Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC6	0	genome.wustl.edu	37	16	16271331	16271331	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	16271331	16271331	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.2568	p.Q856	0.930	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	tier1	-	-	58	0	0.00	60	4	6.25
ADAMTS3	0	genome.wustl.edu	37	4	73169747	73169747	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	73169747	73169747	C	G	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	missense	c.2311	p.E771Q	1.000	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				64	0	0.00	34	4	10.53
ADCY8	0	genome.wustl.edu	37	8	131922004	131922004	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	8	131922004	131922004	C	G	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.1590	p.W530C	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	tier1	-	-	78	0	0.00	71	16	18.39
ADHFE1	0	genome.wustl.edu	37	8	67372632	67372632	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	8	67372632	67372632	G	C	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	+1	known	missense	c.1252	p.D418H	1.000	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576	tier1	-	-	58	0	0.00	44	20	31.25
ALG10	0	genome.wustl.edu	37	12	34179678	34179678	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	34179678	34179678	A	G	SNP	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	missense	c.1250	p.Y417C	1.000	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	tier1	-	-	104	0	0.00	94	15	13.76
ANGEL2	0	genome.wustl.edu	37	1	213180441	213180442	+	RNA	INS	-	-	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	213180441	213180442	-	A	INS	ANGEL2	ENST00000460337	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.007	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606	tier1			13	0	0.00	16	5	23.81
ANKRD27	0	genome.wustl.edu	37	19	33130212	33130212	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	33130212	33130212	G	T	SNP	ANKRD27	ENST00000587352	human	ensembl	74_37	-1	novel	missense	c.1166	p.P389H	0.006	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	ANKRD27	HGNC	ENSG00000105186	tier1	-	-	30	0	0.00	41	4	8.89
ANO5	0	genome.wustl.edu	37	11	22297708	22297708	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	22297708	22297708	T	C	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	missense	c.2483	p.V828A	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	tier1	-	-	62	0	0.00	76	10	11.63
APAF1	0	genome.wustl.edu	37	12	99126322	99126322	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	99126322	99126322	A	G	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	missense	c.3725	p.Y1242C	1.000	superfamily_WD40_repeat_dom,pirsf_Apoptotic_pept-activating_1	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868	tier1	-	-	27	0	0.00	32	5	13.51
ARAP2	0	genome.wustl.edu	37	4	36214868	36214868	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	36214868	36214868	G	T	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.1038	p.S346	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	50	0	0.00	34	4	10.53
ATP8B4	0	genome.wustl.edu	37	15	50366377	50366377	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	15	50366377	50366377	C	A	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	nonsense	c.34	p.E12*	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043	tier1	-	-	56	0	0.00	60	4	6.15
ATRNL1	0	genome.wustl.edu	37	10	117075177	117075177	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	117075177	117075177	G	T	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	nonsense	c.2968	p.E990*	1.000	pfam_Plexin_repeat,smart_Plexin-like_fold	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	tier1	-	-	58	0	0.00	56	4	6.67
BCLAF1	0	genome.wustl.edu	37	6	136596731	136596731	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	136596731	136596731	G	T	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	silent	c.1791	p.A597	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				135	0	0.00	95	9	8.57
BRD7	0	genome.wustl.edu	37	16	50368678	50368679	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	50368678	50368679	CT	-	DEL	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	frame_shift_del	c.831_830	p.E277fs	0.079:0.258	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	tier1			21	0	0.00	10	3	23.08
C10orf90	0	genome.wustl.edu	37	10	128192578	128192578	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	128192578	128192578	G	T	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.1482	p.S494R	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493	tier1	-	-	127	0	0.00	105	32	23.36
C1orf192	0	genome.wustl.edu	37	1	161335367	161335368	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	161335367	161335368	0	T	INS	C1orf192	ENST00000367974	human	ensembl	74_37	-1	known	frame_shift_ins	c.297_296	p.N99fs	0.977:0.985	NULL	NULL	-	no_errors	C1orf192	HGNC	ENSG00000188931				86	0	0.00	91	9	9.00
C3	0	genome.wustl.edu	37	19	6693004	6693004	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	6693004	6693004	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	silent	c.3321	p.L1107	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730	tier1	-	-	73	0	0.00	35	14	28.57
C4orf50	0	genome.wustl.edu	37	4	5990869	5990870	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	5990869	5990870	CT	-	DEL	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	frame_shift_del	c.630_629	p.E210fs	0.000:0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	tier1			41	0	0.00	30	4	11.76
C7orf49	0	genome.wustl.edu	37	7	134853654	134853654	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	134853654	134853654	C	G	SNP	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	missense	c.21	p.E7D	0.001	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				34	0	0.00	34	2	5.56
CALM1	0	genome.wustl.edu	37	14	90866417	90866417	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	14	90866417	90866417	G	A	SNP	CALM1	ENST00000356978	human	ensembl	74_37	+1	known	silent	c.12	p.Q4	1.000	NULL	pfam_EF_hand_dom,pfam_EF-hand_Ca_insen,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	CALM1	HGNC	ENSG00000198668	tier1	-	-	60	0	0.00	64	4	5.88
CCT6B	0	genome.wustl.edu	37	17	33255125	33255125	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	33255125	33255125	G	A	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	missense	c.1535	p.A512V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	tier1	-	-	93	0	0.00	57	34	37.36
CDH11	0	genome.wustl.edu	37	16	64984804	64984804	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	64984804	64984804	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1760	p.T587I	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	tier1	-	-	51	0	0.00	58	7	10.77
CDHR3	0	genome.wustl.edu	37	7	105668105	105668106	+	Splice_Site	INS	-	-	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	105668105	105668106	-	A	INS	CDHR3	ENST00000542731	human	ensembl	74_37	+1	known	splice_site_ins	c.2259-3_2259-2	e16-2	0.004:0.000	-	-	-	no_errors	CDHR3	HGNC	ENSG00000128536	tier1			48	0	0.00	58	10	14.71
CELSR1	0	genome.wustl.edu	37	22	46793652	46793652	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	22	46793652	46793652	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.5620	p.D1874N	0.878	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	tier1	rs141922879	-	113	0	0.00	77	19	19.79
CHD7	0	genome.wustl.edu	37	8	61763057	61763057	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	8	61763057	61763057	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.5410	p.E1804K	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	tier1	-	-	91	0	0.00	67	7	9.46
CHD9	0	genome.wustl.edu	37	16	53262985	53262985	+	Silent	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	53262985	53262985	A	G	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	silent	c.2259	p.Q753	1.000	smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				55	0	0.00	26	3	10.34
CHRD	0	genome.wustl.edu	37	3	184106703	184106703	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	184106703	184106703	G	A	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.2732	p.R911Q	1.000	smart_VWF_C,pirsf_Chordin	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	tier1	-	-	51	0	0.00	43	31	41.89
CITED2	0	genome.wustl.edu	37	6	139694663	139694663	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	139694663	139694663	G	T	SNP	CITED2	ENST00000367651	human	ensembl	74_37	-1	known	missense	c.419	p.P140H	1.000	pfam_CITED	pfam_CITED	-	no_errors	CITED2	HGNC	ENSG00000164442	tier1	-	-	45	0	0.00	55	4	6.78
COPE	0	genome.wustl.edu	37	19	19010510	19010510	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	19010510	19010510	A	G	SNP	COPE	ENST00000262812	human	ensembl	74_37	-1	known	missense	c.905	p.L302P	0.997	pfam_Coatomer_esu,pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	tier1	-	-	133	0	0.00	132	14	9.59
CPD	0	genome.wustl.edu	37	17	28772820	28772820	+	Silent	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	28772820	28772820	A	G	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	silent	c.2655	p.K885	0.929	smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582	tier1	-	-	48	0	0.00	47	4	7.84
CUEDC1	0	genome.wustl.edu	37	17	55950050	55950050	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	55950050	55950050	C	T	SNP	CUEDC1	ENST00000360238	human	ensembl	74_37	-1	known	missense	c.758	p.R253H	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	CUEDC1	HGNC	ENSG00000180891				77	0	0.00	75	4	5.06
CYYR1	0	genome.wustl.edu	37	21	27852733	27852733	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	21	27852733	27852733	C	T	SNP	CYYR1	ENST00000299340	human	ensembl	74_37	-1	known	silent	c.192	p.A64	0.699	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				35	0	0.00	24	3	11.11
DCAF6	0	genome.wustl.edu	37	1	168007624	168007624	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	168007624	168007624	A	T	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.1625	p.K542M	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				27	0	0.00	23	2	8.00
DGCR2	0	genome.wustl.edu	37	22	19048340	19048340	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	22	19048340	19048340	T	A	SNP	DGCR2	ENST00000545799	human	ensembl	74_37	-1	known	missense	c.745	p.R249W	0.000	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,pfscan_LDrepeatLR_classA_rpt	-	no_errors	DGCR2	HGNC	ENSG00000070413				38	0	0.00	32	3	8.57
DMTF1	0	genome.wustl.edu	37	7	86811353	86811354	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	86811353	86811354	0	T	INS	DMTF1	ENST00000394702	human	ensembl	74_37	+1	known	frame_shift_ins	c.731_732	p.F248fs	1.000:1.000	NULL	NULL	-	no_errors	DMTF1	HGNC	ENSG00000135164				54	0	0.00	120	7	5.51
DNAH7	0	genome.wustl.edu	37	2	196749416	196749416	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	196749416	196749416	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	nonsense	c.5656	p.R1886*	0.995	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				33	0	0.00	27	2	6.90
DOCK4	0	genome.wustl.edu	37	7	111509684	111509684	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	111509684	111509684	G	T	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	nonsense	c.2055	p.Y685*	0.935	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				51	0	0.00	37	2	5.13
EID2	0	genome.wustl.edu	37	19	40030187	40030187	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	40030187	40030187	C	T	SNP	EID2	ENST00000390658	human	ensembl	74_37	-1	known	missense	c.533	p.R178H	0.996	NULL	NULL	-	no_errors	EID2	HGNC	ENSG00000176396	tier1	-	-	65	0	0.00	39	4	9.30
ELAC2	0	genome.wustl.edu	37	17	12898129	12898129	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	12898129	12898129	C	G	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	missense	c.1981	p.V661L	0.541	pfam_Beta-lactamas-like	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	tier1	-	-	23	0	0.00	9	4	30.77
ELOVL1	0	genome.wustl.edu	37	1	43830658	43830658	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	43830658	43830658	T	A	SNP	ELOVL1	ENST00000372458	human	ensembl	74_37	-1	known	missense	c.259	p.S87C	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL1	HGNC	ENSG00000066322	tier1	-	-	27	0	0.00	18	10	35.71
ENSG00000219926	0	genome.wustl.edu	37	13	64415472	64415472	+	RNA	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	13	64415472	64415472	C	A	SNP	ENSG00000219926	ENST00000607822	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-394A14.2	Clone_based_vega_gene	ENSG00000219926	tier1	-	-	14	0	0.00	4	8	66.67
ENSG00000228980	0	genome.wustl.edu	37	3	109136698	109136698	+	RNA	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	109136698	109136698	C	T	SNP	ENSG00000228980	ENST00000489670	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	RP11-702L6.4	Clone_based_vega_gene	ENSG00000228980				50	0	0.00	51	5	8.93
ENSG00000234277	0	genome.wustl.edu	37	1	227618722	227618722	+	RNA	DEL	A	A	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	227618722	227618722	A	-	DEL	ENSG00000234277	ENST00000445817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.163	-	-	-	no_errors	CTD-2090I13.1	Clone_based_vega_gene	ENSG00000234277	tier1			12	0	0.00	9	3	25.00
ENSG00000234810	0	genome.wustl.edu	37	1	56197233	56197233	+	RNA	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	56197233	56197233	T	C	SNP	ENSG00000234810	ENST00000422374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	RP11-466L17.1	Clone_based_vega_gene	ENSG00000234810	tier1	-	-	12	0	0.00	18	8	30.77
EPHA5	0	genome.wustl.edu	37	4	66213881	66213881	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	66213881	66213881	A	C	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.2549	p.I850R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	tier1	-	-	54	0	0.00	32	6	15.79
F2	0	genome.wustl.edu	37	11	46751011	46751011	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	46751011	46751011	G	A	SNP	F2	ENST00000311907	human	ensembl	74_37	+1	known	silent	c.1554	p.G518	0.037	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1,prints_Prothrombin/thrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	tier1	-	-	37	0	0.00	32	25	43.86
FAF1	0	genome.wustl.edu	37	1	50941345	50941345	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	50941345	50941345	G	A	SNP	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	missense	c.1660	p.R554W	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104				39	0	0.00	38	2	5.00
FAM135A	0	genome.wustl.edu	37	6	71236246	71236246	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	71236246	71236246	G	T	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.3459	p.L1153F	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				44	0	0.00	53	4	7.02
FAM157C	0	genome.wustl.edu	37	16	90173100	90173100	+	RNA	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	90173100	90173100	C	A	SNP	FAM157C	ENST00000563357	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528	tier1	-	-	110	0	0.00	110	24	17.91
FAM214B	0	genome.wustl.edu	37	9	35106349	35106349	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	9	35106349	35106349	T	A	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	missense	c.1118	p.E373V	1.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				42	0	0.00	31	2	6.06
FLJ40448	0	genome.wustl.edu	37	16	88809254	88809254	+	RNA	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	88809254	88809254	C	T	SNP	FLJ40448	ENST00000333666	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RP5-1142A6.8	Clone_based_vega_gene	ENSG00000182376	tier1	-	-	14	0	0.00	10	4	28.57
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74819776	74819776	+	Silent	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	74819776	74819776	A	G	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	silent	c.1482	p.K494	0.999	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				60	0	0.00	42	3	6.67
FRMPD3	0	genome.wustl.edu	37	X	106803587	106803587	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	X	106803587	106803587	C	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.962	p.T321I	0.478	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234	tier1	-	-	15	0	0.00	11	7	38.89
FUZ	0	genome.wustl.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	50310483	50310485	CAG	-	DEL	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	in_frame_del	c.1182_1180	p.L394in_frame_del	0.279:0.838:0.863	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361	tier1			44	0	0.00	45	5	10.00
GAS2L2	0	genome.wustl.edu	37	17	34074204	34074204	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	34074204	34074204	G	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.916	p.Q306K	0.848	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139	tier1	-	-	74	0	0.00	56	14	20.00
GCN1L1	0	genome.wustl.edu	37	12	120569744	120569744	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	120569744	120569744	T	C	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.7400	p.Q2467R	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	tier1	-	-	39	0	0.00	30	7	18.92
GDF2	0	genome.wustl.edu	37	10	48413931	48413931	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	48413931	48413931	T	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	missense	c.937	p.T313S	0.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	tier1	-	-	56	0	0.00	35	13	27.08
GLI3	0	genome.wustl.edu	37	7	42004063	42004063	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	42004063	42004063	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.4608	p.S1536	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	tier1	-	-	63	0	0.00	48	25	34.25
GLT1D1	0	genome.wustl.edu	37	12	129373274	129373274	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	129373274	129373274	T	G	SNP	GLT1D1	ENST00000442111	human	ensembl	74_37	+1	known	missense	c.308	p.V103G	0.980	NULL	pfam_Glyco_trans_1	-	no_errors	GLT1D1	HGNC	ENSG00000151948				56	0	0.00	54	3	5.26
GON4L	0	genome.wustl.edu	37	1	155785777	155785777	+	RNA	DEL	A	A	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	155785777	155785777	A	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	tier1			18	0	0.00	10	4	28.57
GPM6A	0	genome.wustl.edu	37	4	176555905	176555905	+	RNA	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	176555905	176555905	C	T	SNP	GPM6A	ENST00000506219	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	GPM6A	HGNC	ENSG00000150625	tier1	-	-	78	0	0.00	51	7	12.07
GPR98	0	genome.wustl.edu	37	5	90024645	90024645	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	90024645	90024645	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.10321	p.G3441W	0.001	pfscan_EAR	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				97	0	0.00	73	4	5.19
HDAC4	0	genome.wustl.edu	37	2	239990219	239990219	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	239990219	239990219	G	-	DEL	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_del	c.2820	p.T941fs	0.986	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	tier1			29	0	0.00	25	2	7.41
HDAC9	0	genome.wustl.edu	37	7	18674352	18674352	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	18674352	18674352	C	T	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	missense	c.899	p.T300I	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	tier1	-	-	124	0	0.00	102	23	18.40
HIST2H2BF	0	genome.wustl.edu	37	1	149783891	149783891	+	RNA	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	149783891	149783891	A	G	SNP	HIST2H2BF	ENST00000469483	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814	tier1	-	-	95	0	0.00	66	19	22.35
IGF2R	0	genome.wustl.edu	37	6	160471650	160471650	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	160471650	160471650	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.2660	p.T887M	0.147	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	tier1	-	-	56	0	0.00	30	11	26.83
IRGC	0	genome.wustl.edu	37	19	44223370	44223370	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	44223370	44223370	G	A	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	silent	c.660	p.P220	0.000	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	tier1	-	-	12	0	0.00	16	4	20.00
KCNH6	0	genome.wustl.edu	37	17	61613295	61613295	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	61613295	61613295	G	A	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	missense	c.1367	p.G456D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826	tier1	-	-	72	0	0.00	77	9	10.47
KCNQ2	0	genome.wustl.edu	37	20	62045497	62045497	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	62045497	62045497	G	A	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	silent	c.1491	p.C497	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	tier1	-	-	93	0	0.00	67	66	49.62
KIAA0907	0	genome.wustl.edu	37	1	155891416	155891416	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	155891416	155891416	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	missense	c.1016	p.Y339C	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	tier1	-	-	55	0	0.00	35	11	23.91
KIF13A	0	genome.wustl.edu	37	6	17849622	17849622	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	17849622	17849622	G	T	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	silent	c.816	p.G272	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	tier1	-	-	73	0	0.00	58	4	6.45
KIF1B	0	genome.wustl.edu	37	1	10356990	10356990	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	10356990	10356990	C	A	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.1759	p.R587S	1.000	superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	tier1	-	-	30	0	0.00	18	3	14.29
KMT2D	0	genome.wustl.edu	37	12	49426055	49426055	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	49426055	49426055	G	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.12433	p.P4145T	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1	-	-	41	0	0.00	38	4	9.52
KRT18P59	0	genome.wustl.edu	37	11	124984117	124984117	+	RNA	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	124984117	124984117	G	T	SNP	KRT18P59	ENST00000534728	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	KRT18P59	HGNC	ENSG00000187686	tier1	-	-	32	0	0.00	13	3	18.75
LIPJ	0	genome.wustl.edu	37	10	90366476	90366476	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	90366476	90366476	G	A	SNP	LIPJ	ENST00000371939	human	ensembl	74_37	+1	known	missense	c.913	p.A305T	0.391	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPJ	HGNC	ENSG00000204022	tier1	-	-	57	0	0.00	66	4	5.71
LRRC34	0	genome.wustl.edu	37	3	169526464	169526464	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	169526464	169526464	G	C	SNP	LRRC34	ENST00000446859	human	ensembl	74_37	-1	known	missense	c.209	p.P70R	0.009	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757	tier1	-	-	57	0	0.00	68	5	6.85
LUC7L3	0	genome.wustl.edu	37	17	48829869	48829869	+	RNA	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	48829869	48829869	C	G	SNP	LUC7L3	ENST00000503798	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	LUC7L3	HGNC	ENSG00000108848	tier1	-	-	58	0	0.00	42	6	12.50
MC4R	0	genome.wustl.edu	37	18	58038995	58038995	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	18	58038995	58038995	G	T	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	nonsense	c.588	p.C196*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				52	0	0.00	36	3	7.69
ME2	0	genome.wustl.edu	37	18	48450549	48450549	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	18	48450549	48450549	G	A	SNP	ME2	ENST00000321341	human	ensembl	74_37	+1	known	missense	c.1138	p.A380T	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212	tier1	-	-	55	0	0.00	54	4	6.90
MFN2	0	genome.wustl.edu	37	1	12049265	12049265	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	12049265	12049265	G	T	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.40	p.V14F	0.920	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				55	0	0.00	40	3	6.98
MID1	0	genome.wustl.edu	37	X	10417677	10417677	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	X	10417677	10417677	G	A	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	missense	c.1735	p.R579C	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	tier1	-	-	11	0	0.00	7	12	63.16
MKI67	0	genome.wustl.edu	37	10	129902236	129902236	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	129902236	129902236	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.7868	p.T2623M	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1	-	-	117	0	0.00	91	33	26.61
MME	0	genome.wustl.edu	37	3	154886358	154886358	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	154886358	154886358	C	A	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.1858	p.Q620K	0.871	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549	tier1	-	-	71	0	0.00	78	9	10.34
MON2	0	genome.wustl.edu	37	12	62936944	62936944	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	62936944	62936944	T	A	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	missense	c.2432	p.I811N	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	tier1	-	-	112	0	0.00	63	6	8.70
MROH9	0	genome.wustl.edu	37	1	170985377	170985377	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	170985377	170985377	A	G	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	missense	c.1808	p.Q603R	0.189	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501	tier1	-	-	97	0	0.00	69	5	6.76
MUC4	0	genome.wustl.edu	37	3	195505314	195505314	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	195505314	195505314	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12803	p.P4268L	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	rs142178516	-	49	0	0.00	90	25	21.74
MYO1C	0	genome.wustl.edu	37	17	1378125	1378125	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	1378125	1378125	A	G	SNP	MYO1C	ENST00000359786	human	ensembl	74_37	-1	known	missense	c.1697	p.L566P	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879	tier1	-	-	40	0	0.00	25	21	45.65
NEB	0	genome.wustl.edu	37	2	152471049	152471049	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	152471049	152471049	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.11342	p.R3781Q	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	106	0	0.00	106	16	13.11
NFE2L3	0	genome.wustl.edu	37	7	26225269	26225269	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	26225269	26225269	G	A	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.1951	p.D651N	1.000	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	tier1	-	-	45	0	0.00	57	15	20.83
NPIPB7	0	genome.wustl.edu	37	16	28468188	28468188	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	28468188	28468188	C	A	SNP	NPIPB7	ENST00000452313	human	ensembl	74_37	-1	novel	nonsense	c.802	p.E268*	0.027	NULL	NULL	-	no_errors	NPIPB7	HGNC	ENSG00000233232	tier1	-	-	137	0	0.00	93	43	31.39
NTRK1	0	genome.wustl.edu	37	1	156844776	156844776	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	156844776	156844776	C	T	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.1330	p.R444W	1.000	prints_Tyr_kinase_neurotrophic_rcpt_1	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	tier1	-	-	40	0	0.00	20	3	13.04
OBSCN	0	genome.wustl.edu	37	1	228467068	228467068	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	228467068	228467068	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.7319	p.R2440Q	0.059	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	122	0	0.00	181	15	7.65
OR51T1	0	genome.wustl.edu	37	11	4904034	4904034	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	4904034	4904034	G	A	SNP	OR51T1	ENST00000380378	human	ensembl	74_37	+1	known	missense	c.986	p.R329H	0.964	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900	tier1	rs151076376	-	62	0	0.00	35	20	36.36
OR51V1	0	genome.wustl.edu	37	11	5221161	5221161	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	5221161	5221161	A	G	SNP	OR51V1	ENST00000321255	human	ensembl	74_37	-1	known	missense	c.770	p.V257A	0.664	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	tier1	-	-	81	0	0.00	56	5	8.20
PARVB	0	genome.wustl.edu	37	22	44515695	44515695	+	RNA	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	22	44515695	44515695	G	T	SNP	PARVB	ENST00000402876	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PARVB	HGNC	ENSG00000188677	tier1	-	-	60	0	0.00	58	4	6.45
PIGN	0	genome.wustl.edu	37	18	59755997	59755997	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	18	59755997	59755997	A	G	SNP	PIGN	ENST00000357637	human	ensembl	74_37	-1	known	missense	c.2362	p.F788L	1.000	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563				25	0	0.00	25	3	10.71
PLCB4	0	genome.wustl.edu	37	20	9440415	9440415	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	9440415	9440415	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.3170	p.A1057V	0.625	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	tier1	-	-	26	0	0.00	36	4	10.00
PLCZ1	0	genome.wustl.edu	37	12	18854614	18854614	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	18854614	18854614	C	T	SNP	PLCZ1	ENST00000538330	human	ensembl	74_37	-1	putative	missense	c.184	p.E62K	0.250	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_Pinositol-sp_Y,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	tier1	-	-	37	0	0.00	27	4	12.90
PLXNA2	0	genome.wustl.edu	37	1	208200421	208200421	+	RNA	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	208200421	208200421	C	T	SNP	PLXNA2	ENST00000483048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	49	0	0.00	44	4	8.33
PLXNA2	0	genome.wustl.edu	37	1	208225774	208225774	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	208225774	208225774	C	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.2891	p.G964V	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				66	0	0.00	60	4	6.25
PPRC1	0	genome.wustl.edu	37	10	103901475	103901475	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	103901475	103901475	G	T	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	silent	c.3210	p.V1070	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	tier1	-	-	33	0	0.00	12	6	33.33
PROCA1	0	genome.wustl.edu	37	17	27031779	27031779	+	Silent	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	27031779	27031779	A	G	SNP	PROCA1	ENST00000439862	human	ensembl	74_37	-1	known	silent	c.180	p.C60	0.853	pfam_PLipase_A2,superfamily_PLipase_A2_dom	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PROCA1	HGNC	ENSG00000167525	tier1	-	-	39	0	0.00	48	11	18.64
PSD4	0	genome.wustl.edu	37	2	113958885	113958885	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	113958885	113958885	T	C	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.3064	p.S1022P	0.918	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				25	0	0.00	32	3	8.57
PTPN1	0	genome.wustl.edu	37	20	49195059	49195059	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	49195059	49195059	C	T	SNP	PTPN1	ENST00000371621	human	ensembl	74_37	+1	known	nonsense	c.595	p.R199*	0.969	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN1	HGNC	ENSG00000196396	tier1	-	-	42	0	0.00	67	6	8.22
RASGRF2	0	genome.wustl.edu	37	5	80382767	80382767	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	80382767	80382767	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.1385	p.R462H	1.000	smart_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	tier1	-	-	46	0	0.00	26	4	13.33
RIPK4	0	genome.wustl.edu	37	21	43171399	43171399	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	21	43171399	43171399	C	A	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.481	p.D161Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421	tier1	-	-	53	0	0.00	32	27	45.76
RPS14	0	genome.wustl.edu	37	5	149827255	149827255	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	149827255	149827255	G	T	SNP	RPS14	ENST00000312037	human	ensembl	74_37	-1	known	silent	c.42	p.V14	1.000	pirsf_Ribosomal_S11	pfam_Ribosomal_S11,pirsf_Ribosomal_S11	-	no_errors	RPS14	HGNC	ENSG00000164587	tier1	-	-	54	0	0.00	28	17	37.78
SCNM1	0	genome.wustl.edu	37	1	151139087	151139087	+	RNA	SNP	T	T	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	151139087	151139087	T	C	SNP	SCNM1	ENST00000471039	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.028	-	-	-	no_errors	SCNM1	HGNC	ENSG00000163156	tier1	-	-	18	0	0.00	16	4	20.00
SEL1L2	0	genome.wustl.edu	37	20	13867034	13867034	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	13867034	13867034	G	T	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.800	p.T267K	0.999	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				53	0	0.00	55	4	6.67
SENP6	0	genome.wustl.edu	37	6	76412676	76412676	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	6	76412676	76412676	G	T	SNP	SENP6	ENST00000370014	human	ensembl	74_37	+1	known	silent	c.2604	p.A868	0.160	pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701				21	0	0.00	21	2	8.70
SERINC3	0	genome.wustl.edu	37	20	43142614	43142614	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	43142614	43142614	G	A	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	missense	c.107	p.T36M	0.997	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824	tier1	-	-	64	0	0.00	65	4	5.80
SGIP1	0	genome.wustl.edu	37	1	67109411	67109412	+	RNA	DEL	TG	TG	-			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	67109411	67109412	TG	-	DEL	SGIP1	ENST00000483060	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.058:0.051	-	-	-	no_errors	SGIP1	HGNC	ENSG00000118473	tier1			52	0	0.00	26	2	7.14
SH3YL1	0	genome.wustl.edu	37	2	262569	262569	+	RNA	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	262569	262569	T	A	SNP	SH3YL1	ENST00000468321	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH3YL1	HGNC	ENSG00000035115	tier1	-	-	40	0	0.00	20	7	25.93
SLC37A2	0	genome.wustl.edu	37	11	124950542	124950542	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	124950542	124950542	A	C	SNP	SLC37A2	ENST00000308074	human	ensembl	74_37	+1	known	missense	c.560	p.H187P	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	tier1	-	-	56	0	0.00	29	4	12.12
SLC7A5	0	genome.wustl.edu	37	16	87868078	87868078	+	Silent	SNP	G	G	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	87868078	87868078	G	C	SNP	SLC7A5	ENST00000261622	human	ensembl	74_37	-1	known	silent	c.1410	p.P470	0.019	pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257	tier1	-	-	64	0	0.00	51	17	25.00
SLC9A8	0	genome.wustl.edu	37	20	48467300	48467301	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	48467300	48467301	-	T	INS	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	frame_shift_ins	c.536_537	p.F183fs	0.284:0.189	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	tier1			14	0	0.00	20	3	13.04
SMG1	0	genome.wustl.edu	37	16	18858815	18858815	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	18858815	18858815	C	T	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.5956	p.D1986N	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	tier1	-	-	38	0	0.00	42	6	12.50
SOGA2	0	genome.wustl.edu	37	18	8825247	8825247	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	18	8825247	8825247	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.3739	p.R1247W	1.000	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502	tier1	-	-	49	0	0.00	50	18	26.47
SOX30	0	genome.wustl.edu	37	5	157075856	157075856	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	157075856	157075856	C	T	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.1016	p.R339Q	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600	tier1	-	-	69	0	0.00	72	4	5.26
SPATA31D3	0	genome.wustl.edu	37	9	84562614	84562614	+	RNA	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	9	84562614	84562614	G	A	SNP	SPATA31D3	ENST00000334208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPATA31D3	HGNC	ENSG00000186788				47	0	0.00	33	3	8.33
SPEF2	0	genome.wustl.edu	37	5	35695845	35695845	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	35695845	35695845	G	T	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.1984	p.A662S	0.000	superfamily_P-loop_NTPase	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	tier1	-	-	66	0	0.00	70	4	5.41
SPG21	0	genome.wustl.edu	37	15	65267023	65267023	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	15	65267023	65267023	G	T	SNP	SPG21	ENST00000204566	human	ensembl	74_37	-1	known	missense	c.369	p.H123Q	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487	tier1	-	-	30	0	0.00	30	9	23.08
TBC1D10B	0	genome.wustl.edu	37	16	30370527	30370527	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	30370527	30370527	C	T	SNP	TBC1D10B	ENST00000409939	human	ensembl	74_37	-1	known	silent	c.1608	p.S536	0.797	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	tier1	-	-	30	0	0.00	44	4	8.33
TENC1	0	genome.wustl.edu	37	12	53453482	53453482	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	53453482	53453482	C	A	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	missense	c.2087	p.A696D	0.006	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	tier1	-	-	47	0	0.00	59	10	14.49
TEX10	0	genome.wustl.edu	37	9	103092356	103092356	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	9	103092356	103092356	G	T	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.1346	p.T449N	1.000	superfamily_ARM-type_fold	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	tier1	-	-	77	0	0.00	60	4	6.25
TFPI	0	genome.wustl.edu	37	2	188348894	188348894	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	188348894	188348894	A	T	SNP	TFPI	ENST00000233156	human	ensembl	74_37	-1	known	missense	c.585	p.N195K	0.003	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI	HGNC	ENSG00000003436	tier1	-	-	32	0	0.00	29	5	14.71
TLR2	0	genome.wustl.edu	37	4	154625944	154625944	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	4	154625944	154625944	A	G	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	missense	c.1885	p.R629G	0.912	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	tier1	-	-	64	0	0.00	51	4	7.27
TM9SF1	0	genome.wustl.edu	37	14	24661561	24661561	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	14	24661561	24661561	G	T	SNP	TM9SF1	ENST00000556387	human	ensembl	74_37	-1	known	silent	c.1596	p.G532	1.000	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926	tier1	-	-	59	0	0.00	50	4	7.41
TMEM132C	0	genome.wustl.edu	37	12	129153998	129153998	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	12	129153998	129153998	A	G	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	missense	c.1342	p.K448E	0.981	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	74	0	0.00	44	5	10.20
TMF1	0	genome.wustl.edu	37	3	69088134	69088134	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	3	69088134	69088134	C	T	SNP	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	silent	c.1863	p.E621	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	tier1	-	-	35	0	0.00	18	4	18.18
TMOD3	0	genome.wustl.edu	37	15	52179895	52179895	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	15	52179895	52179895	G	T	SNP	TMOD3	ENST00000308580	human	ensembl	74_37	+1	known	missense	c.393	p.L131F	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594	tier1	-	-	51	0	0.00	44	4	8.33
TMPRSS4	0	genome.wustl.edu	37	11	117973848	117973848	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	117973848	117973848	T	A	SNP	TMPRSS4	ENST00000437212	human	ensembl	74_37	+1	known	missense	c.190	p.C64S	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648	tier1	-	-	75	0	0.00	64	29	31.18
TP53	0	genome.wustl.edu	37	17	7577058	7577058	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	17	7577058	7577058	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.880	p.E294*	0.015	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	483	0	0.00	207	171	45.24
TSHZ3	0	genome.wustl.edu	37	19	31769449	31769449	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	31769449	31769449	G	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.1250	p.S417Y	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				60	0	0.00	27	2	6.90
UBN1	0	genome.wustl.edu	37	16	4921188	4921188	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	4921188	4921188	T	G	SNP	UBN1	ENST00000262376	human	ensembl	74_37	+1	known	missense	c.1592	p.L531R	1.000	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900	tier1	-	-	76	0	0.00	49	29	37.18
WDR20	0	genome.wustl.edu	37	14	102675610	102675610	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	14	102675610	102675610	G	T	SNP	WDR20	ENST00000454394	human	ensembl	74_37	+1	known	missense	c.1196	p.R399L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	tier1	-	-	47	0	0.00	42	4	8.70
WDR24	0	genome.wustl.edu	37	16	736118	736118	+	Silent	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	736118	736118	G	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	silent	c.1791	p.L597	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	tier1	-	-	49	0	0.00	52	4	7.14
WDR37	0	genome.wustl.edu	37	10	1142172	1142172	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	10	1142172	1142172	G	T	SNP	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	missense	c.712	p.V238F	0.002	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056	tier1	-	-	71	0	0.00	53	4	7.02
ZC2HC1A	0	genome.wustl.edu	37	8	79609678	79609678	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	8	79609678	79609678	G	T	SNP	ZC2HC1A	ENST00000263849	human	ensembl	74_37	+1	known	nonsense	c.541	p.G181*	0.997	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427				49	0	0.00	51	3	5.56
ZC3H12C	0	genome.wustl.edu	37	11	110008026	110008026	+	Silent	SNP	G	G	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	11	110008026	110008026	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	silent	c.660	p.R220	0.998	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				81	0	0.00	55	3	5.17
ZFP36L2	0	genome.wustl.edu	37	2	43452439	43452440	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	2	43452439	43452440	0	CA	INS	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	frame_shift_ins	c.504_503	p.K169fs	1.000:1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				72	0	0.00	93	10	9.71
ZGPAT	0	genome.wustl.edu	37	20	62366325	62366325	+	RNA	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	62366325	62366325	G	T	SNP	ZGPAT	ENST00000478385	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.333	-	-	-	no_errors	ZGPAT	HGNC	ENSG00000197114	tier1	-	-	53	0	0.00	53	7	11.67
ZGPAT	0	genome.wustl.edu	37	20	62366327	62366327	+	RNA	SNP	G	G	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	62366327	62366327	G	C	SNP	ZGPAT	ENST00000478385	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.159	-	-	-	no_errors	ZGPAT	HGNC	ENSG00000197114	tier1	-	-	54	0	0.00	51	7	11.86
ZNF341	0	genome.wustl.edu	37	20	32377396	32377396	+	Splice_Site	SNP	T	T	A			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	20	32377396	32377396	T	A	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	splice_site	c.2035+2	e14+2	1.000	-	-	-	no_errors	ZNF341	HGNC	ENSG00000131061	tier1	-	-	50	0	0.00	33	25	43.10
ZNF582	0	genome.wustl.edu	37	19	56895810	56895810	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	19	56895810	56895810	A	C	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	missense	c.976	p.L326V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869	tier1	-	-	59	0	0.00	30	3	9.09
ZNF608	0	genome.wustl.edu	37	5	123984497	123984497	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	5	123984497	123984497	G	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.1580	p.S527Y	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	tier1	-	-	78	0	0.00	66	4	5.71
ZNF684	0	genome.wustl.edu	37	1	41007085	41007086	+	RNA	INS	-	-	ACCT			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	1	41007085	41007086	-	ACCT	INS	ZNF684	ENST00000472043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.004	-	-	-	no_errors	ZNF684	HGNC	ENSG00000117010	tier1			20	0	0.00	16	3	15.79
ZNF804B	0	genome.wustl.edu	37	7	88965762	88965762	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	88965762	88965762	G	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.3466	p.D1156Y	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				42	0	0.00	59	7	10.61
ZNF815P	0	genome.wustl.edu	37	7	5887309	5887309	+	RNA	SNP	C	C	G			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	7	5887309	5887309	C	G	SNP	ZNF815P	ENST00000422825	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF815P	HGNC	ENSG00000235944	tier1	rs201257714	-	22	0	0.00	18	5	21.74
ZSCAN32	0	genome.wustl.edu	37	16	3433044	3433044	+	Silent	SNP	C	C	T			TCGA-LN-A4A3-01A-11D-A27G-09	TCGA-LN-A4A3-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dc0442d2-daac-420a-a896-40c6d28acf91	f7ee30f1-f1a3-450b-9dd1-8bdd40875311	16	3433044	3433044	C	T	SNP	ZSCAN32	ENST00000396846	human	ensembl	74_37	-1	known	silent	c.1902	p.K634	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN32	HGNC	ENSG00000140987	tier1	-	-	134	0	0.00	140	8	5.37
