Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACACA	0	genome.wustl.edu	37	17	35518738	35518738	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	35518738	35518738	T	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.5306	p.H1769R	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	tier1	-	-	40	0	0.00	44	4	8.16
ADAT1	0	genome.wustl.edu	37	16	75637047	75637047	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	75637047	75637047	G	T	SNP	ADAT1	ENST00000307921	human	ensembl	74_37	-1	known	missense	c.1312	p.L438I	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457	tier1	-	-	44	0	0.00	32	4	11.11
ADH6	0	genome.wustl.edu	37	4	100137153	100137153	+	RNA	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	100137153	100137153	G	T	SNP	ADH6	ENST00000513262	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	ADH6	HGNC	ENSG00000172955	tier1	-	-	27	0	0.00	22	6	21.43
AGO4	0	genome.wustl.edu	37	1	36290920	36290920	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	36290920	36290920	A	G	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.313	p.M105V	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698	tier1	-	-	47	0	0.00	41	8	16.33
AKAP9	0	genome.wustl.edu	37	7	91624022	91624022	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	7	91624022	91624022	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.700	p.D234N	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				22	0	0.00	26	2	7.14
AKT3	0	genome.wustl.edu	37	1	243675719	243675719	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	243675719	243675719	G	T	SNP	AKT3	ENST00000263826	human	ensembl	74_37	-1	known	missense	c.1261	p.P421T	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT3	HGNC	ENSG00000117020				32	0	0.00	49	5	9.26
ANKS1B	0	genome.wustl.edu	37	12	99548119	99548119	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	99548119	99548119	G	T	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.2474	p.P825H	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				38	0	0.00	36	4	10.00
AP3B1	0	genome.wustl.edu	37	5	77477446	77477446	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	77477446	77477446	G	T	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.827	p.S276Y	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				35	0	0.00	42	3	6.67
APOA1	0	genome.wustl.edu	37	11	116706854	116706854	+	Silent	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	116706854	116706854	C	T	SNP	APOA1	ENST00000236850	human	ensembl	74_37	-1	known	silent	c.474	p.L158	0.989	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137				30	0	0.00	30	3	9.09
ASB5	0	genome.wustl.edu	37	4	177158564	177158564	+	RNA	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	177158564	177158564	G	A	SNP	ASB5	ENST00000511879	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.863	-	-	-	no_errors	ASB5	HGNC	ENSG00000164122	tier1	-	-	64	0	0.00	67	18	21.18
ASPM	0	genome.wustl.edu	37	1	197070956	197070956	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	197070956	197070956	C	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.7425	p.K2475N	0.021	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	tier1	-	-	86	0	0.00	106	16	13.11
ASTL	0	genome.wustl.edu	37	2	96789707	96789707	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	96789707	96789707	G	A	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	missense	c.1178	p.T393I	0.000	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886	tier1	-	-	41	0	0.00	35	6	14.63
ASXL3	0	genome.wustl.edu	37	18	31323088	31323088	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	31323088	31323088	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.3276	p.E1092	0.934	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	tier1	-	-	31	0	0.00	26	6	18.75
ATAD3A	0	genome.wustl.edu	37	1	1458215	1458215	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	1458215	1458215	A	T	SNP	ATAD3A	ENST00000378755	human	ensembl	74_37	+1	known	missense	c.986	p.K329M	1.000	pfam_DUF3523	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3A	HGNC	ENSG00000197785	tier1	-	-	97	0	0.00	102	19	15.70
ATP13A1	0	genome.wustl.edu	37	19	19758016	19758016	+	Silent	SNP	T	T	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	19	19758016	19758016	T	A	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	silent	c.3027	p.G1009	0.010	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726	tier1	-	-	39	0	0.00	25	5	16.67
ATP2B4	0	genome.wustl.edu	37	1	203672839	203672839	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	203672839	203672839	G	T	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.997	p.D333Y	0.985	pfam_ATPase_P-typ_transduc_dom_A	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	-	-	34	0	0.00	18	3	14.29
ATXN7	0	genome.wustl.edu	37	3	63898558	63898558	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	63898558	63898558	G	T	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	missense	c.284	p.W95L	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635	tier1	-	-	76	0	0.00	67	4	5.63
BACH2	0	genome.wustl.edu	37	6	90642291	90642291	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	90642291	90642291	C	T	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.2362	p.E788K	1.000	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				33	0	0.00	17	2	10.53
BNIP2	0	genome.wustl.edu	37	15	59970196	59970196	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	15	59970196	59970196	C	T	SNP	BNIP2	ENST00000267859	human	ensembl	74_37	-1	known	missense	c.749	p.R250H	1.000	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	BNIP2	HGNC	ENSG00000140299	tier1	rs144319954	-	34	0	0.00	39	8	17.02
BRINP2	0	genome.wustl.edu	37	1	177250911	177250911	+	RNA	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	177250911	177250911	C	A	SNP	BRINP2	ENST00000478325	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	38	0	0.00	51	10	16.39
C12orf66	0	genome.wustl.edu	37	12	64609541	64609541	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	64609541	64609541	C	A	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	missense	c.438	p.M146I	1.000	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206	tier1	-	-	61	0	0.00	68	13	16.05
C17orf62	0	genome.wustl.edu	37	17	80407052	80407052	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	80407052	80407052	G	T	SNP	C17orf62	ENST00000306645	human	ensembl	74_37	-1	known	missense	c.79	p.L27M	0.994	NULL	NULL	-	no_errors	C17orf62	HGNC	ENSG00000178927	tier1	-	-	50	0	0.00	59	4	6.35
C4orf21	0	genome.wustl.edu	37	4	113506828	113506828	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	113506828	113506828	A	G	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.3970	p.S1324P	0.973	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658	tier1	-	-	42	0	0.00	35	7	16.67
C9orf43	0	genome.wustl.edu	37	9	116186500	116186500	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	9	116186500	116186500	G	T	SNP	C9orf43	ENST00000288462	human	ensembl	74_37	+1	known	missense	c.711	p.L237F	0.867	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	tier1	-	-	21	0	0.00	40	7	14.89
CAPN6	0	genome.wustl.edu	37	X	110495711	110495711	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	X	110495711	110495711	C	A	SNP	CAPN6	ENST00000324068	human	ensembl	74_37	-1	known	nonsense	c.523	p.E175*	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274	tier1	-	-	19	0	0.00	33	8	19.51
CCDC62	0	genome.wustl.edu	37	12	123282748	123282748	+	Splice_Site	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	123282748	123282748	G	T	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	splice_site	c.977+1	e8+1	1.000	-	-	-	no_errors	CCDC62	HGNC	ENSG00000130783				34	0	0.00	37	2	5.13
CDH22	0	genome.wustl.edu	37	20	44856175	44856175	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	20	44856175	44856175	C	A	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	missense	c.642	p.E214D	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	tier1	-	-	42	0	0.00	41	12	22.64
CENPT	0	genome.wustl.edu	37	16	67865492	67865492	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	67865492	67865492	A	G	SNP	CENPT	ENST00000219172	human	ensembl	74_37	-1	known	missense	c.547	p.S183P	0.098	NULL	superfamily_Histone-fold	-	no_errors	CENPT	HGNC	ENSG00000102901				16	0	0.00	39	4	9.30
CERS5	0	genome.wustl.edu	37	12	50531578	50531578	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	50531578	50531578	T	C	SNP	CERS5	ENST00000317551	human	ensembl	74_37	-1	known	missense	c.569	p.Y190C	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS5	HGNC	ENSG00000139624	tier1	-	-	35	0	0.00	30	9	23.08
CERS6	0	genome.wustl.edu	37	2	169626102	169626102	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	169626102	169626102	C	T	SNP	CERS6	ENST00000392687	human	ensembl	74_37	+1	known	missense	c.1109	p.A370V	0.233	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS6	HGNC	ENSG00000172292				38	0	0.00	58	4	6.45
CFDP1	0	genome.wustl.edu	37	16	75327732	75327732	+	RNA	DEL	A	A	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	75327732	75327732	A	-	DEL	CFDP1	ENST00000570103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	CFDP1	HGNC	ENSG00000153774	tier1			16	0	0.00	17	3	15.00
CIR1	0	genome.wustl.edu	37	2	175213649	175213649	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	175213649	175213649	T	C	SNP	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	missense	c.929	p.K310R	0.093	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433	tier1	-	-	32	0	0.00	32	4	11.11
COL15A1	0	genome.wustl.edu	37	9	101811974	101811974	+	Silent	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	9	101811974	101811974	C	T	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	silent	c.2796	p.G932	0.945	superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	tier1	-	-	57	0	0.00	38	23	37.70
COL2A1	0	genome.wustl.edu	37	12	48391685	48391685	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	48391685	48391685	G	A	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.398	p.P133L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	tier1	-	-	20	0	0.00	21	8	27.59
COL6A6	0	genome.wustl.edu	37	3	130325811	130325811	+	Splice_Site	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	130325811	130325811	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	splice_site	c.4689+1	e20+1	1.000	-	-	-	no_errors	COL6A6	HGNC	ENSG00000206384	tier1	-	-	41	0	0.00	46	4	8.00
COL8A1	0	genome.wustl.edu	37	3	99514062	99514062	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	99514062	99514062	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	missense	c.1317	p.K439N	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	tier1	-	-	46	0	0.00	55	11	16.67
CTNNA2	0	genome.wustl.edu	37	2	80085292	80085292	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	80085292	80085292	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.554	p.S185F	0.969	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	tier1	-	-	36	0	0.00	43	9	17.31
CYFIP2	0	genome.wustl.edu	37	5	156747664	156747664	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	156747664	156747664	G	T	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.1525	p.V509F	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				49	0	0.00	44	3	6.38
DCC	0	genome.wustl.edu	37	18	50278474	50278474	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	50278474	50278474	G	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.142	p.D48Y	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				34	0	0.00	41	3	6.82
DLK2	0	genome.wustl.edu	37	6	43418528	43418529	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	43418528	43418529	-	AA	INS	DLK2	ENST00000357338	human	ensembl	74_37	-1	known	frame_shift_ins	c.901_900	p.G300fs	0.909:0.004	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK2	HGNC	ENSG00000171462	tier1			11	0	0.00	16	3	15.79
DPP7	0	genome.wustl.edu	37	9	140007735	140007735	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	9	140007735	140007735	A	T	SNP	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	missense	c.626	p.F209Y	0.978	pfam_Peptidase_S28,pfam_AB_hydrolase_1	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978	tier1	-	-	74	0	0.00	108	14	11.48
DSG1	0	genome.wustl.edu	37	18	28911754	28911754	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	28911754	28911754	C	A	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	missense	c.608	p.P203H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				30	0	0.00	37	2	5.13
ERMAP	0	genome.wustl.edu	37	1	43308661	43308661	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	43308661	43308661	G	T	SNP	ERMAP	ENST00000372514	human	ensembl	74_37	+1	known	nonsense	c.1186	p.E396*	0.999	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010				42	0	0.00	53	4	7.02
ESR2	0	genome.wustl.edu	37	14	64746800	64746800	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	64746800	64746800	T	C	SNP	ESR2	ENST00000341099	human	ensembl	74_37	-1	known	missense	c.434	p.D145G	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	tier1	-	-	52	0	0.00	62	9	12.68
EWSR1	0	genome.wustl.edu	37	22	29686476	29686476	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	22	29686476	29686476	A	T	SNP	EWSR1	ENST00000333395	human	ensembl	74_37	+1	putative	missense	c.1049	p.N350I	1.000	NULL	NULL	-	no_errors	EWSR1	HGNC	ENSG00000182944				17	0	0.00	22	3	12.00
FAM230A	0	genome.wustl.edu	37	22	20709091	20709091	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	22	20709091	20709091	G	A	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	missense	c.823	p.A275T	0.830	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	65	0	0.00	95	10	9.43
FEZF2	0	genome.wustl.edu	37	3	62355953	62355953	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	62355953	62355953	G	C	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.1185	p.N395K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	tier1	-	-	159	0	0.00	132	25	15.82
FLAD1	0	genome.wustl.edu	37	1	154960867	154960867	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	154960867	154960867	T	G	SNP	FLAD1	ENST00000405236	human	ensembl	74_37	+1	known	missense	c.362	p.L121R	1.000	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	-	no_errors	FLAD1	HGNC	ENSG00000160688	tier1	-	-	45	0	0.00	46	9	16.36
FOXL1	0	genome.wustl.edu	37	16	86613176	86613176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	86613176	86613176	G	-	DEL	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	frame_shift_del	c.847	p.G284fs	0.361	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678	tier1			41	0	0.00	30	2	6.25
FUT5	0	genome.wustl.edu	37	19	5867038	5867038	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	19	5867038	5867038	G	A	SNP	FUT5	ENST00000252675	human	ensembl	74_37	-1	known	silent	c.699	p.D233	0.554	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383	tier1	-	-	62	0	0.00	61	15	19.74
GOLGA2P5	0	genome.wustl.edu	37	12	100562921	100562921	+	RNA	DEL	T	T	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	100562921	100562921	T	-	DEL	GOLGA2P5	ENST00000421840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105	tier1			16	0	0.00	20	3	13.04
GPR83	0	genome.wustl.edu	37	11	94126685	94126686	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	94126685	94126686	-	A	INS	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	frame_shift_ins	c.613_612	p.A204fs	1.000:0.938	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	tier1			64	0	0.00	66	17	20.48
GPR98	0	genome.wustl.edu	37	5	90041550	90041550	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	90041550	90041550	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.10912	p.D3638Y	0.687	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	38	0	0.00	21	3	12.50
GSDMA	0	genome.wustl.edu	37	17	38122104	38122104	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	38122104	38122104	G	T	SNP	GSDMA	ENST00000301659	human	ensembl	74_37	+1	known	missense	c.164	p.R55L	0.242	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914	tier1	-	-	37	0	0.00	38	9	19.15
HERC2P9	0	genome.wustl.edu	37	15	28929558	28929558	+	RNA	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	15	28929558	28929558	A	G	SNP	HERC2P9	ENST00000528584	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.325	-	-	-	no_errors	HERC2P9	HGNC	ENSG00000206149	tier1	-	-	48	0	0.00	54	13	19.40
HIST1H2AK	0	genome.wustl.edu	37	6	27805782	27805783	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	27805782	27805783	-	A	INS	HIST1H2AK	ENST00000330180	human	ensembl	74_37	-1	known	frame_shift_ins	c.336_335	p.Q113fs	1.000:1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	tier1			158	0	0.00	163	23	12.37
HSPA12A	0	genome.wustl.edu	37	10	118443327	118443327	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	10	118443327	118443327	G	T	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.810	p.D270E	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				49	0	0.00	42	3	6.67
HUWE1	0	genome.wustl.edu	37	X	53573489	53573489	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	X	53573489	53573489	A	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10823	p.L3608R	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	14	0	0.00	14	5	26.32
ITGA7	0	genome.wustl.edu	37	12	56092633	56092633	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	56092633	56092633	G	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.991	p.R331S	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	tier1	-	-	34	0	0.00	36	9	20.00
KIAA0922	0	genome.wustl.edu	37	4	154471245	154471245	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	154471245	154471245	G	C	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.260	p.S87T	0.999	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	tier1	-	-	31	0	0.00	25	11	30.56
LEMD3	0	genome.wustl.edu	37	12	65564146	65564146	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	12	65564146	65564146	A	T	SNP	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	missense	c.770	p.N257I	0.985	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				14	0	0.00	25	5	16.67
LINC00304	0	genome.wustl.edu	37	16	89226823	89226823	+	RNA	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	89226823	89226823	A	G	SNP	LINC00304	ENST00000321214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.389	-	-	-	no_errors	LINC00304	HGNC	ENSG00000180422	tier1	-	-	25	0	0.00	26	6	18.75
LMAN1	0	genome.wustl.edu	37	18	57016376	57016376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	57016376	57016376	A	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.F244fs	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695	tier1			22	0	0.00	21	2	8.70
LOC730811	0	genome.wustl.edu	37	2	2328454	2328454	+	RNA	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	2328454	2328454	C	A	SNP	LOC730811	ENST00000422175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC009232.2	Clone_based_vega_gene	ENSG00000225619	tier1	-	-	35	0	0.00	40	7	14.89
LRPPRC	0	genome.wustl.edu	37	2	44187730	44187730	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	44187730	44187730	C	A	SNP	LRPPRC	ENST00000260665	human	ensembl	74_37	-1	known	missense	c.1532	p.G511V	0.885	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	tier1	-	-	55	0	0.00	59	13	18.06
LTK	0	genome.wustl.edu	37	15	41797421	41797421	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	15	41797421	41797421	T	-	DEL	LTK	ENST00000263800	human	ensembl	74_37	-1	known	frame_shift_del	c.1910	p.N637fs	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524	tier1			40	0	0.00	18	2	10.00
LZTR1	0	genome.wustl.edu	37	22	21348236	21348236	+	Silent	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	22	21348236	21348236	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	silent	c.1377	p.H459	0.953	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	tier1	-	-	49	0	0.00	42	11	20.75
MAB21L2	0	genome.wustl.edu	37	4	151504688	151504688	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	151504688	151504688	A	T	SNP	MAB21L2	ENST00000317605	human	ensembl	74_37	+1	known	missense	c.507	p.Q169H	0.981	pfam_Mab-21_dom	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541				19	0	0.00	37	4	9.76
MAP4K5	0	genome.wustl.edu	37	14	50914184	50914184	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	50914184	50914184	G	T	SNP	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	missense	c.1090	p.P364T	1.000	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983	tier1	-	-	71	0	0.00	62	4	6.06
MBP	0	genome.wustl.edu	37	18	74696752	74696752	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	74696752	74696752	C	T	SNP	MBP	ENST00000528160	human	ensembl	74_37	-1	novel	missense	c.101	p.R34H	1.000	NULL	NULL	-	no_errors	MBP	HGNC	ENSG00000197971	tier1	-	-	61	0	0.00	57	10	14.93
MBTPS2	0	genome.wustl.edu	37	X	21861336	21861336	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	X	21861336	21861336	G	A	SNP	MBTPS2	ENST00000379484	human	ensembl	74_37	+1	known	missense	c.124	p.G42R	0.996	NULL	pfam_Peptidase_M50,superfamily_PDZ,prints_MBTPS2	-	no_errors	MBTPS2	HGNC	ENSG00000012174	tier1	-	-	42	0	0.00	48	10	17.24
MCC	0	genome.wustl.edu	37	5	112389443	112389444	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	112389443	112389444	-	A	INS	MCC	ENST00000302475	human	ensembl	74_37	-1	known	frame_shift_ins	c.1857_1856	p.M619fs	1.000:1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1			37	0	0.00	33	11	25.00
MCF2L	0	genome.wustl.edu	37	13	113724463	113724463	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	13	113724463	113724463	G	A	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	silent	c.1143	p.R381	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217	tier1	-	-	70	0	0.00	57	4	6.45
MCF2L2	0	genome.wustl.edu	37	3	182941140	182941140	+	Silent	SNP	C	C	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	182941140	182941140	C	G	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	silent	c.2295	p.L765	0.996	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524				25	0	0.00	17	6	26.09
MIR3143	0	genome.wustl.edu	37	6	27115407	27115407	+	RNA	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	27115407	27115407	G	A	SNP	MIR3143	ENST00000584253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3143	HGNC	ENSG00000265565	tier1	-	-	35	0	0.00	48	8	14.29
MIR764	0	genome.wustl.edu	37	X	113873947	113873947	+	RNA	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	X	113873947	113873947	C	A	SNP	MIR764	ENST00000390811	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR764	HGNC	ENSG00000212100	tier1	-	-	27	0	0.00	21	9	30.00
MSL2	0	genome.wustl.edu	37	3	135871405	135871405	+	Silent	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	135871405	135871405	T	C	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	silent	c.318	p.L106	0.942	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	tier1	-	-	63	0	0.00	76	19	20.00
MTHFD1L	0	genome.wustl.edu	37	6	151247388	151247388	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	151247388	151247388	A	G	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	missense	c.1213	p.R405G	0.999	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	tier1	-	-	70	0	0.00	38	9	19.15
MTOR	0	genome.wustl.edu	37	1	11292543	11292543	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	11292543	11292543	T	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.2464	p.I822V	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	tier1	-	-	20	0	0.00	23	8	25.81
MYH15	0	genome.wustl.edu	37	3	108127166	108127166	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	108127166	108127166	T	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	missense	c.4641	p.E1547D	0.931	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	tier1	-	-	57	0	0.00	82	6	6.82
MYH4	0	genome.wustl.edu	37	17	10350382	10350382	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	10350382	10350382	G	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.5117	p.A1706E	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	tier1	-	-	50	0	0.00	63	9	12.50
MYH7	0	genome.wustl.edu	37	14	23898239	23898239	+	Silent	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	23898239	23898239	A	G	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	silent	c.1332	p.N444	0.977	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	55	0	0.00	62	19	23.46
MYH7	0	genome.wustl.edu	37	14	23898270	23898270	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	23898270	23898270	C	T	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.1301	p.R434K	0.997	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	54	0	0.00	74	21	22.11
NEB	0	genome.wustl.edu	37	2	152425154	152425154	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	152425154	152425154	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.17612	p.Q5871R	0.950	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	48	0	0.00	50	4	7.41
NFE2L1	0	genome.wustl.edu	37	17	46135808	46135808	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	46135808	46135808	T	C	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	missense	c.1124	p.F375S	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				27	0	0.00	31	2	6.06
NUP210	0	genome.wustl.edu	37	3	13373869	13373869	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	13373869	13373869	G	A	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	nonsense	c.3859	p.Q1287*	0.999	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				74	0	0.00	75	4	5.06
NXPE4	0	genome.wustl.edu	37	11	114450998	114450998	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	114450998	114450998	G	A	SNP	NXPE4	ENST00000375478	human	ensembl	74_37	-1	known	missense	c.955	p.H319Y	0.001	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE4	HGNC	ENSG00000137634				53	0	0.00	60	4	6.25
OGT	0	genome.wustl.edu	37	X	70783039	70783039	+	Silent	SNP	G	G	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	X	70783039	70783039	G	C	SNP	OGT	ENST00000373719	human	ensembl	74_37	+1	known	silent	c.2208	p.L736	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162	tier1	-	-	32	0	0.00	25	4	13.79
OPN3	0	genome.wustl.edu	37	1	241767755	241767755	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	241767755	241767755	G	C	SNP	OPN3	ENST00000366554	human	ensembl	74_37	-1	known	missense	c.500	p.A167G	0.784	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OPN3	HGNC	ENSG00000054277	tier1	-	-	37	0	0.00	44	11	20.00
OR5H14	0	genome.wustl.edu	37	3	97868967	97868967	+	Silent	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	97868967	97868967	A	G	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	silent	c.738	p.L246	0.010	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				45	0	0.00	63	4	5.97
OR5H6	0	genome.wustl.edu	37	3	97983602	97983602	+	Silent	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	97983602	97983602	T	C	SNP	OR5H6	ENST00000383696	human	ensembl	74_37	+1	known	silent	c.474	p.I158	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	tier1	rs75354046	-	45	0	0.00	86	6	6.52
OR8B3	0	genome.wustl.edu	37	11	124266927	124266927	+	Silent	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	124266927	124266927	A	G	SNP	OR8B3	ENST00000354597	human	ensembl	74_37	-1	known	silent	c.321	p.F107	0.691	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B3	HGNC	ENSG00000196661				37	0	0.00	25	2	7.41
PCLO	0	genome.wustl.edu	37	7	82580258	82580258	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	7	82580258	82580258	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.9646	p.L3216V	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	39	0	0.00	27	6	18.18
PCNT	0	genome.wustl.edu	37	21	47849958	47849958	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	21	47849958	47849958	G	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.7725	p.K2575N	0.237	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299	tier1	-	-	47	0	0.00	56	4	6.67
PHF20	0	genome.wustl.edu	37	20	34443197	34443197	+	RNA	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	20	34443197	34443197	G	T	SNP	PHF20	ENST00000486408	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.132	-	-	-	no_errors	PHF20	HGNC	ENSG00000025293	tier1	-	-	73	0	0.00	47	4	7.84
PHF3	0	genome.wustl.edu	37	6	64487856	64487856	+	RNA	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	64487856	64487856	G	A	SNP	PHF3	ENST00000420043	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PHF3	HGNC	ENSG00000118482	tier1	-	-	38	0	0.00	54	4	6.90
PIEZO2	0	genome.wustl.edu	37	18	10681730	10681730	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	18	10681730	10681730	G	A	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	silent	c.1239	p.A413	1.000	pfam_Piezo	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				42	0	0.00	33	5	13.16
PIK3CD	0	genome.wustl.edu	37	1	9775790	9775790	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	9775790	9775790	G	T	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.333	p.K111N	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	tier1	-	-	42	0	0.00	53	4	7.02
PIP5K1C	0	genome.wustl.edu	37	19	3644144	3644144	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	19	3644144	3644144	C	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.1451	p.R484Q	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	tier1	-	-	60	0	0.00	57	15	20.55
PNN	0	genome.wustl.edu	37	14	39650489	39650489	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	39650489	39650489	G	T	SNP	PNN	ENST00000216832	human	ensembl	74_37	+1	known	nonsense	c.1576	p.E526*	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941				38	0	0.00	38	2	5.00
PRKACA	0	genome.wustl.edu	37	19	14208265	14208265	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	19	14208265	14208265	G	T	SNP	PRKACA	ENST00000308677	human	ensembl	74_37	-1	known	missense	c.673	p.L225M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	tier1	-	-	24	0	0.00	19	5	20.83
PROB1	0	genome.wustl.edu	37	5	138729546	138729546	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	138729546	138729546	A	T	SNP	PROB1	ENST00000434752	human	ensembl	74_37	-1	known	missense	c.1225	p.C409S	0.970	NULL	NULL	-	no_errors	PROB1	HGNC	ENSG00000228672	tier1	-	-	46	0	0.00	22	7	24.14
PRRC2C	0	genome.wustl.edu	37	1	171511148	171511149	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	171511148	171511149	-	A	INS	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	frame_shift_ins	c.4543_4544	p.N1518fs	1.000:1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523	tier1			12	0	0.00	10	3	23.08
PTPRF	0	genome.wustl.edu	37	1	44019257	44019257	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	44019257	44019257	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	silent	c.186	p.P62	0.029	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	tier1	-	-	59	0	0.00	53	10	15.87
PTPRU	0	genome.wustl.edu	37	1	29647330	29647330	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	29647330	29647330	C	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.3851	p.S1284Y	0.999	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	46	0	0.00	57	10	14.93
PTPRU	0	genome.wustl.edu	37	1	29647331	29647331	+	Silent	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	29647331	29647331	C	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	silent	c.3852	p.S1284	0.151	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	45	0	0.00	55	10	15.38
RBMXL1	0	genome.wustl.edu	37	1	89448692	89448692	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	89448692	89448692	G	A	SNP	RBMXL1	ENST00000321792	human	ensembl	74_37	-1	known	missense	c.818	p.S273L	0.998	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516	tier1	-	-	100	0	0.00	81	18	18.18
RCOR1	0	genome.wustl.edu	37	14	103180893	103180893	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	103180893	103180893	C	T	SNP	RCOR1	ENST00000262241	human	ensembl	74_37	+1	known	missense	c.992	p.A331V	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom,prints_Antifreeze_1	-	no_errors	RCOR1	HGNC	ENSG00000089902				18	0	0.00	22	2	8.33
REXO1L1	0	genome.wustl.edu	37	8	86575286	86575286	+	Silent	SNP	T	T	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	8	86575286	86575286	T	A	SNP	REXO1L1	ENST00000379010	human	ensembl	74_37	-1	putative	silent	c.441	p.A147	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1L1	HGNC	ENSG00000205176				122	0	0.00	130	7	5.11
RHOD	0	genome.wustl.edu	37	11	66834221	66834221	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	66834221	66834221	A	G	SNP	RHOD	ENST00000308831	human	ensembl	74_37	+1	known	missense	c.233	p.Y78C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOD	HGNC	ENSG00000173156				24	0	0.00	36	2	5.26
RIMS1	0	genome.wustl.edu	37	6	73043353	73043353	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	73043353	73043353	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4181	p.S1394F	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				30	0	0.00	32	2	5.88
RNF166	0	genome.wustl.edu	37	16	88766056	88766056	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	88766056	88766056	C	T	SNP	RNF166	ENST00000312838	human	ensembl	74_37	-1	known	missense	c.397	p.V133M	1.000	NULL	pfam_Di19_Zn_binding,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF166	HGNC	ENSG00000158717	tier1	-	-	36	0	0.00	43	4	8.51
RNF19A	0	genome.wustl.edu	37	8	101300299	101300299	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	8	101300299	101300299	T	C	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	missense	c.104	p.H35R	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	tier1	-	-	25	0	0.00	30	9	23.08
RNLS	0	genome.wustl.edu	37	10	90045196	90045196	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	10	90045196	90045196	C	A	SNP	RNLS	ENST00000331772	human	ensembl	74_37	-1	known	missense	c.944	p.G315V	1.000	NULL	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	tier1	-	-	60	0	0.00	79	6	7.06
RRAGC	0	genome.wustl.edu	37	1	39317319	39317319	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	39317319	39317319	G	A	SNP	RRAGC	ENST00000373001	human	ensembl	74_37	-1	known	silent	c.867	p.I289	1.000	pfam_Gtr1_RagA	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGC	HGNC	ENSG00000116954				38	0	0.00	34	2	5.56
SEL1L3	0	genome.wustl.edu	37	4	25823745	25823745	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	25823745	25823745	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.1163	p.R388Q	0.219	superfamily_ConA-like_lec_gl_sf	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				44	0	0.00	34	6	15.00
SF1	0	genome.wustl.edu	37	11	64533469	64533469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	64533469	64533469	C	-	DEL	SF1	ENST00000377390	human	ensembl	74_37	-1	known	frame_shift_del	c.1741	p.A581fs	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	tier1			8	0	0.00	7	2	22.22
SH2D1B	0	genome.wustl.edu	37	1	162367093	162367093	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	162367093	162367093	C	A	SNP	SH2D1B	ENST00000367929	human	ensembl	74_37	-1	known	missense	c.376	p.D126Y	0.007	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D1B	HGNC	ENSG00000198574	tier1	-	-	24	0	0.00	25	7	21.88
SH2D2A	0	genome.wustl.edu	37	1	156779493	156779493	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	156779493	156779493	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.704	p.A235V	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	tier1	-	-	56	0	0.00	66	14	17.50
SH2D2A	0	genome.wustl.edu	37	1	156779494	156779494	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	156779494	156779494	C	A	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.703	p.A235S	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	tier1	-	-	56	0	0.00	65	14	17.72
SLC23A2	0	genome.wustl.edu	37	20	4850569	4850569	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	20	4850569	4850569	G	-	DEL	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	frame_shift_del	c.1233	p.I412fs	0.974	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057	tier1			25	0	0.00	30	4	11.76
SLC6A5	0	genome.wustl.edu	37	11	20623021	20623021	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	20623021	20623021	C	T	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.990	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	tier1	-	-	41	0	0.00	53	11	17.19
SNX17	0	genome.wustl.edu	37	2	27599187	27599187	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	27599187	27599187	G	T	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.1190	p.R397L	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				15	0	0.00	27	5	15.62
SORBS2	0	genome.wustl.edu	37	4	186605996	186605996	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	186605996	186605996	G	A	SNP	SORBS2	ENST00000355634	human	ensembl	74_37	-1	putative	silent	c.15	p.S5	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	tier1	-	-	24	0	0.00	25	7	21.88
SPTBN2	0	genome.wustl.edu	37	11	66458874	66458874	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	11	66458874	66458874	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.5446	p.R1816W	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898	tier1	-	-	27	0	0.00	50	13	20.63
SYNE2	0	genome.wustl.edu	37	14	64520206	64520206	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	14	64520206	64520206	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.9575	p.C3192F	0.992	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	tier1	-	-	50	0	0.00	37	4	9.76
TDRD15	0	genome.wustl.edu	37	2	21361130	21361130	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	21361130	21361130	C	G	SNP	TDRD15	ENST00000405799	human	ensembl	74_37	+1	novel	missense	c.791	p.T264S	0.164	pfam_Tudor	pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD15	HGNC	ENSG00000218819	tier1	-	-	28	0	0.00	9	5	35.71
TLN2	0	genome.wustl.edu	37	15	63042648	63042648	+	Silent	SNP	C	C	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	15	63042648	63042648	C	G	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.4167	p.L1389	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	85	0	0.00	74	14	15.91
TMEM235	0	genome.wustl.edu	37	17	76227704	76227704	+	Silent	SNP	C	C	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	76227704	76227704	C	A	SNP	TMEM235	ENST00000421688	human	ensembl	74_37	+1	known	silent	c.150	p.S50	0.004	NULL	NULL	-	no_errors	TMEM235	HGNC	ENSG00000204278				52	0	0.00	46	4	8.00
TP53	0	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	17	7577538	7577538	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.743	p.R248Q	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs11540652	-	242	0	0.00	214	253	54.18
TRIM24	0	genome.wustl.edu	37	7	138189074	138189074	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	7	138189074	138189074	C	T	SNP	TRIM24	ENST00000343526	human	ensembl	74_37	+1	known	missense	c.404	p.A135V	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779	tier1	-	-	23	0	0.00	15	3	16.67
TTC21B	0	genome.wustl.edu	37	2	166737308	166737308	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	166737308	166737308	G	T	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.3686	p.S1229Y	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				18	0	0.00	36	2	5.26
TTI1	0	genome.wustl.edu	37	20	36640246	36640246	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	20	36640246	36640246	T	A	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.1973	p.E658V	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407	tier1	-	-	38	0	0.00	51	12	19.05
TTN	0	genome.wustl.edu	37	2	179444679	179444679	+	Silent	SNP	A	A	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	179444679	179444679	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.59631	p.A19877	0.837	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	28	0	0.00	40	4	9.09
TTN	0	genome.wustl.edu	37	2	179455006	179455006	+	Silent	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	179455006	179455006	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.53742	p.C17914	0.997	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	68	0	0.00	86	22	20.37
TTN-AS1	0	genome.wustl.edu	37	2	179578934	179578934	+	RNA	SNP	T	T	C			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	2	179578934	179578934	T	C	SNP	TTN-AS1	ENST00000431752	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.082	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298	tier1	-	-	49	0	0.00	57	4	6.56
UMOD	0	genome.wustl.edu	37	16	20360484	20360484	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	16	20360484	20360484	C	T	SNP	UMOD	ENST00000424589	human	ensembl	74_37	-1	known	missense	c.238	p.V80I	0.001	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344	tier1	-	-	46	0	0.00	41	4	8.89
WDR70	0	genome.wustl.edu	37	5	37725063	37725063	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	5	37725063	37725063	C	T	SNP	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	missense	c.1625	p.P542L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068	tier1	-	-	37	0	0.00	54	9	14.29
WNT3A	0	genome.wustl.edu	37	1	228210523	228210523	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	1	228210523	228210523	A	T	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	missense	c.227	p.E76V	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342	tier1	-	-	31	0	0.00	53	8	13.11
ZBTB22	0	genome.wustl.edu	37	6	33284415	33284415	+	Silent	SNP	G	G	A			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	6	33284415	33284415	G	A	SNP	ZBTB22	ENST00000418724	human	ensembl	74_37	-1	known	silent	c.279	p.S93	0.995	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104	tier1	-	-	50	0	0.00	51	13	20.31
ZMYND19	0	genome.wustl.edu	37	9	140482271	140482271	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	9	140482271	140482271	C	T	SNP	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	missense	c.116	p.R39Q	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724	tier1	-	-	71	0	0.00	42	8	16.00
ZNF487	0	genome.wustl.edu	37	10	43977916	43977916	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	10	43977916	43977916	C	G	SNP	ZNF487	ENST00000431662	human	ensembl	74_37	+1	known	missense	c.831	p.I277M	0.982	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF487	HGNC	ENSG00000243660				19	0	0.00	15	2	11.76
ZNF860	0	genome.wustl.edu	37	3	32030982	32030982	+	Silent	SNP	C	C	T			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	3	32030982	32030982	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	silent	c.411	p.S137	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385	tier1	-	-	60	0	0.00	59	5	7.81
ZNF876P	0	genome.wustl.edu	37	4	248026	248026	+	RNA	SNP	A	A	G			TCGA-LN-A4A5-01A-21D-A27G-09	TCGA-LN-A4A5-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4704fb64-2188-4d0c-9998-8454caf72eb2	ed9afb38-29fe-4207-a07b-f6a68ba2cf45	4	248026	248026	A	G	SNP	ZNF876P	ENST00000356347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.351	-	-	-	no_errors	ZNF876P	HGNC	ENSG00000198155	tier1	-	-	32	0	0.00	26	4	13.33
