Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AATK	0	genome.wustl.edu	37	17	79094681	79094681	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	79094681	79094681	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	nonsense	c.3055	p.R1019*	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409	tier1	-	-	41	0	0.00	18	24	57.14
ABCC11	0	genome.wustl.edu	37	16	48209220	48209220	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	48209220	48209220	G	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.3647	p.S1216Y	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270	tier1	-	-	38	0	0.00	26	31	53.45
ABCC9	0	genome.wustl.edu	37	12	22005402	22005402	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	22005402	22005402	T	C	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2543	p.D848G	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431	tier1	-	-	42	0	0.00	46	10	17.86
ACAP2	0	genome.wustl.edu	37	3	195027311	195027311	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	195027311	195027311	G	A	SNP	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	missense	c.1045	p.R349C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331	tier1	-	-	40	0	0.00	47	11	18.97
ACSM1	0	genome.wustl.edu	37	16	20702457	20702457	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	20702457	20702457	G	A	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	silent	c.54	p.H18	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743	tier1	-	-	117	0	0.00	56	33	37.08
ADAMTSL1	0	genome.wustl.edu	37	9	18795491	18795491	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	9	18795491	18795491	C	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	silent	c.3774	p.Y1258	0.945	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				43	0	0.00	40	3	6.98
ADCY8	0	genome.wustl.edu	37	8	132052018	132052018	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	132052018	132052018	G	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.562	p.L188M	0.956	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	tier1	-	-	16	0	0.00	22	10	31.25
AFF2	0	genome.wustl.edu	37	X	148035142	148035142	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	X	148035142	148035142	C	T	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.1430	p.A477V	0.001	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	tier1	-	-	35	0	0.00	36	4	10.00
AHDC1	0	genome.wustl.edu	37	1	27875978	27875978	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	27875978	27875978	C	T	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	silent	c.2649	p.R883	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705	tier1	-	-	42	0	0.00	20	23	53.49
ALKBH3	0	genome.wustl.edu	37	11	43904237	43904237	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	43904237	43904237	G	A	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	missense	c.35	p.G12E	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199	tier1	-	-	26	0	0.00	3	12	80.00
ALMS1	0	genome.wustl.edu	37	2	73613031	73613032	+	In_Frame_Ins	INS	-	-	GGA			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	73613031	73613032	-	GGA	INS	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	in_frame_ins	c.35_36	p.16in_frame_insE	0.999:0.989	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1			20	0	0.00	21	6	22.22
ALMS1	0	genome.wustl.edu	37	2	73827964	73827964	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	73827964	73827964	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.11825	p.P3942L	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1	-	-	39	0	0.00	27	9	25.00
ALS2CR11	0	genome.wustl.edu	37	2	202358876	202358877	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	202358876	202358877	-	T	INS	ALS2CR11	ENST00000439140	human	ensembl	74_37	-1	novel	frame_shift_ins	c.2188_2187	p.Q729fs	0.578:0.000	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	tier1			48	0	0.00	32	2	5.88
ANKRD30B	0	genome.wustl.edu	37	18	14778005	14778005	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	14778005	14778005	C	G	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.1351	p.Q451E	0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777	tier1	-	-	17	0	0.00	10	12	54.55
ANXA2R	0	genome.wustl.edu	37	5	43039891	43039891	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	43039891	43039891	C	T	SNP	ANXA2R	ENST00000314890	human	ensembl	74_37	-1	known	silent	c.258	p.A86	0.000	NULL	NULL	-	no_errors	ANXA2R	HGNC	ENSG00000177721	tier1	-	-	61	0	0.00	41	22	34.92
AP3M2	0	genome.wustl.edu	37	8	42025256	42025256	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	42025256	42025256	G	T	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	missense	c.1084	p.A362S	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				20	0	0.00	65	4	5.80
APOBR	0	genome.wustl.edu	37	16	28507417	28507417	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	28507417	28507417	A	G	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	missense	c.1055	p.E352G	0.010	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	tier1	rs365499	-	27	0	0.00	15	6	28.57
ATP2C1	0	genome.wustl.edu	37	3	130716559	130716559	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	130716559	130716559	A	G	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.2455	p.I819V	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260	tier1	-	-	82	0	0.00	47	44	48.35
BBS5	0	genome.wustl.edu	37	2	170350315	170350315	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	170350315	170350315	G	T	SNP	BBS5	ENST00000554017	human	ensembl	74_37	+1	known	missense	c.587	p.S196I	1.000	pfam_BBL5,smart_DM16_repeat	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093	tier1	-	-	65	0	0.00	43	5	10.42
C10orf112	0	genome.wustl.edu	37	10	19493307	19493307	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	10	19493307	19493307	C	T	SNP	C10orf112	ENST00000454679	human	ensembl	74_37	+1	known	silent	c.63	p.F21	0.998	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740	tier1	-	-	50	0	0.00	36	13	26.53
C14orf37	0	genome.wustl.edu	37	14	58604975	58604975	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	58604975	58604975	C	A	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	missense	c.1102	p.G368W	0.068	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	tier1	-	-	41	0	0.00	30	24	44.44
C5orf42	0	genome.wustl.edu	37	5	37139474	37139475	+	Splice_Site	INS	-	-	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	37139474	37139475	-	A	INS	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	splice_site_ins	c.8471-3_8471-2	e43-2	0.993:0.043	-	-	-	no_errors	C5orf42	HGNC	ENSG00000197603	tier1			45	0	0.00	32	4	11.11
C6orf201	0	genome.wustl.edu	37	6	4099372	4099372	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	4099372	4099372	A	G	SNP	C6orf201	ENST00000333388	human	ensembl	74_37	+1	known	missense	c.233	p.K78R	0.255	NULL	NULL	-	no_errors	C6orf201	HGNC	ENSG00000185689	tier1	-	-	55	0	0.00	10	26	72.22
CACNA1H	0	genome.wustl.edu	37	16	1261734	1261734	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	1261734	1261734	G	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.4495	p.V1499L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				32	0	0.00	21	2	8.70
CACNG5	0	genome.wustl.edu	37	17	64876781	64876781	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	64876781	64876781	G	C	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	missense	c.391	p.A131P	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429	tier1	-	-	63	0	0.00	51	16	23.88
CARD11	0	genome.wustl.edu	37	7	2963891	2963891	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	2963891	2963891	A	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.1916	p.M639K	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	tier1	-	-	50	0	0.00	52	8	13.33
CASP8	0	genome.wustl.edu	37	2	202151220	202151220	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	202151220	202151220	A	G	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	missense	c.1520	p.Y507C	0.004	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	tier1	-	-	36	0	0.00	15	29	65.91
CASZ1	0	genome.wustl.edu	37	1	10718607	10718607	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	10718607	10718607	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.1367	p.A456V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				72	0	0.00	58	5	7.81
CBL	0	genome.wustl.edu	37	11	119077233	119077233	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	119077233	119077233	C	T	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	missense	c.106	p.H36Y	0.999	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	tier1	-	-	22	0	0.00	7	19	73.08
CCDC171	0	genome.wustl.edu	37	9	15744551	15744551	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	9	15744551	15744551	C	G	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	nonsense	c.2330	p.S777*	0.997	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989	tier1	-	-	33	0	0.00	14	7	33.33
CCDC27	0	genome.wustl.edu	37	1	3677911	3677911	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	3677911	3677911	G	T	SNP	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	nonsense	c.778	p.E260*	0.541	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	tier1	-	-	31	0	0.00	12	11	47.83
CCDC7	0	genome.wustl.edu	37	10	32807402	32807402	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	10	32807402	32807402	A	-	DEL	CCDC7	ENST00000277657	human	ensembl	74_37	+1	known	frame_shift_del	c.962	p.N322fs	1.000	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937	tier1			24	0	0.00	27	2	6.90
CD36	0	genome.wustl.edu	37	7	80302674	80302674	+	Silent	SNP	A	A	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	80302674	80302674	A	C	SNP	CD36	ENST00000309881	human	ensembl	74_37	+1	known	silent	c.1203	p.V401	0.106	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	tier1	-	-	25	0	0.00	21	5	19.23
CENPC	0	genome.wustl.edu	37	4	68385049	68385049	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	68385049	68385049	G	T	SNP	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	missense	c.503	p.S168Y	0.013	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241	tier1	-	-	47	0	0.00	60	4	6.25
CENPE	0	genome.wustl.edu	37	4	104116291	104116291	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	104116291	104116291	T	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.457	p.I153V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	tier1	-	-	25	0	0.00	13	29	69.05
CEP350	0	genome.wustl.edu	37	1	180064685	180064685	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	180064685	180064685	C	T	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	nonsense	c.8539	p.Q2847*	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1	-	-	18	0	0.00	16	9	36.00
CISD2	0	genome.wustl.edu	37	4	103806549	103806549	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	103806549	103806549	A	T	SNP	CISD2	ENST00000273986	human	ensembl	74_37	+1	known	missense	c.280	p.T94S	0.121	pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	pfam_FeS-contain_mitoNEET_N,pfam_FeS-contain_CDGSH-typ,smart_FeS-contain_CDGSH-typ_subfam	-	no_errors	CISD2	HGNC	ENSG00000145354	tier1	-	-	50	0	0.00	35	17	32.69
CNGB3	0	genome.wustl.edu	37	8	87641177	87641177	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	87641177	87641177	C	T	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.1450	p.E484K	1.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289	tier1	-	-	84	0	0.00	80	15	15.79
CNN2	0	genome.wustl.edu	37	19	1036246	1036246	+	Splice_Site	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	1036246	1036246	G	A	SNP	CNN2	ENST00000263097	human	ensembl	74_37	+1	known	splice_site	c.507+1	e5+1	1.000	-	-	-	no_errors	CNN2	HGNC	ENSG00000064666	tier1	-	-	49	0	0.00	32	5	13.51
COL4A6	0	genome.wustl.edu	37	X	107431880	107431880	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	X	107431880	107431880	C	T	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.1457	p.G486D	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	tier1	-	-	28	0	0.00	10	10	50.00
CREBBP	0	genome.wustl.edu	37	16	3781439	3781439	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	3781439	3781439	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.4926	p.V1642	0.665	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				14	0	0.00	14	6	30.00
CUBN	0	genome.wustl.edu	37	10	16949507	16949507	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	10	16949507	16949507	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.7705	p.V2569M	1.000	superfamily_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	tier1	-	-	50	0	0.00	53	18	25.35
DAB2IP	0	genome.wustl.edu	37	9	124535315	124535315	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	9	124535315	124535315	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2508	p.A836	0.476	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	tier1	-	-	14	0	0.00	12	7	36.84
DACH1	0	genome.wustl.edu	37	13	72063217	72063217	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	13	72063217	72063217	T	C	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.1796	p.H599R	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	tier1	-	-	46	0	0.00	45	6	11.76
DDX11L9	0	genome.wustl.edu	37	15	102516816	102516816	+	RNA	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	15	102516816	102516816	G	T	SNP	DDX11L9	ENST00000559159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	tier1	-	-	15	0	0.00	8	3	27.27
DKK2	0	genome.wustl.edu	37	4	107845807	107845807	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	107845807	107845807	G	C	SNP	DKK2	ENST00000285311	human	ensembl	74_37	-1	novel	missense	c.424	p.L142V	1.000	NULL	pfam_Dickkopf_N,superfamily_Zn2-C6_fun-type_DNA-bd	-	no_errors	DKK2	HGNC	ENSG00000155011	tier1	-	-	49	0	0.00	35	27	43.55
DNAH11	0	genome.wustl.edu	37	7	21730409	21730409	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	21730409	21730409	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.5972	p.T1991I	0.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	-	-	42	0	0.00	49	5	9.26
DNAH11	0	genome.wustl.edu	37	7	21750323	21750323	+	Splice_Site	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	21750323	21750323	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	splice_site	c.6855+2	e42+2	1.000	-	-	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	-	-	43	0	0.00	70	15	17.65
DOCK5	0	genome.wustl.edu	37	8	25190123	25190123	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	25190123	25190123	T	C	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.2006	p.L669S	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	tier1	-	-	46	0	0.00	29	15	34.09
DSC3	0	genome.wustl.edu	37	18	28588320	28588320	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	28588320	28588320	G	T	SNP	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	silent	c.1435	p.R479	0.233	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762				53	0	0.00	26	2	7.14
DSCAM	0	genome.wustl.edu	37	21	41648175	41648175	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	21	41648175	41648175	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.2205	p.Q735	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587	tier1	-	-	30	0	0.00	24	3	11.11
DSCR3	0	genome.wustl.edu	37	21	38600086	38600086	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	21	38600086	38600086	C	T	SNP	DSCR3	ENST00000309117	human	ensembl	74_37	-1	known	missense	c.680	p.R227H	0.997	pfam_VPS26	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538				57	0	0.00	58	4	6.45
DTX2	0	genome.wustl.edu	37	7	76129758	76129758	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	76129758	76129758	G	A	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	missense	c.1151	p.G384E	0.938	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073	tier1	rs147644708	-	20	0	0.00	1	2	66.67
EEF1DP3	0	genome.wustl.edu	37	13	32527507	32527508	+	RNA	DEL	GT	GT	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	13	32527507	32527508	GT	-	DEL	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.035	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715	tier1			22	0	0.00	25	2	7.41
EEF2	0	genome.wustl.edu	37	19	3982327	3982327	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	3982327	3982327	G	A	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	silent	c.708	p.F236	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				45	0	0.00	24	3	11.11
EML3	0	genome.wustl.edu	37	11	62372637	62372638	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	62372637	62372638	CA	-	DEL	EML3	ENST00000529309	human	ensembl	74_37	-1	known	frame_shift_del	c.1930_1929	p.A644fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499	tier1			64	0	0.00	20	37	64.91
ENOX1	0	genome.wustl.edu	37	13	43986993	43986993	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	13	43986993	43986993	T	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.58	p.M20L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	tier1	-	-	66	0	0.00	35	22	38.60
ENOX1	0	genome.wustl.edu	37	13	43986994	43986994	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	13	43986994	43986994	C	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.57	p.Q19H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	tier1	-	-	65	0	0.00	35	22	38.60
ENSG00000221279	0	genome.wustl.edu	37	7	110568408	110568409	+	RNA	DEL	CA	CA	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	110568408	110568409	CA	-	DEL	ENSG00000221279	ENST00000408352	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	AC005161.1	Clone_based_ensembl_gene	ENSG00000221279	tier1			10	0	0.00	3	3	50.00
ENSG00000236233	0	genome.wustl.edu	37	9	67793683	67793683	+	RNA	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	9	67793683	67793683	A	T	SNP	ENSG00000236233	ENST00000315762	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.063	-	-	-	no_errors	RP11-12A20.7	Clone_based_vega_gene	ENSG00000236233				12	0	0.00	12	4	25.00
ENSG00000244306	0	genome.wustl.edu	37	14	19856372	19856372	+	RNA	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	19856372	19856372	A	G	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306				13	0	0.00	17	3	15.00
ENSG00000248243	0	genome.wustl.edu	37	3	129813035	129813035	+	RNA	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	129813035	129813035	G	A	SNP	ENSG00000248243	ENST00000514010	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RP11-93K22.13	Clone_based_vega_gene	ENSG00000248243	tier1	-	-	14	0	0.00	16	7	30.43
ENSG00000248243	0	genome.wustl.edu	37	3	129813036	129813036	+	RNA	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	129813036	129813036	C	A	SNP	ENSG00000248243	ENST00000514010	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-93K22.13	Clone_based_vega_gene	ENSG00000248243	tier1	-	-	15	0	0.00	17	8	32.00
ENSG00000272769	0	genome.wustl.edu	37	2	133104171	133104172	+	RNA	INS	-	-	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	133104171	133104172	-	T	INS	ENSG00000272769	ENST00000608279	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046:0.010	-	-	-	no_errors	RP11-725P16.2	Clone_based_vega_gene	ENSG00000272769	tier1			8	0	0.00	3	6	66.67
EPHA2	0	genome.wustl.edu	37	1	16460076	16460076	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	16460076	16460076	G	A	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	silent	c.1764	p.Y588	0.126	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	tier1	rs148209354	-	39	0	0.00	25	25	50.00
FAM177A1	0	genome.wustl.edu	37	14	35515698	35515698	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	35515698	35515698	T	C	SNP	FAM177A1	ENST00000280987	human	ensembl	74_37	+1	known	missense	c.29	p.L10P	0.012	NULL	NULL	-	no_errors	FAM177A1	HGNC	ENSG00000151327	tier1	-	-	58	0	0.00	280	54	16.17
FAM230B	0	genome.wustl.edu	37	22	21538257	21538257	+	RNA	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	22	21538257	21538257	G	C	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	26	0	0.00	16	10	38.46
FCGR3A	0	genome.wustl.edu	37	1	161519619	161519619	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	161519619	161519619	C	T	SNP	FCGR3A	ENST00000367969	human	ensembl	74_37	-1	known	missense	c.16	p.G6R	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3A	HGNC	ENSG00000203747	tier1	-	-	75	0	0.00	54	14	20.59
FILIP1L	0	genome.wustl.edu	37	3	99568272	99568273	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	99568272	99568273	-	T	INS	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_ins	c.2248_2247	p.L749fs	1.000:1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	tier1			42	0	0.00	22	2	8.33
FREM3	0	genome.wustl.edu	37	4	144614306	144614306	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	144614306	144614306	G	T	SNP	FREM3	ENST00000329798	human	ensembl	74_37	-1	putative	missense	c.5235	p.N1745K	0.948	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC	ENSG00000183090				44	0	0.00	30	2	6.25
FUT5	0	genome.wustl.edu	37	19	5867206	5867206	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	5867206	5867206	G	A	SNP	FUT5	ENST00000252675	human	ensembl	74_37	-1	known	silent	c.531	p.D177	0.996	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	tier1	-	-	42	0	0.00	32	7	17.95
GAS5	0	genome.wustl.edu	37	1	173835048	173835048	+	RNA	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	173835048	173835048	G	A	SNP	GAS5	ENST00000425771	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GAS5	HGNC	ENSG00000234741	tier1	-	-	62	0	0.00	57	4	6.56
GIF	0	genome.wustl.edu	37	11	59610015	59610015	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	59610015	59610015	C	G	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	missense	c.412	p.A138P	1.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812	tier1	-	-	48	0	0.00	29	9	23.68
GINS2	0	genome.wustl.edu	37	16	85712254	85712254	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	85712254	85712254	C	T	SNP	GINS2	ENST00000253462	human	ensembl	74_37	-1	known	silent	c.324	p.P108	0.947	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	pfam_GINS_complex,pirsf_GINS_Psf2_subgr	-	no_errors	GINS2	HGNC	ENSG00000131153	tier1	-	-	11	0	0.00	7	4	36.36
GPR4	0	genome.wustl.edu	37	19	46094736	46094736	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	46094736	46094736	C	T	SNP	GPR4	ENST00000323040	human	ensembl	74_37	-1	known	missense	c.389	p.R130H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464	tier1	-	-	25	0	0.00	12	4	25.00
GPRIN3	0	genome.wustl.edu	37	4	90168959	90168959	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	90168959	90168959	C	T	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.2303	p.R768H	0.552	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	tier1	rs145667508	-	40	0	0.00	7	16	69.57
GRIA4	0	genome.wustl.edu	37	11	105483048	105483048	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	105483048	105483048	G	T	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	missense	c.134	p.R45L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				79	0	0.00	50	3	5.66
GZF1	0	genome.wustl.edu	37	20	23345474	23345474	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	20	23345474	23345474	A	T	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.454	p.S152C	0.001	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812	tier1	-	-	26	0	0.00	11	8	42.11
HELZ2	0	genome.wustl.edu	37	20	62202818	62202818	+	RNA	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	20	62202818	62202818	T	C	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	-	-	61	0	0.00	43	6	12.24
HERC2P4	0	genome.wustl.edu	37	16	32198420	32198420	+	RNA	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	32198420	32198420	C	T	SNP	HERC2P4	ENST00000568097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.904	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	tier1	-	-	77	0	0.00	62	44	41.51
HSPA1B	0	genome.wustl.edu	37	6	31795842	31795842	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	31795842	31795842	C	T	SNP	HSPA1B	ENST00000375650	human	ensembl	74_37	+1	known	missense	c.115	p.P39S	1.000	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1B	HGNC	ENSG00000204388	tier1	-	-	34	0	0.00	9	15	62.50
HTATSF1	0	genome.wustl.edu	37	X	135594151	135594151	+	Silent	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	X	135594151	135594151	T	C	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	silent	c.2247	p.D749	0.686	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				64	0	0.00	56	4	6.67
IFI44L	0	genome.wustl.edu	37	1	79107493	79107493	+	Nonstop_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	79107493	79107493	G	T	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	nonstop	c.1358	p.*453L	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959	tier1	-	-	75	0	0.00	29	15	34.09
ITPR1	0	genome.wustl.edu	37	3	4888305	4888305	+	RNA	DEL	C	C	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	4888305	4888305	C	-	DEL	ITPR1	ENST00000463980	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ITPR1	HGNC	ENSG00000150995	tier1			47	0	0.00	9	22	70.97
KIF15	0	genome.wustl.edu	37	3	44882647	44882647	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	44882647	44882647	G	C	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.3502	p.A1168P	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	tier1	-	-	30	0	0.00	11	16	59.26
KIF21A	0	genome.wustl.edu	37	12	39735383	39735383	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	39735383	39735383	C	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	silent	c.1845	p.E615	0.969	superfamily_ARM-type_fold	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				36	0	0.00	50	3	5.66
KMT2B	0	genome.wustl.edu	37	19	36221688	36221688	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	36221688	36221688	G	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.5357	p.W1786L	0.864	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				50	0	0.00	30	2	6.25
KRT8	0	genome.wustl.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	53298675	53298675	A	C	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.91	p.S31A	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				63	0	0.00	43	3	6.52
KRT8	0	genome.wustl.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	53298699	53298699	G	A	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.67	p.R23C	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				66	0	0.00	29	4	12.12
KTN1	0	genome.wustl.edu	37	14	56142634	56142634	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	56142634	56142634	A	G	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.3853	p.K1285E	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777	tier1	-	-	37	0	0.00	34	14	29.17
L3MBTL4	0	genome.wustl.edu	37	18	6311610	6311610	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	6311610	6311610	G	A	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	silent	c.15	p.N5	0.952	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	tier1	-	-	59	0	0.00	42	19	31.15
LGALS8	0	genome.wustl.edu	37	1	236704981	236704981	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	236704981	236704981	C	T	SNP	LGALS8	ENST00000352231	human	ensembl	74_37	+1	known	silent	c.493	p.L165	0.001	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS8	HGNC	ENSG00000116977	tier1	-	-	56	0	0.00	32	21	39.62
LINC00943	0	genome.wustl.edu	37	12	127229404	127229404	+	RNA	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	127229404	127229404	T	C	SNP	LINC00943	ENST00000345111	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00943	HGNC	ENSG00000189238	tier1	-	-	109	0	0.00	98	26	20.97
LINC00957	0	genome.wustl.edu	37	7	44080441	44080441	+	RNA	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	44080441	44080441	C	G	SNP	LINC00957	ENST00000416824	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LINC00957	HGNC	ENSG00000235314	tier1	-	-	28	0	0.00	37	48	56.47
LOC101928673	0	genome.wustl.edu	37	1	173430053	173430053	+	RNA	DEL	C	C	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	173430053	173430053	C	-	DEL	LOC101928673	ENST00000367716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	RP11-296O14.3	Clone_based_vega_gene	ENSG00000203739	tier1			31	0	0.00	27	4	12.90
LOC101930284	0	genome.wustl.edu	37	1	143230361	143230361	+	RNA	SNP	T	T	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	143230361	143230361	T	A	SNP	LOC101930284	ENST00000422716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	RP11-782C8.5	Clone_based_vega_gene	ENSG00000225278	tier1	rs199651539	-	73	0	0.00	64	9	12.33
LRP6	0	genome.wustl.edu	37	12	12312804	12312804	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	12312804	12312804	G	A	SNP	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	missense	c.2374	p.R792W	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	tier1	-	-	61	0	0.00	79	12	13.19
LRRC57	0	genome.wustl.edu	37	15	42837391	42837391	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	15	42837391	42837391	G	C	SNP	LRRC57	ENST00000323443	human	ensembl	74_37	-1	known	missense	c.562	p.L188V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC57	HGNC	ENSG00000180979	tier1	-	-	40	0	0.00	28	12	30.00
LRTM1	0	genome.wustl.edu	37	3	54959124	54959124	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	54959124	54959124	G	T	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	silent	c.126	p.A42	0.906	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	tier1	-	-	38	0	0.00	23	3	11.54
LYG1	0	genome.wustl.edu	37	2	99901179	99901179	+	Silent	SNP	T	T	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	99901179	99901179	T	G	SNP	LYG1	ENST00000308528	human	ensembl	74_37	-1	known	silent	c.438	p.P146	1.000	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG1	HGNC	ENSG00000144214	tier1	-	-	32	0	0.00	32	17	34.69
LYPLA1	0	genome.wustl.edu	37	8	54960378	54960378	+	RNA	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	54960378	54960378	G	C	SNP	LYPLA1	ENST00000519272	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LYPLA1	HGNC	ENSG00000120992	tier1	-	-	14	0	0.00	13	6	31.58
MACF1	0	genome.wustl.edu	37	1	39905125	39905125	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	39905125	39905125	C	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.12223	p.P4075T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1	-	-	45	0	0.00	32	4	11.11
MAML3	0	genome.wustl.edu	37	4	140811081	140811081	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	140811081	140811081	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	silent	c.1509	p.Q503	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				41	0	0.00	37	3	7.50
MAP3K1	0	genome.wustl.edu	37	5	56174810	56174810	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	56174810	56174810	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.1969	p.T657A	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	tier1	-	-	46	0	0.00	33	9	21.43
MAU2	0	genome.wustl.edu	37	19	19460171	19460171	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	19460171	19460171	G	A	SNP	MAU2	ENST00000262815	human	ensembl	74_37	+1	known	missense	c.1474	p.E492K	0.998	pfam_Cohesin_loading_factor,smart_TPR_repeat	pfam_Cohesin_loading_factor,smart_TPR_repeat	-	no_errors	MAU2	HGNC	ENSG00000129933	tier1	-	-	89	0	0.00	53	26	32.91
MEG3	0	genome.wustl.edu	37	14	101301083	101301083	+	RNA	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	101301083	101301083	C	T	SNP	MEG3	ENST00000398461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	tier1	rs112191889	-	31	0	0.00	45	18	28.57
MFSD5	0	genome.wustl.edu	37	12	53646926	53646926	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	53646926	53646926	G	T	SNP	MFSD5	ENST00000534842	human	ensembl	74_37	+1	known	missense	c.628	p.G210C	1.000	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD5	HGNC	ENSG00000182544	tier1	-	-	55	0	0.00	72	4	5.26
MIOS	0	genome.wustl.edu	37	7	7634722	7634722	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	7634722	7634722	C	T	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	missense	c.2155	p.H719Y	1.000	NULL	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654	tier1	-	-	67	0	0.00	78	13	14.29
MIR1277	0	genome.wustl.edu	37	X	117520366	117520367	+	RNA	DEL	AT	AT	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	X	117520366	117520367	AT	-	DEL	MIR1277	ENST00000408536	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986:0.997	-	-	-	no_errors	MIR1277	HGNC	ENSG00000221463	tier1			52	0	0.00	38	6	13.64
MIR30E	0	genome.wustl.edu	37	1	41220064	41220064	+	RNA	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	41220064	41220064	G	T	SNP	MIR30E	ENST00000362104	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR30E	HGNC	ENSG00000198974	tier1	-	-	55	0	0.00	24	25	51.02
MIR411	0	genome.wustl.edu	37	14	101489664	101489664	+	RNA	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	101489664	101489664	G	T	SNP	MIR411	ENST00000362239	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR411	HGNC	ENSG00000199109	tier1	-	-	99	0	0.00	87	46	34.59
MLLT3	0	genome.wustl.edu	37	9	20622295	20622295	+	RNA	DEL	C	C	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	9	20622295	20622295	C	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843	tier1			72	0	0.00	69	7	9.21
MOG	0	genome.wustl.edu	37	6	29627252	29627252	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	29627252	29627252	A	G	SNP	MOG	ENST00000376898	human	ensembl	74_37	+1	known	missense	c.245	p.N82S	0.991	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MOG	HGNC	ENSG00000204655				68	0	0.00	44	3	6.25
MPO	0	genome.wustl.edu	37	17	56350190	56350190	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	56350190	56350190	G	T	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	silent	c.1807	p.R603	0.231	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	tier1	-	-	63	0	0.00	71	4	5.33
MROH2A	0	genome.wustl.edu	37	2	234741841	234741841	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	234741841	234741841	C	T	SNP	MROH2A	ENST00000389758	human	ensembl	74_37	+1	novel	missense	c.4961	p.T1654M	0.984	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2A	HGNC	ENSG00000185038	tier1	-	-	39	0	0.00	32	4	11.11
MTBP	0	genome.wustl.edu	37	8	121473471	121473471	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	121473471	121473471	A	G	SNP	MTBP	ENST00000305949	human	ensembl	74_37	+1	known	missense	c.953	p.Y318C	0.948	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167	tier1	-	-	57	0	0.00	47	15	24.19
MYNN	0	genome.wustl.edu	37	3	169496707	169496707	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	169496707	169496707	C	T	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	nonsense	c.418	p.Q140*	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	tier1	-	-	49	0	0.00	62	7	10.14
MYO5B	0	genome.wustl.edu	37	18	47431143	47431143	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	47431143	47431143	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.2470	p.R824C	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	tier1	-	-	95	0	0.00	75	30	28.57
MYOCD	0	genome.wustl.edu	37	17	12649386	12649386	+	Silent	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	12649386	12649386	G	C	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	silent	c.1122	p.L374	0.998	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052	tier1	-	-	49	0	0.00	44	4	8.33
N4BP2	0	genome.wustl.edu	37	4	40103753	40103755	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	40103753	40103755	ATC	-	DEL	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	in_frame_del	c.288_290	p.S99in_frame_del	0.001:0.036:0.718	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	tier1			31	0	0.00	9	12	57.14
NBEAL1	0	genome.wustl.edu	37	2	203991643	203991643	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	203991643	203991643	A	G	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.3155	p.Y1052C	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	tier1	-	-	106	0	0.00	64	23	26.44
NLRP2	0	genome.wustl.edu	37	19	55494687	55494687	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	55494687	55494687	G	A	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.1621	p.G541R	0.003	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	tier1	-	-	38	0	0.00	24	6	20.00
NPHP1	0	genome.wustl.edu	37	2	110962506	110962506	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	110962506	110962506	G	A	SNP	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	missense	c.40	p.R14W	0.992	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061	tier1	-	-	36	0	0.00	64	4	5.88
NUP107	0	genome.wustl.edu	37	12	69127301	69127301	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	69127301	69127301	A	G	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.2171	p.Y724C	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	tier1	-	-	30	0	0.00	25	7	21.88
OR10G8	0	genome.wustl.edu	37	11	123900746	123900746	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	123900746	123900746	G	T	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.417	p.S139	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560	tier1	-	-	105	0	0.00	94	38	28.79
OR10S1	0	genome.wustl.edu	37	11	123847675	123847675	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	123847675	123847675	T	C	SNP	OR10S1	ENST00000531945	human	ensembl	74_37	-1	known	missense	c.724	p.I242V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	tier1	-	-	22	0	0.00	9	8	47.06
OR4K1	0	genome.wustl.edu	37	14	20404271	20404271	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	20404271	20404271	G	A	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	nonsense	c.446	p.W149*	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	tier1	-	-	77	0	0.00	137	13	8.61
OR8B12	0	genome.wustl.edu	37	11	124413294	124413294	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	124413294	124413294	G	C	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	nonsense	c.257	p.S86*	0.981	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953	tier1	-	-	28	0	0.00	10	16	61.54
PANX3	0	genome.wustl.edu	37	11	124489477	124489477	+	Silent	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	124489477	124489477	C	A	SNP	PANX3	ENST00000284288	human	ensembl	74_37	+1	known	silent	c.825	p.S275	0.164	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143	tier1	-	-	76	0	0.00	73	17	18.89
PCDH15	0	genome.wustl.edu	37	10	55892731	55892731	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	10	55892731	55892731	T	C	SNP	PCDH15	ENST00000373956	human	ensembl	74_37	-1	known	missense	c.128	p.H43R	0.978	NULL	NULL	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	60	0	0.00	34	21	37.50
PCDHGA6	0	genome.wustl.edu	37	5	140754632	140754632	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	140754632	140754632	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	nonsense	c.982	p.R328*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731	tier1	-	-	44	0	0.00	12	13	52.00
PCGF6	0	genome.wustl.edu	37	10	105110755	105110756	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	10	105110755	105110756	CA	-	DEL	PCGF6	ENST00000369847	human	ensembl	74_37	-1	known	frame_shift_del	c.69_68	p.L23fs	0.953:0.836	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	tier1			16	0	0.00	4	2	33.33
PCNX	0	genome.wustl.edu	37	14	71374637	71374637	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	71374637	71374637	G	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.70	p.D24Y	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	tier1	-	-	55	0	0.00	71	11	13.41
PHACTR1	0	genome.wustl.edu	37	6	13278443	13278443	+	RNA	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	13278443	13278443	C	T	SNP	PHACTR1	ENST00000481706	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHACTR1	HGNC	ENSG00000112137	tier1	-	-	37	0	0.00	29	4	12.12
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs121913279	-	22	0	0.00	21	8	27.59
PIK3R2	0	genome.wustl.edu	37	19	18273104	18273104	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	18273104	18273104	T	C	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.994	p.W332R	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				26	0	0.00	30	2	6.25
PLA2G4D	0	genome.wustl.edu	37	15	42363452	42363452	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	15	42363452	42363452	C	T	SNP	PLA2G4D	ENST00000290472	human	ensembl	74_37	-1	known	missense	c.1745	p.G582D	0.015	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	tier1	-	-	50	0	0.00	51	4	7.27
PLEKHA5	0	genome.wustl.edu	37	12	19518920	19518920	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	19518920	19518920	G	T	SNP	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	missense	c.3322	p.A1108S	0.117	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				23	0	0.00	35	2	5.41
PLEKHA7	0	genome.wustl.edu	37	11	16816072	16816072	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	11	16816072	16816072	G	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.2708	p.S903Y	0.809	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				50	0	0.00	40	3	6.98
POLR1A	0	genome.wustl.edu	37	2	86271425	86271425	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	86271425	86271425	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.2972	p.C991Y	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				31	0	0.00	48	3	5.88
PPIL2	0	genome.wustl.edu	37	22	22043027	22043027	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	22	22043027	22043027	A	T	SNP	PPIL2	ENST00000412327	human	ensembl	74_37	+1	known	missense	c.1028	p.E343V	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_Rtf2_RING-finger,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023	tier1	-	-	35	0	0.00	41	8	16.00
PRDM9	0	genome.wustl.edu	37	5	23522919	23522919	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	23522919	23522919	G	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.807	p.L269	0.364	pfscan_SET_dom	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	tier1	-	-	68	0	0.00	46	22	32.35
PRELP	0	genome.wustl.edu	37	1	203452624	203452624	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	203452624	203452624	C	T	SNP	PRELP	ENST00000343110	human	ensembl	74_37	+1	known	silent	c.312	p.I104	1.000	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783	tier1	-	-	67	0	0.00	41	21	33.87
PROS1	0	genome.wustl.edu	37	3	93593135	93593135	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	93593135	93593135	C	G	SNP	PROS1	ENST00000394236	human	ensembl	74_37	-1	known	missense	c.1985	p.R662T	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	tier1	-	-	94	0	0.00	46	23	33.33
PRR16	0	genome.wustl.edu	37	5	120021833	120021833	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	120021833	120021833	C	T	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	missense	c.344	p.T115M	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838	tier1	-	-	33	0	0.00	14	12	46.15
PSPH	0	genome.wustl.edu	37	7	56079282	56079283	+	RNA	INS	-	-	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	56079282	56079283	-	A	INS	PSPH	ENST00000459834	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	PSPH	HGNC	ENSG00000146733	tier1			22	0	0.00	20	4	16.67
PTPRG-AS1	0	genome.wustl.edu	37	3	62278318	62278318	+	RNA	SNP	T	T	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	62278318	62278318	T	A	SNP	PTPRG-AS1	ENST00000475371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	PTPRG-AS1	HGNC	ENSG00000241472	tier1	-	-	12	0	0.00	4	6	60.00
PTPRT	0	genome.wustl.edu	37	20	41419951	41419951	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	20	41419951	41419951	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.370	p.V124M	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1	-	-	51	0	0.00	12	35	74.47
PTPRU	0	genome.wustl.edu	37	1	29606613	29606613	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	29606613	29606613	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1828	p.V610M	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	46	0	0.00	27	15	35.71
RNF123	0	genome.wustl.edu	37	3	49739576	49739576	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	49739576	49739576	G	C	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.1556	p.G519A	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	tier1	-	-	53	0	0.00	7	9	56.25
SBNO2	0	genome.wustl.edu	37	19	1120003	1120003	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	1120003	1120003	T	G	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	missense	c.1169	p.H390P	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932	tier1	-	-	35	0	0.00	28	11	28.21
SH3BGRL2	0	genome.wustl.edu	37	6	80383498	80383498	+	Silent	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	80383498	80383498	T	C	SNP	SH3BGRL2	ENST00000369838	human	ensembl	74_37	+1	known	silent	c.213	p.N71	0.999	pfam_Glut_rich_SH3-bd,pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL2	HGNC	ENSG00000198478	tier1	-	-	14	0	0.00	2	8	80.00
SI	0	genome.wustl.edu	37	3	164727159	164727159	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	3	164727159	164727159	G	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4087	p.P1363T	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	tier1	-	-	51	0	0.00	49	12	19.67
SLC12A1	0	genome.wustl.edu	37	15	48500102	48500102	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	15	48500102	48500102	T	G	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.186	p.F62L	1.000	prints_Na/K/Cl_cotranspt2	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803	tier1	-	-	24	0	0.00	11	23	67.65
SLC23A2	0	genome.wustl.edu	37	20	4848460	4848460	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	20	4848460	4848460	A	G	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	missense	c.1312	p.S438P	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				22	0	0.00	31	4	11.43
SLC36A2	0	genome.wustl.edu	37	5	150704916	150704916	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	5	150704916	150704916	G	A	SNP	SLC36A2	ENST00000335244	human	ensembl	74_37	-1	known	missense	c.941	p.A314V	0.945	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335	tier1	-	-	57	0	0.00	29	18	38.30
SLC47A2	0	genome.wustl.edu	37	17	19611088	19611088	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	19611088	19611088	A	T	SNP	SLC47A2	ENST00000325411	human	ensembl	74_37	-1	known	missense	c.806	p.L269Q	0.001	tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638	tier1	-	-	28	0	0.00	14	15	51.72
SLC9B1	0	genome.wustl.edu	37	4	103867843	103867843	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	103867843	103867843	G	T	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	silent	c.486	p.T162	0.954	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037	tier1	-	-	92	0	0.00	76	4	5.00
SMPDL3A	0	genome.wustl.edu	37	6	123110453	123110453	+	RNA	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	6	123110453	123110453	G	A	SNP	SMPDL3A	ENST00000487215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMPDL3A	HGNC	ENSG00000172594	tier1	-	-	10	0	0.00	1	5	83.33
SPATA17	0	genome.wustl.edu	37	1	217947781	217947781	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	217947781	217947781	A	G	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	missense	c.625	p.K209E	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814	tier1	-	-	44	0	0.00	32	15	31.91
SPHKAP	0	genome.wustl.edu	37	2	228884710	228884710	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	228884710	228884710	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.860	p.P287Q	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1	-	-	81	0	0.00	58	4	6.45
SSBP1	0	genome.wustl.edu	37	7	141443477	141443477	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	7	141443477	141443477	G	A	SNP	SSBP1	ENST00000265304	human	ensembl	74_37	+1	known	missense	c.202	p.G68R	1.000	pfam_Primosome_PriB/ssb,superfamily_NA-bd_OB-fold,pfscan_Primosome_PriB/ssb,tigrfam_ssDNA-bd	pfam_Primosome_PriB/ssb,superfamily_NA-bd_OB-fold,pfscan_Primosome_PriB/ssb,tigrfam_ssDNA-bd	-	no_errors	SSBP1	HGNC	ENSG00000106028	tier1	-	-	54	0	0.00	40	4	9.09
SULT1A2	0	genome.wustl.edu	37	16	28603714	28603714	+	Silent	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	16	28603714	28603714	C	T	SNP	SULT1A2	ENST00000335715	human	ensembl	74_37	-1	known	silent	c.645	p.L215	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				126	0	0.00	94	8	7.84
TCHH	0	genome.wustl.edu	37	1	152082500	152082500	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	152082500	152082500	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3193	p.G1065R	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	106	0	0.00	72	36	33.33
TDH	0	genome.wustl.edu	37	8	11219212	11219212	+	RNA	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	11219212	11219212	G	A	SNP	TDH	ENST00000525246	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TDH	HGNC	ENSG00000154316	tier1	-	-	56	0	0.00	18	33	64.71
TLL1	0	genome.wustl.edu	37	4	166910623	166910623	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	166910623	166910623	G	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.260	p.G87V	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				58	0	0.00	20	2	9.09
TOP3B	0	genome.wustl.edu	37	22	22316801	22316801	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	22	22316801	22316801	C	T	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.1525	p.G509S	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd,prints_Topo_IA	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	tier1	-	-	71	0	0.00	60	6	9.09
TP53	0	genome.wustl.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	7577498	7577498	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.782+1	e6+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	250	0	0.00	82	225	73.29
TPO	0	genome.wustl.edu	37	2	1426896	1426896	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	1426896	1426896	G	A	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.174	p.M58I	0.046	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				33	0	0.00	40	3	6.98
TPP2	0	genome.wustl.edu	37	13	103330576	103330576	+	Splice_Site	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	13	103330576	103330576	G	A	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	splice_site	c.3661-1	e29-1	1.000	-	-	-	no_errors	TPP2	HGNC	ENSG00000134900				30	0	0.00	31	4	11.43
TSPAN8	0	genome.wustl.edu	37	12	71526592	71526592	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	71526592	71526592	C	T	SNP	TSPAN8	ENST00000247829	human	ensembl	74_37	-1	known	missense	c.457	p.G153S	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN8	HGNC	ENSG00000127324	tier1	-	-	41	0	0.00	51	9	15.00
TTLL7	0	genome.wustl.edu	37	1	84399407	84399407	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	1	84399407	84399407	G	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.931	p.L311M	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941	tier1	-	-	56	0	0.00	25	4	13.79
TTN	0	genome.wustl.edu	37	2	179640736	179640736	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	179640736	179640736	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5855	p.H1952R	0.563	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	48	0	0.00	33	13	28.26
TTTY5	0	genome.wustl.edu	37	Y	24443783	24443783	+	RNA	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	Y	24443783	24443783	G	C	SNP	TTTY5	ENST00000400581	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	TTTY5	HGNC	ENSG00000215560	tier1	-	-	30	0	0.00	46	33	41.77
TUBGCP5	0	genome.wustl.edu	37	15	22842144	22842144	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	15	22842144	22842144	G	T	SNP	TUBGCP5	ENST00000283645	human	ensembl	74_37	+1	known	missense	c.583	p.D195Y	0.980	NULL	pfam_TUBGCP	-	no_errors	TUBGCP5	HGNC	ENSG00000153575				24	0	0.00	27	2	6.67
USP9X	0	genome.wustl.edu	37	X	41057781	41057781	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	X	41057781	41057781	G	T	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	nonsense	c.4381	p.E1461*	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486	tier1	-	-	66	0	0.00	41	4	8.89
VAMP8	0	genome.wustl.edu	37	2	85808700	85808700	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	2	85808700	85808700	C	T	SNP	VAMP8	ENST00000263864	human	ensembl	74_37	+1	known	missense	c.164	p.S55F	0.993	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin,pfscan_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	VAMP8	HGNC	ENSG00000118640	tier1	-	-	63	0	0.00	70	30	30.00
VEGFC	0	genome.wustl.edu	37	4	177650746	177650746	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	4	177650746	177650746	G	C	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	nonsense	c.302	p.S101*	0.089	NULL	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630	tier1	-	-	86	0	0.00	47	35	42.68
VIPAS39	0	genome.wustl.edu	37	14	77895359	77895359	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	77895359	77895359	A	G	SNP	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	missense	c.1346	p.V449A	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445				54	0	0.00	74	4	5.13
VPS13B	0	genome.wustl.edu	37	8	100871642	100871642	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	100871642	100871642	G	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.11053	p.G3685C	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				37	0	0.00	39	3	7.14
WHSC1L1	0	genome.wustl.edu	37	8	38175279	38175280	+	RNA	INS	-	-	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	8	38175279	38175280	-	A	INS	WHSC1L1	ENST00000525081	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.635:0.998	-	-	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	tier1			18	0	0.00	23	3	11.54
YBX2	0	genome.wustl.edu	37	17	7193602	7193602	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	17	7193602	7193602	G	A	SNP	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	missense	c.712	p.P238S	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047	tier1	-	-	96	0	0.00	71	24	25.26
ZADH2	0	genome.wustl.edu	37	18	72914034	72914034	+	Silent	SNP	G	G	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	72914034	72914034	G	A	SNP	ZADH2	ENST00000322342	human	ensembl	74_37	-1	known	silent	c.471	p.G157	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011	tier1	-	-	16	0	0.00	13	6	31.58
ZADH2	0	genome.wustl.edu	37	18	72914035	72914035	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	18	72914035	72914035	C	A	SNP	ZADH2	ENST00000322342	human	ensembl	74_37	-1	known	missense	c.470	p.G157V	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011	tier1	-	-	16	0	0.00	13	6	31.58
ZFHX2	0	genome.wustl.edu	37	14	23999349	23999349	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	14	23999349	23999349	T	C	SNP	ZFHX2	ENST00000419474	human	ensembl	74_37	-1	known	missense	c.2855	p.Q952R	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX2	HGNC	ENSG00000136367	tier1	-	-	31	0	0.00	51	5	8.93
ZNF10	0	genome.wustl.edu	37	12	133727694	133727694	+	Silent	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	12	133727694	133727694	G	T	SNP	ZNF10	ENST00000248211	human	ensembl	74_37	+1	known	silent	c.114	p.V38	0.998	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223				56	0	0.00	53	3	5.36
ZNF536	0	genome.wustl.edu	37	19	31039123	31039123	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	31039123	31039123	C	G	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.2597	p.S866C	0.947	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	tier1	-	-	34	0	0.00	25	8	24.24
ZNF540	0	genome.wustl.edu	37	19	38102492	38102492	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	38102492	38102492	T	C	SNP	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	missense	c.311	p.I104T	0.088	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	tier1	-	-	27	0	0.00	20	6	23.08
ZNF547	0	genome.wustl.edu	37	19	57889016	57889016	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A4-01A-11D-A27G-09	TCGA-LN-A4A4-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4d617f90-3296-4b9a-b5c0-e717cebd3f25	50939d6d-df1d-4f3e-8857-c4d11e46ba5e	19	57889016	57889016	G	T	SNP	ZNF547	ENST00000282282	human	ensembl	74_37	+1	known	missense	c.672	p.K224N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433				63	0	0.00	39	4	9.30
