079902	C	A	SNP	C16orf82	ENST00000418886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C16orf82	HGNC	ENSG00000234186				13	0	0.00	10	3	23.08
C1orf173	0	genome.wustl.edu	37	1	75038188	75038188	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	75038188	75038188	G	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.3206	p.S1069C	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	107	0	0.00	75	20	21.05
C2orf68	0	genome.wustl.edu	37	2	85838668	85838668	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	85838668	85838668	G	T	SNP	C2orf68	ENST00000409734	human	ensembl	74_37	-1	known	missense	c.349	p.P117T	0.002	NULL	pfam_UPF0561	-	no_errors	C2orf68	HGNC	ENSG00000168887	tier1	-	-	59	0	0.00	67	4	5.63
C7	0	genome.wustl.edu	37	5	40937498	40937498	+	RNA	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	40937498	40937498	T	A	SNP	C7	ENST00000489457	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	C7	HGNC	ENSG00000112936	tier1	-	-	21	0	0.00	10	6	37.50
C9orf78	0	genome.wustl.edu	37	9	132596001	132596001	+	RNA	DEL	A	A	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	132596001	132596001	A	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	tier1			25	0	0.00	18	2	10.00
CAPN13	0	genome.wustl.edu	37	2	31010157	31010157	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	31010157	31010157	G	T	SNP	CAPN13	ENST00000295055	human	ensembl	74_37	-1	known	missense	c.35	p.S12Y	0.003	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	tier1	-	-	51	0	0.00	65	4	5.80
CAPNS1	0	genome.wustl.edu	37	19	36632053	36632053	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	36632053	36632053	G	A	SNP	CAPNS1	ENST00000588780	human	ensembl	74_37	+1	known	missense	c.140	p.G47D	0.363	NULL	pfscan_EF_hand_dom	-	no_errors	CAPNS1	HGNC	ENSG00000126247				18	0	0.00	13	7	35.00
CAPZA1	0	genome.wustl.edu	37	1	113212985	113212985	+	RNA	DEL	T	T	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	113212985	113212985	T	-	DEL	CAPZA1	ENST00000476936	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			34	0	0.00	33	3	8.33
CCDC142	0	genome.wustl.edu	37	2	74701784	74701784	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	74701784	74701784	C	T	SNP	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	silent	c.2142	p.P714	0.011	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637	tier1	-	-	57	0	0.00	60	14	18.92
CCDC151	0	genome.wustl.edu	37	19	11537524	11537524	+	Silent	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	11537524	11537524	C	A	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	silent	c.693	p.L231	1.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003	tier1	-	-	52	0	0.00	17	13	43.33
CCDC37	0	genome.wustl.edu	37	3	126155263	126155263	+	RNA	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	126155263	126155263	G	T	SNP	CCDC37	ENST00000506204	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC37	HGNC	ENSG00000163885	tier1	-	-	59	0	0.00	47	4	7.84
CD300LG	0	genome.wustl.edu	37	17	41926113	41926113	+	Silent	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	41926113	41926113	C	A	SNP	CD300LG	ENST00000317310	human	ensembl	74_37	+1	known	silent	c.231	p.G77	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LG	HGNC	ENSG00000161649	tier1	-	-	15	0	0.00	24	5	17.24
CD93	0	genome.wustl.edu	37	20	23066789	23066791	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	23066789	23066791	AGC	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	in_frame_del	c.41_39	p.L15in_frame_del	0.176:0.289:0.517	pirsf_CD93/CD141	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	tier1			24	0	0.00	14	3	17.65
CDH10	0	genome.wustl.edu	37	5	24535839	24535839	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	24535839	24535839	G	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.619	p.P207T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	tier1	-	-	41	0	0.00	31	5	13.89
CDHR5	0	genome.wustl.edu	37	11	617432	617432	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	617432	617432	G	A	SNP	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	silent	c.2457	p.S819	0.000	NULL	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834	tier1	-	-	43	0	0.00	21	6	22.22
CEACAM19	0	genome.wustl.edu	37	19	45182195	45182195	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	45182195	45182195	A	G	SNP	CEACAM19	ENST00000403660	human	ensembl	74_37	+1	known	missense	c.646	p.T216A	0.544	NULL	pfam_Ig_V-set	-	no_errors	CEACAM19	HGNC	ENSG00000186567	tier1	-	-	80	0	0.00	71	4	5.33
CIAO1	0	genome.wustl.edu	37	2	96934312	96934312	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	96934312	96934312	G	C	SNP	CIAO1	ENST00000488633	human	ensembl	74_37	+1	known	missense	c.607	p.D203H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIAO1	HGNC	ENSG00000144021	tier1	-	-	49	0	0.00	60	11	15.49
CLLU1	0	genome.wustl.edu	37	12	92818799	92818799	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	92818799	92818799	C	A	SNP	CLLU1	ENST00000378485	human	ensembl	74_37	+1	known	missense	c.343	p.Q115K	0.014	NULL	NULL	-	no_errors	CLLU1	HGNC	ENSG00000257127	tier1	-	-	42	0	0.00	42	7	14.29
CLSPN	0	genome.wustl.edu	37	1	36203660	36203662	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	36203660	36203662	TTC	-	DEL	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	in_frame_del	c.3597_3595	p.E1199in_frame_del	0.998:1.000:0.950	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	tier1			28	0	0.00	17	3	15.00
CLTC	0	genome.wustl.edu	37	17	57742246	57742246	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	57742246	57742246	A	T	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	missense	c.1620	p.E540D	1.000	superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	tier1	-	-	55	0	0.00	57	12	17.39
COG5	0	genome.wustl.edu	37	7	106897227	106897227	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	106897227	106897227	G	A	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	nonsense	c.1792	p.Q598*	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597	tier1	-	-	53	0	0.00	38	7	15.56
COL11A1	0	genome.wustl.edu	37	1	103354301	103354301	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	103354301	103354301	G	-	DEL	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_del	c.4568	p.P1523fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	tier1			47	0	0.00	52	6	10.34
COPS5	0	genome.wustl.edu	37	8	67971544	67971544	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	67971544	67971544	C	T	SNP	COPS5	ENST00000357849	human	ensembl	74_37	-1	known	missense	c.280	p.D94N	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS5	HGNC	ENSG00000121022	tier1	-	-	44	0	0.00	40	10	20.00
CPAMD8	0	genome.wustl.edu	37	19	17119359	17119359	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	17119359	17119359	C	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.656	p.G219V	1.000	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111	tier1	-	-	43	0	0.00	31	7	18.42
CPNE8	0	genome.wustl.edu	37	12	39047698	39047698	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	39047698	39047698	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	missense	c.1681	p.Q561K	1.000	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	tier1	-	-	69	0	0.00	69	4	5.48
CPS1	0	genome.wustl.edu	37	2	211541847	211541847	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	211541847	211541847	T	C	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.4409	p.L1470P	1.000	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826	tier1	-	-	67	0	0.00	72	12	14.29
CREB3L4	0	genome.wustl.edu	37	1	153945466	153945468	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	153945466	153945468	AAG	-	DEL	CREB3L4	ENST00000271889	human	ensembl	74_37	+1	known	in_frame_del	c.655_657	p.K220in_frame_del	1.000:1.000:1.000	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L4	HGNC	ENSG00000143578	tier1			60	0	0.00	42	5	10.64
CYB5RL	0	genome.wustl.edu	37	1	54640384	54640384	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	54640384	54640384	C	T	SNP	CYB5RL	ENST00000419823	human	ensembl	74_37	-1	known	missense	c.856	p.A286T	0.975	pfam_OxRdtase_FAD/NAD-bd,prints_NADH-Cyt_B5_reductase	pfam_OxRdtase_FAD-bd_dom,pfam_Oxidoreductase-like_N,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Phe_hydroxylase	-	no_errors	CYB5RL	HGNC	ENSG00000215883	tier1	-	-	56	0	0.00	49	16	24.62
DDOST	0	genome.wustl.edu	37	1	20987472	20987472	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	20987472	20987472	T	A	SNP	DDOST	ENST00000375048	human	ensembl	74_37	-1	known	missense	c.218	p.E73V	1.000	pfam_WBP1	pfam_WBP1	-	no_errors	DDOST	HGNC	ENSG00000244038	tier1	-	-	75	0	0.00	46	22	32.35
DDX41	0	genome.wustl.edu	37	5	176940721	176940721	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	176940721	176940721	C	T	SNP	DDX41	ENST00000507955	human	ensembl	74_37	-1	known	missense	c.1063	p.E355K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258	tier1	-	-	49	0	0.00	31	5	13.89
DFNB31	0	genome.wustl.edu	37	9	117168862	117168862	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	117168862	117168862	G	A	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	missense	c.2009	p.A670V	0.998	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	tier1	-	-	79	0	0.00	36	42	53.85
DGKD	0	genome.wustl.edu	37	2	234367025	234367025	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	234367025	234367025	G	A	SNP	DGKD	ENST00000264057	human	ensembl	74_37	+1	known	silent	c.2676	p.Q892	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	tier1	-	-	32	0	0.00	39	4	9.30
DIAPH1	0	genome.wustl.edu	37	5	140953564	140953566	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	140953564	140953566	GGA	-	DEL	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	in_frame_del	c.1853_1851	p.P620in_frame_del	0.010:0.008:0.007	pfam_Formin_homology_1	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504	tier1			24	0	0.00	11	3	21.43
DMD	0	genome.wustl.edu	37	X	32503127	32503127	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	32503127	32503127	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.2712	p.P904	0.997	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	23	0	0.00	9	14	60.87
DMD	0	genome.wustl.edu	37	X	32503128	32503128	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	32503128	32503128	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.2711	p.P904H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	23	0	0.00	9	14	60.87
DMXL1	0	genome.wustl.edu	37	5	118576136	118576136	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	118576136	118576136	C	T	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.8674	p.L2892F	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	tier1	-	-	39	0	0.00	15	6	28.57
DOCK3	0	genome.wustl.edu	37	3	50927459	50927459	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	50927459	50927459	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.165	p.G55	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	tier1	-	-	48	0	0.00	29	17	36.17
DPY19L2P1	0	genome.wustl.edu	37	7	35121037	35121037	+	RNA	SNP	A	A	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	35121037	35121037	A	C	SNP	DPY19L2P1	ENST00000458672	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212	tier1	-	-	15	0	0.00	4	4	50.00
EBPL	0	genome.wustl.edu	37	13	50235208	50235209	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	13	50235208	50235209	-	A	INS	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_ins	c.517_516	p.N172fs	1.000:0.997	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179	tier1			53	0	0.00	35	3	7.89
EIF3E	0	genome.wustl.edu	37	8	109229586	109229586	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	109229586	109229586	C	T	SNP	EIF3E	ENST00000220849	human	ensembl	74_37	-1	known	missense	c.826	p.D276N	1.000	pirsf_eIF3e	pfam_eIF3e_N,pfam_PCI_dom,smart_PCI_dom,pirsf_eIF3e	-	no_errors	EIF3E	HGNC	ENSG00000104408	tier1	-	-	54	0	0.00	50	41	45.05
EIF3J	0	genome.wustl.edu	37	15	44846786	44846786	+	Silent	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	44846786	44846786	A	G	SNP	EIF3J	ENST00000261868	human	ensembl	74_37	+1	known	silent	c.330	p.P110	0.998	pfam_eIF3j	pfam_eIF3j	-	no_errors	EIF3J	HGNC	ENSG00000104131	tier1	-	-	58	0	0.00	45	13	22.41
ELMO2	0	genome.wustl.edu	37	20	45017766	45017766	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	45017766	45017766	C	G	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.337	p.D113H	1.000	superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	tier1	-	-	42	0	0.00	66	16	19.51
EML4	0	genome.wustl.edu	37	2	42508024	42508024	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	42508024	42508024	G	A	SNP	EML4	ENST00000318522	human	ensembl	74_37	+1	known	silent	c.702	p.R234	0.998	pfam_HELP	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924	tier1	-	-	65	0	0.00	72	4	5.26
EML5	0	genome.wustl.edu	37	14	89124637	89124637	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	89124637	89124637	G	A	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.3771	p.G1257	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	tier1	-	-	49	0	0.00	51	9	15.00
ENSG00000232765	0	genome.wustl.edu	37	X	55308300	55308300	+	RNA	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	55308300	55308300	A	G	SNP	ENSG00000232765	ENST00000440645	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-382F24.2	Clone_based_vega_gene	ENSG00000232765	tier1	-	-	35	0	0.00	7	16	69.57
ENSG00000237234	0	genome.wustl.edu	37	6	112476699	112476699	+	RNA	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	112476699	112476699	G	T	SNP	ENSG00000237234	ENST00000425503	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.156	-	-	-	no_errors	RP1-142L7.5	Clone_based_vega_gene	ENSG00000237234	tier1	-	-	27	0	0.00	20	3	13.04
ENSG00000252083	0	genome.wustl.edu	37	5	23972401	23972401	+	RNA	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	23972401	23972401	C	T	SNP	ENSG00000252083	ENST00000516274	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.569	-	-	-	no_errors	SNORA40	RFAM	ENSG00000252083	tier1	-	-	12	0	0.00	10	6	37.50
ENSG00000257743	0	genome.wustl.edu	37	7	141864787	141864787	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	141864787	141864787	C	T	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	silent	c.2616	p.T872	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743	tier1	-	-	34	0	0.00	47	8	14.29
ENSG00000258603	0	genome.wustl.edu	37	14	74083849	74083849	+	RNA	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	74083849	74083849	C	G	SNP	ENSG00000258603	ENST00000555011	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.971	-	-	-	no_errors	RP3-414A15.10	Clone_based_vega_gene	ENSG00000258603	tier1	-	-	59	0	0.00	39	24	38.10
ENSG00000260999	0	genome.wustl.edu	37	16	68961461	68961461	+	RNA	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	68961461	68961461	C	T	SNP	ENSG00000260999	ENST00000562790	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-521L9.1	Clone_based_vega_gene	ENSG00000260999	tier1	-	-	99	0	0.00	89	97	52.15
ERN2	0	genome.wustl.edu	37	16	23706340	23706340	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	23706340	23706340	C	T	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.2044	p.V682M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	tier1	-	-	73	0	0.00	54	19	26.03
ESYT3	0	genome.wustl.edu	37	3	138183220	138183220	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	138183220	138183220	C	T	SNP	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	nonsense	c.949	p.Q317*	0.068	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220	tier1	-	-	37	0	0.00	30	7	18.92
FAM205B	0	genome.wustl.edu	37	9	34832891	34832891	+	RNA	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	34832891	34832891	C	G	SNP	FAM205B	ENST00000455647	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM205B	HGNC	ENSG00000257198	tier1	-	-	129	0	0.00	70	30	30.00
FAM205B	0	genome.wustl.edu	37	9	34833094	34833094	+	RNA	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	34833094	34833094	G	T	SNP	FAM205B	ENST00000455647	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM205B	HGNC	ENSG00000257198	tier1	-	-	111	0	0.00	71	4	5.33
FAM78A	0	genome.wustl.edu	37	9	134134513	134134513	+	RNA	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	134134513	134134513	C	T	SNP	FAM78A	ENST00000247295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM78A	HGNC	ENSG00000126882	tier1	-	-	83	0	0.00	113	9	7.38
FANCM	0	genome.wustl.edu	37	14	45644391	45644391	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	45644391	45644391	C	G	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.2434	p.H812D	0.041	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				32	0	0.00	38	4	9.52
FASTKD3	0	genome.wustl.edu	37	5	7867383	7867383	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	7867383	7867383	C	T	SNP	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	missense	c.814	p.E272K	0.006	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				24	0	0.00	18	3	14.29
FHOD3	0	genome.wustl.edu	37	18	34298061	34298061	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	18	34298061	34298061	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.2275	p.R759W	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1	-	-	105	0	0.00	89	23	20.54
FMN2	0	genome.wustl.edu	37	1	240370836	240370836	+	Silent	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	240370836	240370836	G	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.2724	p.L908	0.614	smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	tier1	-	-	45	0	0.00	50	8	13.79
FOXR2	0	genome.wustl.edu	37	X	55650456	55650456	+	Silent	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	55650456	55650456	G	C	SNP	FOXR2	ENST00000339140	human	ensembl	74_37	+1	known	silent	c.312	p.L104	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR2	HGNC	ENSG00000189299	tier1	-	-	20	0	0.00	4	5	55.56
FSIP2	0	genome.wustl.edu	37	2	186669080	186669080	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	186669080	186669080	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.15314	p.R5105K	0.003	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	42	0	0.00	48	9	15.79
FZD7	0	genome.wustl.edu	37	2	202899887	202899887	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	202899887	202899887	G	T	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	missense	c.517	p.G173C	0.977	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760	tier1	-	-	74	0	0.00	50	4	7.41
GJB4	0	genome.wustl.edu	37	1	35227148	35227148	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	35227148	35227148	G	A	SNP	GJB4	ENST00000339480	human	ensembl	74_37	+1	known	missense	c.293	p.R98H	1.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433				45	0	0.00	35	2	5.41
GLB1	0	genome.wustl.edu	37	3	33060008	33060008	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	33060008	33060008	T	G	SNP	GLB1	ENST00000445488	human	ensembl	74_37	-1	known	missense	c.1423	p.S475R	0.995	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	tier1	-	-	92	0	0.00	55	16	22.54
GLP2R	0	genome.wustl.edu	37	17	9760839	9760839	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	9760839	9760839	C	T	SNP	GLP2R	ENST00000262441	human	ensembl	74_37	+1	known	silent	c.711	p.N237	0.654	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325	tier1	-	-	94	0	0.00	68	14	17.07
GLRA3	0	genome.wustl.edu	37	4	175644129	175644129	+	RNA	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	175644129	175644129	G	T	SNP	GLRA3	ENST00000436738	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.032	-	-	-	no_errors	GLRA3	HGNC	ENSG00000145451	tier1	-	-	47	0	0.00	36	4	10.00
GPR89A	0	genome.wustl.edu	37	1	145787778	145787778	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	145787778	145787778	A	C	SNP	GPR89A	ENST00000313835	human	ensembl	74_37	-1	known	missense	c.903	p.I301M	1.000	pfam_ABA_GPCR_dom	pfam_ABA_GPCR_dom,pfam_Golgi_pH-regulator_cons_dom	-	no_errors	GPR89A	HGNC	ENSG00000117262	tier1	-	-	52	0	0.00	53	14	20.90
HAGH	0	genome.wustl.edu	37	16	1859322	1859322	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	1859322	1859322	G	A	SNP	HAGH	ENST00000397356	human	ensembl	74_37	-1	known	missense	c.889	p.R297C	1.000	tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_errors	HAGH	HGNC	ENSG00000063854	tier1	-	-	52	0	0.00	56	4	6.67
HIP1R	0	genome.wustl.edu	37	12	123346457	123346457	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	123346457	123346457	G	A	SNP	HIP1R	ENST00000537322	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HIP1R	HGNC	ENSG00000130787	tier1	-	-	13	0	0.00	22	5	18.52
HIST1H4L	0	genome.wustl.edu	37	6	27841109	27841109	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	27841109	27841109	T	A	SNP	HIST1H4L	ENST00000355981	human	ensembl	74_37	-1	known	missense	c.180	p.K60N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4L	HGNC	ENSG00000198558	tier1	-	-	106	0	0.00	53	19	26.39
HIST1H4L	0	genome.wustl.edu	37	6	27841110	27841110	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	27841110	27841110	T	C	SNP	HIST1H4L	ENST00000355981	human	ensembl	74_37	-1	known	missense	c.179	p.K60R	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4L	HGNC	ENSG00000198558	tier1	-	-	104	0	0.00	54	18	25.00
HIVEP1	0	genome.wustl.edu	37	6	12125243	12125243	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	12125243	12125243	G	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	nonsense	c.5215	p.E1739*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	tier1	-	-	26	0	0.00	20	4	16.67
IARS2	0	genome.wustl.edu	37	1	220318982	220318982	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	220318982	220318982	C	T	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	silent	c.2883	p.L961	0.329	superfamily_tRNAsynth_1a_anticodon-bd	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				35	0	0.00	27	2	6.90
ICMT	0	genome.wustl.edu	37	1	6294509	6294509	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	6294509	6294509	G	A	SNP	ICMT	ENST00000362035	human	ensembl	74_37	-1	known	missense	c.347	p.P116L	1.000	NULL	NULL	-	no_errors	ICMT	HGNC	ENSG00000116237	tier1	-	-	39	0	0.00	33	14	29.79
IDH3B	0	genome.wustl.edu	37	20	2641145	2641145	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	2641145	2641145	T	C	SNP	IDH3B	ENST00000380843	human	ensembl	74_37	-1	known	missense	c.623	p.K208R	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3B	HGNC	ENSG00000101365	tier1	-	-	82	0	0.00	45	13	22.41
IL17D	0	genome.wustl.edu	37	13	21277449	21277449	+	RNA	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	13	21277449	21277449	T	C	SNP	IL17D	ENST00000498088	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	IL17D	HGNC	ENSG00000172458	tier1	-	-	47	0	0.00	27	4	12.90
INO80D	0	genome.wustl.edu	37	2	206869439	206869439	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	206869439	206869439	G	C	SNP	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	missense	c.2737	p.L913V	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	tier1	-	-	64	0	0.00	59	8	11.94
IQUB	0	genome.wustl.edu	37	7	123097574	123097574	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	123097574	123097574	G	C	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	nonsense	c.2054	p.S685*	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	tier1	-	-	50	0	0.00	67	6	8.22
KANK1	0	genome.wustl.edu	37	9	712721	712721	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	712721	712721	C	G	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.1955	p.T652S	0.997	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	tier1	-	-	27	0	0.00	10	10	50.00
KCNQ3	0	genome.wustl.edu	37	8	133492507	133492507	+	Silent	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	133492507	133492507	G	C	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	silent	c.273	p.T91	1.000	prints_K_chnl_volt-dep_KCNQ3	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	tier1	-	-	93	0	0.00	100	28	21.88
KEAP1	0	genome.wustl.edu	37	19	10610154	10610154	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	10610154	10610154	C	T	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	missense	c.556	p.G186S	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999	tier1	-	-	24	0	0.00	18	3	14.29
KIAA0319L	0	genome.wustl.edu	37	1	36020037	36020037	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	36020037	36020037	T	C	SNP	KIAA0319L	ENST00000325722	human	ensembl	74_37	-1	known	missense	c.56	p.Y19C	0.923	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687	tier1	-	-	47	0	0.00	30	13	30.23
KIAA0355	0	genome.wustl.edu	37	19	34839998	34839998	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	34839998	34839998	G	T	SNP	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	missense	c.2765	p.G922V	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398	tier1	-	-	82	0	0.00	76	4	5.00
KIAA1429	0	genome.wustl.edu	37	8	95547194	95547194	+	Silent	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	95547194	95547194	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	silent	c.357	p.C119	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	tier1	-	-	66	0	0.00	48	22	31.43
KLF1	0	genome.wustl.edu	37	19	12995819	12995819	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	12995819	12995819	C	T	SNP	KLF1	ENST00000264834	human	ensembl	74_37	-1	known	silent	c.969	p.S323	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF1	HGNC	ENSG00000105610	tier1	-	-	53	0	0.00	35	6	14.63
KLF7	0	genome.wustl.edu	37	2	207988643	207988643	+	Silent	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	207988643	207988643	A	G	SNP	KLF7	ENST00000309446	human	ensembl	74_37	-1	known	silent	c.588	p.S196	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	tier1	-	-	57	0	0.00	27	9	25.00
KLHDC2	0	genome.wustl.edu	37	14	50249303	50249303	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	50249303	50249303	C	T	SNP	KLHDC2	ENST00000298307	human	ensembl	74_37	+1	known	missense	c.1088	p.S363F	1.000	NULL	pfam_Kelch_2	-	no_errors	KLHDC2	HGNC	ENSG00000165516	tier1	-	-	36	0	0.00	28	4	12.50
KLHL14	0	genome.wustl.edu	37	18	30260215	30260215	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	18	30260215	30260215	T	C	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.1505	p.Q502R	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705	tier1	-	-	54	0	0.00	41	12	22.64
KLHL22	0	genome.wustl.edu	37	22	20819524	20819524	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	22	20819524	20819524	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	missense	c.733	p.R245W	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910	tier1	-	-	49	0	0.00	246	17	6.46
KMT2E	0	genome.wustl.edu	37	7	104703927	104703927	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	104703927	104703927	A	G	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.316	p.I106V	0.999	superfamily_Znf_FYVE_PHD	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483	tier1	-	-	38	0	0.00	49	12	19.67
KRT8	0	genome.wustl.edu	37	12	53292281	53292281	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	53292281	53292281	T	A	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.1225	p.M409L	0.979	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	tier1	-	-	89	0	0.00	82	13	13.68
LAMA2	0	genome.wustl.edu	37	6	129475680	129475680	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	129475680	129475680	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.1058	p.C353Y	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	46	0	0.00	21	7	25.00
LAMB2	0	genome.wustl.edu	37	3	49166737	49166737	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	49166737	49166737	G	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.1539	p.S513R	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037	tier1	-	-	22	0	0.00	15	4	21.05
LBP	0	genome.wustl.edu	37	20	36982828	36982828	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	36982828	36982828	G	A	SNP	LBP	ENST00000217407	human	ensembl	74_37	+1	known	silent	c.513	p.S171	0.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	LBP	HGNC	ENSG00000129988				26	0	0.00	25	5	16.67
LCT	0	genome.wustl.edu	37	2	136579638	136579638	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	136579638	136579638	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.938	p.G313E	0.996	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	tier1	-	-	81	0	0.00	53	12	18.46
LGSN	0	genome.wustl.edu	37	6	63989979	63989979	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	63989979	63989979	C	G	SNP	LGSN	ENST00000370657	human	ensembl	74_37	-1	known	missense	c.1477	p.E493Q	1.000	NULL	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166	tier1	-	-	35	0	0.00	16	4	20.00
LIN7C	0	genome.wustl.edu	37	11	27523398	27523398	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	27523398	27523398	T	C	SNP	LIN7C	ENST00000278193	human	ensembl	74_37	-1	known	missense	c.107	p.Q36R	1.000	pfam_L27_C,smart_L27,pirsf_Lin-7_homologue,pfscan_L27	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7C	HGNC	ENSG00000148943	tier1	-	-	65	0	0.00	60	4	6.25
LINC00937	0	genome.wustl.edu	37	12	8542937	8542937	+	RNA	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	8542937	8542937	C	A	SNP	LINC00937	ENST00000420040	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	LINC00937	HGNC	ENSG00000226091	tier1	-	-	27	0	0.00	48	9	15.79
LOC101928102	0	genome.wustl.edu	37	9	44869983	44869983	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	44869983	44869983	G	T	SNP	LOC101928102	ENST00000448436	human	ensembl	74_37	+1	putative	missense	c.119	p.C40F	0.546	NULL	NULL	-	no_errors	RP11-160N1.10	Clone_based_vega_gene	ENSG00000204814	tier1	-	-	340	0	0.00	252	23	8.36
LOC728715	0	genome.wustl.edu	37	12	9720700	9720700	+	RNA	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	9720700	9720700	A	G	SNP	LOC728715	ENST00000520314	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-726G1.1	Clone_based_vega_gene	ENSG00000214776				9	0	0.00	13	3	18.75
LOC730102	0	genome.wustl.edu	37	1	178006918	178006918	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	178006918	178006918	G	A	SNP	LOC730102	ENST00000476232	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-568K15.1	Clone_based_vega_gene	ENSG00000242193	tier1	-	-	26	0	0.00	26	9	25.71
LRIG2	0	genome.wustl.edu	37	1	113667283	113667283	+	RNA	DEL	T	T	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	113667283	113667283	T	-	DEL	LRIG2	ENST00000466161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	LRIG2	HGNC	ENSG00000198799	tier1			8	0	0.00	5	6	54.55
LRRC66	0	genome.wustl.edu	37	4	52861261	52861261	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	52861261	52861261	C	T	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.1927	p.A643T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	tier1	-	-	42	0	0.00	36	11	23.40
MAGEC3	0	genome.wustl.edu	37	X	140985578	140985578	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	140985578	140985578	C	A	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.1892	p.A631E	0.021	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	tier1	-	-	59	0	0.00	46	22	32.35
MAP3K9	0	genome.wustl.edu	37	14	71209128	71209128	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	71209128	71209128	C	A	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	missense	c.1507	p.G503C	1.000	pirsf_MAPKKK9/10/11,superfamily_Kinase-like_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432	tier1	-	-	53	0	0.00	48	16	25.00
MAPK3	0	genome.wustl.edu	37	16	30129094	30129094	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	30129094	30129094	C	T	SNP	MAPK3	ENST00000263025	human	ensembl	74_37	-1	known	silent	c.672	p.K224	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK3	HGNC	ENSG00000102882	tier1	-	-	40	0	0.00	26	8	23.53
MASP2	0	genome.wustl.edu	37	1	11105562	11105562	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	11105562	11105562	C	T	SNP	MASP2	ENST00000400897	human	ensembl	74_37	-1	known	silent	c.447	p.A149	0.069	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	tier1	-	-	140	0	0.00	112	28	20.00
MCC	0	genome.wustl.edu	37	5	112362988	112362988	+	RNA	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	112362988	112362988	G	T	SNP	MCC	ENST00000514701	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	83	0	0.00	76	4	5.00
MDN1	0	genome.wustl.edu	37	6	90459388	90459388	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	90459388	90459388	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.3489	p.A1163	0.953	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	tier1	-	-	38	0	0.00	11	7	38.89
MFSD8	0	genome.wustl.edu	37	4	128864988	128864988	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	128864988	128864988	G	T	SNP	MFSD8	ENST00000296468	human	ensembl	74_37	-1	known	missense	c.358	p.L120I	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073				36	0	0.00	35	2	5.41
MGAM	0	genome.wustl.edu	37	7	141740561	141740561	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	141740561	141740561	G	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.2413	p.E805Q	0.001	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	58	0	0.00	52	13	20.00
MIR3664	0	genome.wustl.edu	37	11	70718410	70718411	+	RNA	INS	-	-	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	70718410	70718411	-	A	INS	MIR3664	ENST00000579074	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR3664	HGNC	ENSG00000263744	tier1			53	0	0.00	37	29	43.94
MIR3664	0	genome.wustl.edu	37	11	70718415	70718415	+	RNA	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	70718415	70718415	A	G	SNP	MIR3664	ENST00000579074	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR3664	HGNC	ENSG00000263744	tier1	-	-	47	0	0.00	30	26	46.43
MIR567	0	genome.wustl.edu	37	3	111831723	111831724	+	RNA	INS	-	-	AAA			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	111831723	111831724	-	AAA	INS	MIR567	ENST00000385205	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR567	HGNC	ENSG00000207940	tier1			40	0	0.00	32	4	11.11
MIR744	0	genome.wustl.edu	37	17	11985228	11985228	+	RNA	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	11985228	11985228	C	T	SNP	MIR744	ENST00000578242	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR744	HGNC	ENSG00000266297	tier1	-	-	40	0	0.00	41	7	14.58
MNDA	0	genome.wustl.edu	37	1	158815756	158815756	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	158815756	158815756	C	A	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.950	p.S317Y	0.002	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	tier1	-	-	74	0	0.00	78	29	26.85
MTMR4	0	genome.wustl.edu	37	17	56569953	56569953	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	56569953	56569953	C	T	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.3329	p.R1110H	1.000	pfam_Znf_FYVE,smart_Znf_FYVE	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	tier1	-	-	42	0	0.00	37	14	27.45
MUC16	0	genome.wustl.edu	37	19	9073177	9073177	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	9073177	9073177	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.14269	p.P4757S	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	90	0	0.00	63	21	25.00
MYADM	0	genome.wustl.edu	37	19	54377333	54377333	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	54377333	54377333	G	T	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	missense	c.550	p.A184S	1.000	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820	tier1	-	-	53	0	0.00	27	10	27.03
MYH1	0	genome.wustl.edu	37	17	10408304	10408304	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	10408304	10408304	G	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.2514	p.F838L	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	tier1	-	-	83	0	0.00	43	45	51.14
MYO18B	0	genome.wustl.edu	37	22	26299712	26299712	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	22	26299712	26299712	G	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	nonsense	c.5062	p.E1688*	0.793	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				31	0	0.00	37	2	5.13
MYO7B	0	genome.wustl.edu	37	2	128370116	128370116	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	128370116	128370116	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	silent	c.3258	p.P1086	1.000	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	tier1	-	-	31	0	0.00	32	9	21.95
NCOA4	0	genome.wustl.edu	37	10	51584855	51584855	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	10	51584855	51584855	G	C	SNP	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	missense	c.1002	p.E334D	0.471	pfam_ARA70	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293	tier1	-	-	58	0	0.00	52	14	21.21
NDUFA8	0	genome.wustl.edu	37	9	124914553	124914553	+	Silent	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	124914553	124914553	C	A	SNP	NDUFA8	ENST00000373768	human	ensembl	74_37	-1	known	silent	c.186	p.L62	0.998	pirsf_NADH_Ub_cplx-1_asu_su-8	pfam_CHCH,pirsf_NADH_Ub_cplx-1_asu_su-8	-	no_errors	NDUFA8	HGNC	ENSG00000119421	tier1	-	-	23	0	0.00	25	11	30.56
NKRF	0	genome.wustl.edu	37	X	118722358	118722358	+	RNA	DEL	T	T	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	118722358	118722358	T	-	DEL	NKRF	ENST00000487600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.949	-	-	-	no_errors	NKRF	HGNC	ENSG00000186416	tier1			20	0	0.00	36	5	12.20
NME8	0	genome.wustl.edu	37	7	37934120	37934120	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	37934120	37934120	G	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.1452	p.K484N	0.004	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288	tier1	-	-	46	0	0.00	61	12	16.44
NPTX2	0	genome.wustl.edu	37	7	98256586	98256586	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	98256586	98256586	G	A	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.998	p.G333D	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	tier1	-	-	46	0	0.00	45	14	23.73
NUMBL	0	genome.wustl.edu	37	19	41173875	41173877	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	41173875	41173877	TGC	-	DEL	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	in_frame_del	c.1328_1326	p.Q446in_frame_del	0.967:0.971:0.977	pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245	tier1			26	0	0.00	16	3	15.79
NUP214	0	genome.wustl.edu	37	9	134019999	134019999	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	134019999	134019999	G	A	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.1627	p.A543T	0.008	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	tier1	-	-	32	0	0.00	50	4	7.41
OAS2	0	genome.wustl.edu	37	12	113440810	113440810	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	113440810	113440810	G	C	SNP	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	missense	c.1082	p.C361S	0.001	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	tier1	-	-	60	0	0.00	45	7	13.46
OAT	0	genome.wustl.edu	37	10	126097158	126097158	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	10	126097158	126097158	T	C	SNP	OAT	ENST00000368845	human	ensembl	74_37	-1	known	missense	c.473	p.Y158C	0.923	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	-	no_errors	OAT	HGNC	ENSG00000065154	tier1	-	-	63	0	0.00	41	16	28.07
OBSCN	0	genome.wustl.edu	37	1	228434246	228434246	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	228434246	228434246	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3775	p.A1259S	0.999	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	70	0	0.00	64	16	20.00
OLFM3	0	genome.wustl.edu	37	1	102312449	102312449	+	Silent	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	102312449	102312449	T	A	SNP	OLFM3	ENST00000338858	human	ensembl	74_37	-1	known	silent	c.81	p.P27	1.000	NULL	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM3	HGNC	ENSG00000118733	tier1	-	-	101	0	0.00	68	23	25.27
OMA1	0	genome.wustl.edu	37	1	58993006	58993006	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	58993006	58993006	T	C	SNP	OMA1	ENST00000371226	human	ensembl	74_37	-1	known	missense	c.1142	p.Y381C	0.554	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	tier1	-	-	58	0	0.00	43	10	18.87
OR4A16	0	genome.wustl.edu	37	11	55110883	55110883	+	Silent	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	55110883	55110883	C	A	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	silent	c.207	p.A69	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961	tier1	-	-	45	0	0.00	41	7	14.58
OR4K14	0	genome.wustl.edu	37	14	20482510	20482510	+	Silent	SNP	T	T	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	14	20482510	20482510	T	C	SNP	OR4K14	ENST00000305045	human	ensembl	74_37	-1	known	silent	c.843	p.P281	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K14	HGNC	ENSG00000169484	tier1	-	-	30	0	0.00	13	6	30.00
OR52L1	0	genome.wustl.edu	37	11	6007674	6007674	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	6007674	6007674	C	T	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.487	p.G163R	0.046	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313	tier1	-	-	64	0	0.00	28	13	31.71
OR7D4	0	genome.wustl.edu	37	19	9324685	9324685	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	9324685	9324685	T	G	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.829	p.M277L	0.020	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	tier1	-	-	55	0	0.00	32	6	15.79
PALM2-AKAP2	0	genome.wustl.edu	37	9	112642907	112642907	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	112642907	112642907	G	A	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.203	p.R68Q	1.000	pfam_Paralemmin	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654	tier1	-	-	32	0	0.00	39	4	9.30
PARP10	0	genome.wustl.edu	37	8	145059977	145059977	+	Silent	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	145059977	145059977	C	G	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	silent	c.348	p.S116	0.001	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685	tier1	-	-	28	0	0.00	29	6	17.14
PCDH19	0	genome.wustl.edu	37	X	99661679	99661679	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	99661679	99661679	C	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.1917	p.E639D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	tier1	-	-	20	0	0.00	9	12	57.14
PKD2	0	genome.wustl.edu	37	4	88929174	88929176	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	88929174	88929176	GAG	-	DEL	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	in_frame_del	c.289_291	p.E100in_frame_del	1.000:1.000:1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	tier1			30	0	0.00	35	4	10.26
PKDREJ	0	genome.wustl.edu	37	22	46652641	46652641	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	22	46652641	46652641	C	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.6579	p.M2193I	0.000	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	tier1	-	-	28	0	0.00	11	14	56.00
PLCB1	0	genome.wustl.edu	37	20	8741066	8741066	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	8741066	8741066	C	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.2669	p.A890V	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621	tier1	-	-	67	0	0.00	54	11	16.92
PLCG1	0	genome.wustl.edu	37	20	39800921	39800922	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	39800921	39800922	-	G	INS	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	frame_shift_ins	c.2897_2898	p.D966fs	0.999:0.993	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pirsf_PLC-gamma,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	tier1			71	0	0.00	54	8	12.90
PLOD1	0	genome.wustl.edu	37	1	12008070	12008070	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	12008070	12008070	C	T	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	silent	c.255	p.T85	0.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444	tier1	-	-	106	0	0.00	61	21	25.61
PLXNB2	0	genome.wustl.edu	37	22	50722588	50722588	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	22	50722588	50722588	C	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.2236	p.G746C	0.725	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				163	0	0.00	54	3	5.26
PLXNB2	0	genome.wustl.edu	37	22	50722589	50722589	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	22	50722589	50722589	G	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	nonsense	c.2235	p.Y745*	0.034	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				165	0	0.00	55	4	6.78
PMS1	0	genome.wustl.edu	37	2	190732645	190732645	+	Silent	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	190732645	190732645	A	G	SNP	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	silent	c.2463	p.K821	0.909	NULL	pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933	tier1	-	-	43	0	0.00	45	12	21.05
PNISR	0	genome.wustl.edu	37	6	99848035	99848036	+	RNA	INS	-	-	AA			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	99848035	99848036	-	AA	INS	PNISR	ENST00000481229	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.988:0.986	-	-	-	no_errors	PNISR	HGNC	ENSG00000132424	tier1			28	0	0.00	30	5	14.29
POLDIP2	0	genome.wustl.edu	37	17	26684529	26684529	+	RNA	DEL	G	G	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	26684529	26684529	G	-	DEL	POLDIP2	ENST00000003607	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	tier1			8	0	0.00	5	6	54.55
POLR3K	0	genome.wustl.edu	37	16	97516	97516	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	97516	97516	G	A	SNP	POLR3K	ENST00000293860	human	ensembl	74_37	-1	known	nonsense	c.241	p.Q81*	1.000	pfam_Znf_TFIIS,smart_Znf_TFIIS,pfscan_Znf_TFIIS	pfam_Znf_TFIIS,pfam_DNA-dir_RNA_pol_M/15kDasu,smart_DNA-dir_RNA_pol_M/15kDasu,smart_Znf_TFIIS,pfscan_Znf_TFIIS	-	no_errors	POLR3K	HGNC	ENSG00000161980	tier1	-	-	35	0	0.00	52	4	7.14
PRDM9	0	genome.wustl.edu	37	5	23527403	23527403	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	23527403	23527403	C	A	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.2206	p.L736I	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	tier1	-	-	78	0	0.00	63	14	18.18
PRG3	0	genome.wustl.edu	37	11	57147010	57147010	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	57147010	57147010	C	T	SNP	PRG3	ENST00000287143	human	ensembl	74_37	-1	known	missense	c.332	p.R111H	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575	tier1	-	-	63	0	0.00	36	12	25.00
PSD4	0	genome.wustl.edu	37	2	113942993	113942993	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	113942993	113942993	G	T	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.1225	p.V409L	0.004	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637	tier1	-	-	34	0	0.00	61	4	6.15
RAB10	0	genome.wustl.edu	37	2	26350815	26350815	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	26350815	26350815	C	T	SNP	RAB10	ENST00000264710	human	ensembl	74_37	+1	known	nonsense	c.514	p.R172*	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB10	HGNC	ENSG00000084733	tier1	-	-	46	0	0.00	72	22	23.40
RAP1GAP	0	genome.wustl.edu	37	1	21929326	21929326	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	21929326	21929326	G	C	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	missense	c.1701	p.I567M	0.763	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				46	0	0.00	37	3	7.50
RAPGEF1	0	genome.wustl.edu	37	9	134501526	134501526	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	134501526	134501526	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	silent	c.1488	p.Y496	0.864	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	tier1	-	-	60	0	0.00	40	18	31.03
RBMS1	0	genome.wustl.edu	37	2	161130979	161130982	+	RNA	DEL	TTTC	TTTC	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	TTTC	TTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	161130979	161130982	TTTC	-	DEL	RBMS1	ENST00000474820	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.121:0.138:0.129:0.057	-	-	-	no_errors	RBMS1	HGNC	ENSG00000153250	tier1			22	0	0.00	24	8	25.00
RECQL	0	genome.wustl.edu	37	12	21628683	21628683	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	21628683	21628683	C	A	SNP	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	missense	c.1025	p.G342V	0.832	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700	tier1	-	-	14	0	0.00	6	8	57.14
REG3A	0	genome.wustl.edu	37	2	79384410	79384410	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	79384410	79384410	C	A	SNP	REG3A	ENST00000305165	human	ensembl	74_37	-1	known	missense	c.470	p.R157M	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	REG3A	HGNC	ENSG00000172016	tier1	-	-	66	0	0.00	58	16	21.62
RELN	0	genome.wustl.edu	37	7	103143467	103143467	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	103143467	103143467	C	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	nonsense	c.8485	p.G2829*	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	135	0	0.00	97	29	23.02
RINT1	0	genome.wustl.edu	37	7	105206037	105206037	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	105206037	105206037	C	T	SNP	RINT1	ENST00000257700	human	ensembl	74_37	+1	known	missense	c.2128	p.R710W	0.986	pfam_RINT1_TIP1	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249	tier1	-	-	26	0	0.00	27	6	18.18
RNF126P1	0	genome.wustl.edu	37	17	55123062	55123062	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	55123062	55123062	G	A	SNP	RNF126P1	ENST00000567452	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RNF126P1	HGNC	ENSG00000261192	tier1	-	-	81	0	0.00	62	9	12.68
RNF145	0	genome.wustl.edu	37	5	158630641	158630642	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	158630641	158630642	-	T	INS	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	frame_shift_ins	c.75_74	p.K26fs	0.000:0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860	tier1			43	0	0.00	27	4	12.90
RP1	0	genome.wustl.edu	37	8	55540391	55540391	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	55540391	55540391	C	G	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.3949	p.Q1317E	0.218	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	tier1	-	-	135	0	0.00	97	28	22.40
RRBP1	0	genome.wustl.edu	37	20	17614113	17614113	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	17614113	17614113	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	nonsense	c.2602	p.Q868*	1.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	tier1	-	-	58	0	0.00	56	4	6.67
SELRC1	0	genome.wustl.edu	37	1	53163915	53163915	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	53163915	53163915	G	T	SNP	SELRC1	ENST00000371538	human	ensembl	74_37	-1	known	nonsense	c.84	p.C28*	1.000	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SELRC1	HGNC	ENSG00000162377				65	0	0.00	74	4	5.13
SENP3	0	genome.wustl.edu	37	17	7475156	7475156	+	RNA	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	7475156	7475156	T	A	SNP	SENP3	ENST00000578813	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956				12	0	0.00	14	3	17.65
SERPINH1	0	genome.wustl.edu	37	11	75277524	75277524	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	75277524	75277524	G	A	SNP	SERPINH1	ENST00000358171	human	ensembl	74_37	+1	known	missense	c.130	p.A44T	1.000	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257	tier1	-	-	51	0	0.00	25	14	35.90
SIN3A	0	genome.wustl.edu	37	15	75692462	75692462	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	75692462	75692462	C	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.1773	p.W591C	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	tier1	-	-	20	0	0.00	26	7	21.21
SIPA1L2	0	genome.wustl.edu	37	1	232575095	232575095	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	232575095	232575095	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.3790	p.D1264N	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	tier1	-	-	79	0	0.00	93	15	13.89
SKIDA1	0	genome.wustl.edu	37	10	21805720	21805720	+	Silent	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	10	21805720	21805720	A	G	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	silent	c.1032	p.H344	0.972	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				74	0	0.00	63	4	5.97
SLC11A1	0	genome.wustl.edu	37	2	219259680	219259680	+	Silent	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	219259680	219259680	C	A	SNP	SLC11A1	ENST00000233202	human	ensembl	74_37	+1	known	silent	c.1575	p.T525	0.000	NULL	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A1	HGNC	ENSG00000018280	tier1	-	-	63	0	0.00	56	7	11.11
SLC23A2	0	genome.wustl.edu	37	20	4893541	4893541	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	4893541	4893541	G	A	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	silent	c.192	p.N64	0.610	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				25	0	0.00	28	3	9.68
SLC30A4	0	genome.wustl.edu	37	15	45814394	45814394	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	45814394	45814394	G	A	SNP	SLC30A4	ENST00000261867	human	ensembl	74_37	-1	known	silent	c.159	p.D53	0.299	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154	tier1	-	-	52	0	0.00	51	4	7.27
SLC44A1	0	genome.wustl.edu	37	9	108127763	108127763	+	Splice_Site	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	108127763	108127763	G	C	SNP	SLC44A1	ENST00000374720	human	ensembl	74_37	+1	known	splice_site	c.1254-1	e11-1	1.000	-	-	-	no_errors	SLC44A1	HGNC	ENSG00000070214	tier1	-	-	98	0	0.00	59	33	34.74
SLCO4C1	0	genome.wustl.edu	37	5	101583042	101583042	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	101583042	101583042	C	T	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.1725	p.A575	0.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930	tier1	-	-	76	0	0.00	36	10	21.74
SMIM11	0	genome.wustl.edu	37	21	35774491	35774492	+	RNA	INS	-	-	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	21	35774491	35774492	-	T	INS	SMIM11	ENST00000481710	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	SMIM11	HGNC	ENSG00000205670	tier1			33	0	0.00	26	2	7.14
SNHG11	0	genome.wustl.edu	37	20	37076786	37076786	+	RNA	SNP	A	A	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	20	37076786	37076786	A	T	SNP	SNHG11	ENST00000365032	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	SNHG11	HGNC	ENSG00000174365	tier1	-	-	127	0	0.00	109	18	14.17
SNHG7	0	genome.wustl.edu	37	9	139621262	139621262	+	RNA	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	139621262	139621262	C	T	SNP	SNHG7	ENST00000391185	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.154	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016	tier1	-	-	50	0	0.00	31	7	18.42
SNORA30	0	genome.wustl.edu	37	16	30721919	30721919	+	RNA	SNP	A	A	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	30721919	30721919	A	T	SNP	SNORA30	ENST00000384028	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA30	HGNC	ENSG00000206755	tier1	-	-	43	0	0.00	45	12	21.05
SNX29	0	genome.wustl.edu	37	16	12162928	12162928	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	12162928	12162928	A	G	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.103	p.S35G	0.962	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471	tier1	-	-	57	0	0.00	39	15	27.78
SPATA31A3	0	genome.wustl.edu	37	9	40705844	40705844	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	40705844	40705844	C	G	SNP	SPATA31A3	ENST00000356699	human	ensembl	74_37	+1	known	missense	c.3501	p.I1167M	0.000	NULL	NULL	-	no_errors	SPATA31A3	HGNC	ENSG00000147926	tier1	-	-	85	0	0.00	55	19	25.68
SPG11	0	genome.wustl.edu	37	15	44905697	44905698	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	44905697	44905698	-	T	INS	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	frame_shift_ins	c.3076_3075	p.E1025fs	1.000:1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	tier1			29	0	0.00	32	2	5.88
SPOCK3	0	genome.wustl.edu	37	4	167656208	167656208	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	167656208	167656208	C	G	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	missense	c.1175	p.S392T	1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104	tier1	-	-	62	0	0.00	40	12	23.08
ST6GALNAC5	0	genome.wustl.edu	37	1	77510243	77510243	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	77510243	77510243	C	T	SNP	ST6GALNAC5	ENST00000477717	human	ensembl	74_37	+1	known	missense	c.616	p.R206C	0.988	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069				22	0	0.00	23	3	11.54
STARD7	0	genome.wustl.edu	37	2	96858916	96858916	+	RNA	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	96858916	96858916	C	A	SNP	STARD7	ENST00000462501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	STARD7	HGNC	ENSG00000084090	tier1	-	-	63	0	0.00	41	9	18.00
STK10	0	genome.wustl.edu	37	5	171614953	171614953	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	5	171614953	171614953	G	T	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	missense	c.94	p.P32T	1.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786	tier1	-	-	88	0	0.00	35	15	30.00
STRA13	0	genome.wustl.edu	37	17	79977072	79977072	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	79977072	79977072	C	T	SNP	STRA13	ENST00000584347	human	ensembl	74_37	-1	putative	missense	c.386	p.S129N	0.001	NULL	pfam_CENP-X	-	no_errors	STRA13	HGNC	ENSG00000169689	tier1	-	-	99	0	0.00	92	18	16.36
SYT14	0	genome.wustl.edu	37	1	210334142	210334142	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	210334142	210334142	C	T	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	missense	c.1615	p.R539C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469	tier1	-	-	44	0	0.00	36	8	18.18
TADA1	0	genome.wustl.edu	37	1	166829469	166829469	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	166829469	166829469	G	A	SNP	TADA1	ENST00000367874	human	ensembl	74_37	-1	known	missense	c.646	p.P216S	1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382				40	0	0.00	69	4	5.48
TAL1	0	genome.wustl.edu	37	1	47684909	47684909	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	47684909	47684909	G	A	SNP	TAL1	ENST00000459729	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TAL1	HGNC	ENSG00000162367	tier1	-	-	52	0	0.00	29	14	32.56
TAS2R16	0	genome.wustl.edu	37	7	122635287	122635287	+	Silent	SNP	C	C	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	122635287	122635287	C	G	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	silent	c.402	p.L134	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519	tier1	-	-	23	0	0.00	21	4	16.00
TAS2R31	0	genome.wustl.edu	37	12	11183889	11183889	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	11183889	11183889	G	C	SNP	TAS2R31	ENST00000390675	human	ensembl	74_37	-1	known	missense	c.46	p.L16V	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R31	HGNC	ENSG00000256436	tier1	-	-	41	0	0.00	60	29	32.22
TLE2	0	genome.wustl.edu	37	19	3005571	3005571	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	3005571	3005571	C	A	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.1760	p.G587V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	tier1	-	-	35	0	0.00	18	4	18.18
TMC1	0	genome.wustl.edu	37	9	75404064	75404064	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	75404064	75404064	C	A	SNP	TMC1	ENST00000297784	human	ensembl	74_37	+1	known	missense	c.1055	p.A352D	1.000	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091	tier1	-	-	9	0	0.00	5	9	64.29
TMEFF2	0	genome.wustl.edu	37	2	192863843	192863843	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	192863843	192863843	C	A	SNP	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	nonsense	c.628	p.E210*	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339	tier1	-	-	100	0	0.00	117	26	18.18
TNN	0	genome.wustl.edu	37	1	175066783	175066783	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	175066783	175066783	C	T	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	nonsense	c.1819	p.R607*	0.139	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	tier1	-	-	39	0	0.00	45	6	11.76
TP53	0	genome.wustl.edu	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	7578457	7578457	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.473	p.R158H	0.989	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	483	0	0.00	299	81	21.26
TP53	0	genome.wustl.edu	37	17	7578556	7578556	+	Splice_Site	SNP	T	T	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	17	7578556	7578556	T	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.376-2	e4-2	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	309	0	0.00	130	98	42.79
TRAIP	0	genome.wustl.edu	37	3	49867177	49867177	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	49867177	49867177	C	T	SNP	TRAIP	ENST00000331456	human	ensembl	74_37	-1	known	missense	c.1109	p.G370D	0.972	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763				32	0	0.00	13	3	18.75
TRIP10	0	genome.wustl.edu	37	19	6751205	6751205	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	6751205	6751205	C	T	SNP	TRIP10	ENST00000313244	human	ensembl	74_37	+1	known	nonsense	c.1789	p.R597*	0.991	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	tier1	-	-	35	0	0.00	23	7	23.33
TSPAN33	0	genome.wustl.edu	37	7	128802357	128802357	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	128802357	128802357	C	A	SNP	TSPAN33	ENST00000289407	human	ensembl	74_37	+1	known	missense	c.283	p.Q95K	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN33	HGNC	ENSG00000158457	tier1	-	-	64	0	0.00	39	13	25.00
TSPEAR	0	genome.wustl.edu	37	21	45949798	45949798	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	21	45949798	45949798	C	T	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.673	p.A225T	1.000	superfamily_ConA-like_lec_gl_sf	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894	tier1	rs146216896	-	42	0	0.00	49	8	14.04
TSPYL1	0	genome.wustl.edu	37	6	116600515	116600515	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	116600515	116600515	C	A	SNP	TSPYL1	ENST00000368608	human	ensembl	74_37	-1	known	missense	c.479	p.C160F	0.007	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241	tier1	-	-	156	0	0.00	67	25	27.17
TTC9C	0	genome.wustl.edu	37	11	62496120	62496120	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	62496120	62496120	G	T	SNP	TTC9C	ENST00000513247	human	ensembl	74_37	+1	known	missense	c.285	p.L95F	0.000	NULL	NULL	-	no_errors	TTC9C	HGNC	ENSG00000162222	tier1	-	-	68	0	0.00	73	4	5.19
TTN	0	genome.wustl.edu	37	2	179549092	179549092	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	179549092	179549092	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28955	p.A9652V	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	49	0	0.00	50	4	7.27
TTN	0	genome.wustl.edu	37	2	179575994	179575994	+	Silent	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	179575994	179575994	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.24237	p.A8079	0.008	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	72	0	0.00	65	11	14.47
UACA	0	genome.wustl.edu	37	15	70964305	70964305	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	70964305	70964305	G	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.1167	p.N389K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	tier1	-	-	27	0	0.00	32	4	11.11
UBAP2	0	genome.wustl.edu	37	9	33956094	33956094	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	9	33956094	33956094	G	T	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	missense	c.849	p.H283Q	0.013	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073				76	0	0.00	55	4	6.78
UGDH	0	genome.wustl.edu	37	4	39501789	39501789	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	4	39501789	39501789	G	T	SNP	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	missense	c.1459	p.P487T	1.000	NULL	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814	tier1	-	-	95	0	0.00	72	4	5.26
USH2A	0	genome.wustl.edu	37	1	216052380	216052380	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	216052380	216052380	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.8284	p.P2762T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				14	0	0.00	24	2	7.69
USP14	0	genome.wustl.edu	37	18	211238	211238	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	18	211238	211238	A	G	SNP	USP14	ENST00000261601	human	ensembl	74_37	+1	known	missense	c.1439	p.Y480C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557	tier1	-	-	38	0	0.00	41	8	16.33
USP33	0	genome.wustl.edu	37	1	78191334	78191334	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	78191334	78191334	G	A	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	missense	c.1342	p.P448S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254	tier1	-	-	59	0	0.00	73	5	6.41
USP8	0	genome.wustl.edu	37	15	50785054	50785054	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	50785054	50785054	C	T	SNP	USP8	ENST00000307179	human	ensembl	74_37	+1	known	silent	c.2391	p.N797	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592	tier1	rs199814360	-	38	0	0.00	35	4	10.26
VCL	0	genome.wustl.edu	37	10	75758009	75758009	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	10	75758009	75758009	C	T	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	missense	c.44	p.P15L	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	tier1	-	-	83	0	0.00	37	14	27.45
VNN1	0	genome.wustl.edu	37	6	133015315	133015315	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	133015315	133015315	G	A	SNP	VNN1	ENST00000367928	human	ensembl	74_37	-1	known	silent	c.348	p.G116	0.002	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299				67	0	0.00	31	3	8.82
VNN2	0	genome.wustl.edu	37	6	133072386	133072386	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	6	133072386	133072386	G	A	SNP	VNN2	ENST00000532053	human	ensembl	74_37	-1	known	missense	c.569	p.A190V	0.999	pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	tier1	-	-	39	0	0.00	19	10	34.48
WDR43	0	genome.wustl.edu	37	2	29150504	29150504	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	29150504	29150504	A	G	SNP	WDR43	ENST00000407426	human	ensembl	74_37	+1	known	missense	c.1243	p.I415V	0.014	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811	tier1	-	-	60	0	0.00	58	21	26.58
WDR52	0	genome.wustl.edu	37	3	113025140	113025140	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	3	113025140	113025140	G	A	SNP	WDR52	ENST00000393845	human	ensembl	74_37	-1	known	nonsense	c.4666	p.R1556*	1.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	tier1	-	-	94	0	0.00	97	16	14.16
WDR76	0	genome.wustl.edu	37	15	44158510	44158510	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	15	44158510	44158510	A	C	SNP	WDR76	ENST00000263795	human	ensembl	74_37	+1	known	missense	c.1801	p.M601L	0.522	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470	tier1	-	-	167	0	0.00	126	29	18.71
WRN	0	genome.wustl.edu	37	8	30982124	30982124	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	30982124	30982124	G	C	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.2717	p.S906T	0.472	tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	tier1	-	-	55	0	0.00	34	8	19.05
XIRP2	0	genome.wustl.edu	37	2	168101152	168101152	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	2	168101152	168101152	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3250	p.R1084G	0.507	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	40	0	0.00	37	10	21.28
XIST	0	genome.wustl.edu	37	X	73065303	73065304	+	RNA	INS	-	-	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	X	73065303	73065304	-	C	INS	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1			55	0	0.00	16	2	11.11
XKR5	0	genome.wustl.edu	37	8	6669476	6669476	+	RNA	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	8	6669476	6669476	G	A	SNP	XKR5	ENST00000405979	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	tier1	-	-	51	0	0.00	34	4	10.53
ZCCHC8	0	genome.wustl.edu	37	12	122958783	122958783	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	12	122958783	122958783	A	C	SNP	ZCCHC8	ENST00000336229	human	ensembl	74_37	-1	known	missense	c.1385	p.F462C	0.990	NULL	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030				15	0	0.00	15	3	16.67
ZFHX3	0	genome.wustl.edu	37	16	72828727	72828727	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	72828727	72828727	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.7854	p.L2618	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	tier1	rs139779175	-	80	0	0.00	60	4	6.25
ZFYVE9	0	genome.wustl.edu	37	1	52810443	52810443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	1	52810443	52810443	T	-	DEL	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	frame_shift_del	c.3943	p.F1316fs	1.000	pfam_DUF3480,pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	tier1			44	0	0.00	26	4	13.33
ZNF214	0	genome.wustl.edu	37	11	7021545	7021545	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	11	7021545	7021545	G	T	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.1369	p.L457I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				52	0	0.00	38	2	5.00
ZNF578	0	genome.wustl.edu	37	19	53014266	53014266	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	53014266	53014266	A	T	SNP	ZNF578	ENST00000421239	human	ensembl	74_37	+1	known	missense	c.632	p.N211I	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	tier1	-	-	74	0	0.00	45	10	18.18
ZNF582	0	genome.wustl.edu	37	19	56896193	56896193	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	56896193	56896193	G	T	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	missense	c.593	p.P198H	0.783	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869				59	0	0.00	47	3	6.00
ZNF646	0	genome.wustl.edu	37	16	31091869	31091869	+	Silent	SNP	G	G	A			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	16	31091869	31091869	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	silent	c.4224	p.A1408	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	tier1	-	-	102	0	0.00	61	29	32.22
ZNF655	0	genome.wustl.edu	37	7	99170870	99170870	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	99170870	99170870	A	G	SNP	ZNF655	ENST00000424881	human	ensembl	74_37	+1	known	missense	c.1244	p.Y415C	0.008	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343	tier1	-	-	32	0	0.00	19	9	32.14
ZNF679	0	genome.wustl.edu	37	7	63726929	63726929	+	Silent	SNP	C	C	T			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	7	63726929	63726929	C	T	SNP	ZNF679	ENST00000255746	human	ensembl	74_37	+1	known	silent	c.918	p.S306	0.018	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123	tier1	-	-	77	0	0.00	68	4	5.56
ZNF749	0	genome.wustl.edu	37	19	57955022	57955022	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A2-01A-31D-A27G-09	TCGA-LN-A4A2-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0428f112-5bb2-4587-b9e5-99c74ca18527	adec6642-1095-4cd8-9077-dd8f22d1cf14	19	57955022	57955022	A	G	SNP	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	missense	c.506	p.Q169R	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	tier1	-	-	44	0	0.00	26	9	25.00
