Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACAN	0	genome.wustl.edu	37	15	89400477	89400477	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	89400477	89400477	G	T	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.4661	p.G1554V	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				56	0	0.00	55	10	15.38
ADAMTSL4	0	genome.wustl.edu	37	1	150524368	150524368	+	RNA	DEL	A	A	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	150524368	150524368	A	-	DEL	ADAMTSL4	ENST00000483335	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	tier1			10	0	0.00	8	3	27.27
AHNAK	0	genome.wustl.edu	37	11	62297376	62297376	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	62297376	62297376	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.4513	p.D1505N	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	99	0	0.00	84	26	23.64
ALG5	0	genome.wustl.edu	37	13	37563687	37563687	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	13	37563687	37563687	A	T	SNP	ALG5	ENST00000239891	human	ensembl	74_37	-1	known	nonsense	c.381	p.Y127*	0.747	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697				30	0	0.00	24	2	7.69
AMDHD1	0	genome.wustl.edu	37	12	96350709	96350709	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	96350709	96350709	G	A	SNP	AMDHD1	ENST00000266736	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	0.985	superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344				25	0	0.00	37	4	9.76
ANKRD17	0	genome.wustl.edu	37	4	73951038	73951038	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	73951038	73951038	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.7087	p.A2363T	0.005	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				43	0	0.00	36	3	7.69
ANKRD24	0	genome.wustl.edu	37	19	4210081	4210081	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	4210081	4210081	G	T	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	missense	c.897	p.Q299H	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	tier1	-	-	82	0	0.00	63	4	5.97
ANKRD66	0	genome.wustl.edu	37	6	46721477	46721477	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	46721477	46721477	G	A	SNP	ANKRD66	ENST00000565422	human	ensembl	74_37	+1	known	missense	c.347	p.R116Q	0.023	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD66	HGNC	ENSG00000230062	tier1	-	-	48	0	0.00	20	26	56.52
ANO3	0	genome.wustl.edu	37	11	26569083	26569083	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	26569083	26569083	T	A	SNP	ANO3	ENST00000256737	human	ensembl	74_37	+1	known	missense	c.1275	p.N425K	0.968	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	tier1	-	-	59	0	0.00	23	16	41.03
APOL2	0	genome.wustl.edu	37	22	36633075	36633075	+	RNA	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	22	36633075	36633075	G	A	SNP	APOL2	ENST00000473549	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	APOL2	HGNC	ENSG00000128335	tier1	-	-	11	0	0.00	6	4	40.00
ARHGAP9	0	genome.wustl.edu	37	12	57869326	57869326	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	57869326	57869326	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	missense	c.1441	p.E481K	0.888	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				38	0	0.00	38	2	5.00
ARL14EP	0	genome.wustl.edu	37	11	30352585	30352585	+	Silent	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	30352585	30352585	T	A	SNP	ARL14EP	ENST00000282032	human	ensembl	74_37	+1	known	silent	c.90	p.T30	0.997	NULL	NULL	-	no_errors	ARL14EP	HGNC	ENSG00000152219	tier1	-	-	19	0	0.00	9	4	30.77
ATAD5	0	genome.wustl.edu	37	17	29161960	29161960	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	17	29161960	29161960	G	T	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.861	p.M287I	0.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				9	0	0.00	20	3	13.04
ATP8B1	0	genome.wustl.edu	37	18	55334329	55334329	+	Silent	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	55334329	55334329	A	G	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	silent	c.2280	p.D760	0.993	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923	tier1	-	-	19	0	0.00	22	7	24.14
B4GALT7	0	genome.wustl.edu	37	5	177036632	177036632	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	177036632	177036632	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	+1	known	missense	c.920	p.C307Y	1.000	NULL	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT7	HGNC	ENSG00000027847	tier1	-	-	39	0	0.00	41	4	8.89
C18orf61	0	genome.wustl.edu	37	18	12212039	12212039	+	RNA	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	12212039	12212039	A	G	SNP	C18orf61	ENST00000586642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.760	-	-	-	no_errors	RP11-64C12.3	Clone_based_vega_gene	ENSG00000267733				41	0	0.00	51	5	8.93
C20orf112	0	genome.wustl.edu	37	20	31041555	31041556	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	20	31041555	31041556	-	G	INS	C20orf112	ENST00000359676	human	ensembl	74_37	-1	known	frame_shift_ins	c.397_396	p.Y132fs	0.997:0.034	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183	tier1			24	0	0.00	19	5	20.83
C5orf42	0	genome.wustl.edu	37	5	37196019	37196019	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	37196019	37196019	A	T	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.3752	p.F1251Y	0.992	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	tier1	-	-	38	0	0.00	70	9	11.39
CACNA1G	0	genome.wustl.edu	37	17	48673930	48673930	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	17	48673930	48673930	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.2987	p.A996V	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				83	0	0.00	65	4	5.80
CACNA2D1	0	genome.wustl.edu	37	7	81591785	81591785	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	81591785	81591785	C	G	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	missense	c.2843	p.S948T	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956	tier1	-	-	46	0	0.00	46	12	20.69
CARKD	0	genome.wustl.edu	37	13	111268083	111268083	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	13	111268083	111268083	C	T	SNP	CARKD	ENST00000309957	human	ensembl	74_37	+1	known	missense	c.62	p.S21L	0.001	NULL	pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel	-	no_errors	CARKD	HGNC	ENSG00000213995	tier1	-	-	29	0	0.00	10	3	23.08
CASP5	0	genome.wustl.edu	37	11	104879584	104879584	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	104879584	104879584	G	T	SNP	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	missense	c.170	p.S57Y	0.001	NULL	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	tier1	-	-	110	0	0.00	76	16	17.39
CC2D2A	0	genome.wustl.edu	37	4	15562218	15562218	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	15562218	15562218	T	C	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.2987	p.I996T	0.993	NULL	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342	tier1	-	-	59	0	0.00	23	27	54.00
CCDC18	0	genome.wustl.edu	37	1	93648967	93648967	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	93648967	93648967	A	G	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.403	p.S135G	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				25	0	0.00	23	5	17.86
CCL20	0	genome.wustl.edu	37	2	228680154	228680154	+	RNA	DEL	T	T	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	228680154	228680154	T	-	DEL	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	tier1			10	0	0.00	9	5	35.71
CCP110	0	genome.wustl.edu	37	16	19554028	19554028	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	19554028	19554028	G	T	SNP	CCP110	ENST00000381396	human	ensembl	74_37	+1	known	missense	c.2313	p.L771F	1.000	NULL	NULL	-	no_errors	CCP110	HGNC	ENSG00000103540				26	0	0.00	42	3	6.67
CCZ1	0	genome.wustl.edu	37	7	5942299	5942299	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	5942299	5942299	A	G	SNP	CCZ1	ENST00000325974	human	ensembl	74_37	+1	known	missense	c.446	p.N149S	1.000	pfam_DUF1712_fun	pfam_DUF1712_fun	-	no_errors	CCZ1	HGNC	ENSG00000122674	tier1	-	-	75	0	0.00	85	28	24.78
CD163	0	genome.wustl.edu	37	12	7639546	7639546	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	7639546	7639546	G	T	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	nonsense	c.2087	p.S696*	0.033	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				38	0	0.00	33	2	5.71
CDC42BPG	0	genome.wustl.edu	37	11	64609344	64609344	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	64609344	64609344	G	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.193	p.R65C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	tier1	-	-	21	0	0.00	16	4	20.00
CDKL4	0	genome.wustl.edu	37	2	39417577	39417577	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	39417577	39417577	C	T	SNP	CDKL4	ENST00000378803	human	ensembl	74_37	-1	known	missense	c.521	p.G174E	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	tier1	-	-	24	0	0.00	41	16	28.07
CERS2	0	genome.wustl.edu	37	1	150937700	150937700	+	RNA	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	150937700	150937700	T	G	SNP	CERS2	ENST00000345896	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.074	-	-	-	no_errors	CERS2	HGNC	ENSG00000143418	tier1	-	-	69	0	0.00	68	6	8.11
CGNL1	0	genome.wustl.edu	37	15	57730212	57730212	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	57730212	57730212	C	T	SNP	CGNL1	ENST00000281282	human	ensembl	74_37	+1	known	silent	c.15	p.F5	0.945	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	tier1	-	-	55	0	0.00	33	6	15.38
CHD2	0	genome.wustl.edu	37	15	93540315	93540316	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	93540315	93540316	-	A	INS	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	frame_shift_ins	c.3724_3725	p.Y1246fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	tier1			30	0	0.00	27	4	12.90
CHRM2	0	genome.wustl.edu	37	7	136700551	136700551	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	136700551	136700551	C	T	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	silent	c.939	p.G313	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	tier1	-	-	26	0	0.00	11	11	50.00
CIRH1A	0	genome.wustl.edu	37	16	69194279	69194279	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	69194279	69194279	C	G	SNP	CIRH1A	ENST00000314423	human	ensembl	74_37	+1	known	missense	c.1465	p.L489V	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	tier1	-	-	32	0	0.00	27	9	25.00
CKAP5	0	genome.wustl.edu	37	11	46810291	46810291	+	Silent	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	46810291	46810291	T	C	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.1908	p.P636	0.990	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	tier1	-	-	25	0	0.00	16	11	40.74
CLDN18	0	genome.wustl.edu	37	3	137729265	137729265	+	Nonsense_Mutation	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	137729265	137729265	T	A	SNP	CLDN18	ENST00000183605	human	ensembl	74_37	+1	known	nonsense	c.198	p.Y66*	0.896	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405	tier1	-	-	52	0	0.00	36	26	41.94
CNGA3	0	genome.wustl.edu	37	2	98994176	98994176	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	98994176	98994176	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.128	p.S43L	0.014	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	tier1	-	-	25	0	0.00	18	4	18.18
CNTN5	0	genome.wustl.edu	37	11	100170076	100170076	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	100170076	100170076	T	G	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.2568	p.N856K	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972	tier1	-	-	25	0	0.00	17	6	26.09
COPG1	0	genome.wustl.edu	37	3	128984416	128984416	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	128984416	128984416	A	G	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	missense	c.1249	p.I417V	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789	tier1	-	-	25	0	0.00	28	8	22.22
COQ5	0	genome.wustl.edu	37	12	120960101	120960101	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	120960101	120960101	T	C	SNP	COQ5	ENST00000288532	human	ensembl	74_37	-1	known	missense	c.268	p.I90V	0.993	pfam_UbiE/COQ5_MeTrFase	pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_11,pfam_Methyltransf_12,tigrfam_UbiE/COQ5_MeTrFase	-	no_errors	COQ5	HGNC	ENSG00000110871	tier1	-	-	28	0	0.00	23	12	34.29
CPT1C	0	genome.wustl.edu	37	19	50207991	50207991	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	50207991	50207991	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	74_37	+1	known	missense	c.718	p.V240M	0.997	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	tier1	-	-	39	0	0.00	15	4	21.05
CRKL	0	genome.wustl.edu	37	22	21272499	21272499	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	22	21272499	21272499	C	T	SNP	CRKL	ENST00000354336	human	ensembl	74_37	+1	known	silent	c.277	p.L93	1.000	smart_SH2,pfscan_SH2	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRKL	HGNC	ENSG00000099942	tier1	-	-	14	0	0.00	10	5	33.33
CSMD3	0	genome.wustl.edu	37	8	113299359	113299359	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	113299359	113299359	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9265	p.H3089Y	0.999	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	82	0	0.00	54	32	37.21
CSMD3	0	genome.wustl.edu	37	8	114290890	114290890	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	114290890	114290890	A	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.445	p.S149A	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	31	0	0.00	54	5	8.47
DAAM1	0	genome.wustl.edu	37	14	59789936	59789936	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	14	59789936	59789936	G	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.767	p.R256H	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				22	0	0.00	28	4	12.50
DBNL	0	genome.wustl.edu	37	7	44098544	44098544	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	44098544	44098544	G	C	SNP	DBNL	ENST00000468694	human	ensembl	74_37	+1	known	missense	c.824	p.R275T	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DBNL	HGNC	ENSG00000136279				45	0	0.00	41	3	6.82
DHRSX	0	genome.wustl.edu	37	X	2184836	2184836	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	2184836	2184836	C	T	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	missense	c.541	p.V181I	1.000	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084	tier1	-	-	145	0	0.00	131	25	15.92
DNAH5	0	genome.wustl.edu	37	5	13871845	13871845	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	13871845	13871845	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.3426	p.K1142N	0.605	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	-	-	65	0	0.00	60	17	22.08
DNM1P47	0	genome.wustl.edu	37	15	102294753	102294753	+	RNA	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	102294753	102294753	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				14	0	0.00	27	3	10.00
DPH2	0	genome.wustl.edu	37	1	44435941	44435941	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	44435941	44435941	G	A	SNP	DPH2	ENST00000255108	human	ensembl	74_37	+1	known	missense	c.94	p.V32M	0.095	tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768				24	0	0.00	19	5	20.83
DSCAML1	0	genome.wustl.edu	37	11	117667753	117667753	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	117667753	117667753	G	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.222	p.H74Q	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103	tier1	-	-	30	0	0.00	14	3	17.65
DYNC1I2	0	genome.wustl.edu	37	2	172549338	172549339	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	172549338	172549339	-	A	INS	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_ins	c.160_161	p.R57fs	1.000:1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380	tier1			26	0	0.00	35	3	7.89
EIF3K	0	genome.wustl.edu	37	19	39123261	39123261	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	39123261	39123261	A	T	SNP	EIF3K	ENST00000248342	human	ensembl	74_37	+1	known	missense	c.442	p.I148F	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25,superfamily_ARM-type_fold	-	no_errors	EIF3K	HGNC	ENSG00000178982	tier1	-	-	59	0	0.00	37	20	35.09
ENSG00000203849	0	genome.wustl.edu	37	1	142620909	142620909	+	RNA	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	142620909	142620909	C	A	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.074	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				39	0	0.00	35	3	7.89
ENSG00000205444	0	genome.wustl.edu	37	6	4610914	4610914	+	RNA	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	4610914	4610914	T	G	SNP	ENSG00000205444	ENST00000380106	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-529N6.1	Clone_based_vega_gene	ENSG00000205444	tier1	-	-	17	0	0.00	16	10	38.46
ENSG00000240801	0	genome.wustl.edu	37	11	2150629	2150629	+	RNA	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	2150629	2150629	G	T	SNP	ENSG00000240801	ENST00000430034	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.211	-	-	-	no_errors	AC132217.4	Clone_based_vega_gene	ENSG00000240801	tier1	-	-	10	0	0.00	9	7	43.75
ENSG00000259605	0	genome.wustl.edu	37	19	46273048	46273048	+	RNA	SNP	C	C	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	46273048	46273048	C	G	SNP	ENSG00000259605	ENST00000592217	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	AC074212.5	Clone_based_vega_gene	ENSG00000259605	tier1	-	-	108	0	0.00	34	22	39.29
ENSG00000262477	0	genome.wustl.edu	37	18	29993186	29993186	+	RNA	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	29993186	29993186	C	T	SNP	ENSG00000262477	ENST00000573479	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.078	-	-	-	no_errors	AC021224.1	Clone_based_ensembl_gene	ENSG00000262477	tier1	-	-	37	0	0.00	39	13	25.00
EPRS	0	genome.wustl.edu	37	1	220208321	220208321	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	220208321	220208321	G	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.166	p.R56S	1.000	NULL	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				13	0	0.00	36	2	5.26
ERV3-1	0	genome.wustl.edu	37	7	64452815	64452815	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	64452815	64452815	C	A	SNP	ERV3-1	ENST00000394323	human	ensembl	74_37	-1	known	missense	c.590	p.C197F	0.475	NULL	NULL	-	no_errors	ERV3-1	HGNC	ENSG00000213462	tier1	-	-	33	0	0.00	25	5	16.13
ERV3-1	0	genome.wustl.edu	37	7	64452816	64452816	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	64452816	64452816	A	G	SNP	ERV3-1	ENST00000394323	human	ensembl	74_37	-1	known	missense	c.589	p.C197R	0.453	NULL	NULL	-	no_errors	ERV3-1	HGNC	ENSG00000213462	tier1	-	-	33	0	0.00	26	6	18.75
ETV5	0	genome.wustl.edu	37	3	185766490	185766490	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	185766490	185766490	C	T	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.1597	p.A533T	0.512	NULL	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405	tier1	-	-	58	0	0.00	43	27	38.57
EXOC3L1	0	genome.wustl.edu	37	16	67222636	67222636	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	67222636	67222636	G	A	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.415	p.R139W	0.982	NULL	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044	tier1	-	-	46	0	0.00	28	17	37.78
FAT2	0	genome.wustl.edu	37	5	150946655	150946655	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	150946655	150946655	T	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.1838	p.N613S	0.954	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	39	0	0.00	19	23	54.76
FGD5P1	0	genome.wustl.edu	37	3	13976015	13976015	+	RNA	DEL	T	T	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	13976015	13976015	T	-	DEL	FGD5P1	ENST00000502451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.827	-	-	-	no_errors	FGD5P1	HGNC	ENSG00000250439	tier1			15	0	0.00	13	2	13.33
FOLR3	0	genome.wustl.edu	37	11	71850422	71850422	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	71850422	71850422	T	G	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.515	p.L172R	0.881	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	tier1	-	-	64	0	0.00	112	22	16.30
FRMPD3	0	genome.wustl.edu	37	X	106846540	106846540	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	106846540	106846540	C	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	silent	c.5370	p.G1790	0.984	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234	tier1	-	-	29	0	0.00	16	10	38.46
GAGE2D	0	genome.wustl.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	49208295	49208296	0	TAT	INS	GAGE2D	ENST00000404720	human	ensembl	74_37	+1	known	in_frame_ins	c.24_25	p.9in_frame_insY	0.002:0.002	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE2D	HGNC	ENSG00000240257				22	0	0.00	37	8	17.78
GCOM1	0	genome.wustl.edu	37	15	57921909	57921909	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	57921909	57921909	G	C	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	missense	c.535	p.V179L	0.981	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				36	0	0.00	42	3	6.67
GEN1	0	genome.wustl.edu	37	2	17962626	17962626	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	17962626	17962626	C	T	SNP	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	missense	c.2147	p.T716I	0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				15	0	0.00	31	2	6.06
GFRA3	0	genome.wustl.edu	37	5	137600203	137600203	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	137600203	137600203	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	silent	c.126	p.N42	0.177	prints_GDNF_rcpt_A3	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	tier1	-	-	72	0	0.00	66	10	13.16
GMEB1	0	genome.wustl.edu	37	1	29041385	29041386	+	RNA	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	29041385	29041386	-	A	INS	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.437:0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419	tier1			11	0	0.00	11	6	35.29
GPATCH11	0	genome.wustl.edu	37	2	37316991	37316991	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	37316991	37316991	C	A	SNP	GPATCH11	ENST00000409774	human	ensembl	74_37	+1	known	missense	c.334	p.Q112K	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH11	HGNC	ENSG00000152133	tier1	-	-	39	0	0.00	51	4	7.27
GRHL2	0	genome.wustl.edu	37	8	102570829	102570829	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	102570829	102570829	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	missense	c.467	p.T156M	0.012	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	tier1	-	-	37	0	0.00	35	7	16.67
GRIA4	0	genome.wustl.edu	37	11	105850988	105850989	+	RNA	INS	-	-	AA			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	105850988	105850989	-	AA	INS	GRIA4	ENST00000533094	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.176:0.170	-	-	-	no_errors	GRIA4	HGNC	ENSG00000152578	tier1			58	0	0.00	40	3	6.98
GTF2I	0	genome.wustl.edu	37	7	74167460	74167460	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	74167460	74167460	A	T	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	+1	known	missense	c.2592	p.K864N	0.975	superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809				67	0	0.00	109	12	9.92
GUSB	0	genome.wustl.edu	37	7	65444784	65444784	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	65444784	65444784	C	T	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	missense	c.511	p.A171T	1.000	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	tier1	-	-	48	0	0.00	40	17	29.82
HECW1-IT1	0	genome.wustl.edu	37	7	43157830	43157831	+	RNA	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	43157830	43157831	-	A	INS	HECW1-IT1	ENST00000322220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031:0.000	-	-	-	no_errors	HECW1-IT1	HGNC	ENSG00000181211	tier1			43	0	0.00	46	5	9.80
HGSNAT	0	genome.wustl.edu	37	8	43046701	43046701	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	43046701	43046701	G	T	SNP	HGSNAT	ENST00000458501	human	ensembl	74_37	+1	known	missense	c.1297	p.G433C	0.545	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102	tier1	-	-	60	0	0.00	59	6	9.23
HHLA1	0	genome.wustl.edu	37	8	133112334	133112334	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	133112334	133112334	G	A	SNP	HHLA1	ENST00000414222	human	ensembl	74_37	-1	known	missense	c.187	p.L63F	0.174	NULL	NULL	-	no_errors	HHLA1	HGNC	ENSG00000132297	tier1	-	-	28	0	0.00	31	6	16.22
HIST1H2AL	0	genome.wustl.edu	37	6	27833153	27833153	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	27833153	27833153	G	A	SNP	HIST1H2AL	ENST00000357320	human	ensembl	74_37	+1	known	silent	c.21	p.Q7	0.996	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374	tier1	-	-	53	0	0.00	60	5	7.69
HIST1H3D	0	genome.wustl.edu	37	6	26197139	26197139	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	26197139	26197139	G	T	SNP	HIST1H3D	ENST00000356476	human	ensembl	74_37	-1	known	missense	c.340	p.H114N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3D	HGNC	ENSG00000197409	tier1	-	-	91	0	0.00	53	48	47.52
HMCN1	0	genome.wustl.edu	37	1	185985349	185985349	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	185985349	185985349	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.5169	p.I1723	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				38	0	0.00	37	2	5.13
HSPG2	0	genome.wustl.edu	37	1	22181417	22181417	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	22181417	22181417	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.6057	p.D2019E	0.602	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1	-	-	68	0	0.00	60	4	6.25
IGFBPL1	0	genome.wustl.edu	37	9	38414111	38414111	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	9	38414111	38414111	G	T	SNP	IGFBPL1	ENST00000377694	human	ensembl	74_37	-1	known	missense	c.550	p.P184T	0.899	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Kazal_dom,pfam_IGFBP-like,smart_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	IGFBPL1	HGNC	ENSG00000137142	tier1	-	-	57	0	0.00	38	4	9.52
ITGB1BP1	0	genome.wustl.edu	37	2	9552384	9552384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	9552384	9552384	T	-	DEL	ITGB1BP1	ENST00000483795	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.N101fs	0.000	NULL	pfam_Integrin-bd_ICAP-1	-	no_errors	ITGB1BP1	HGNC	ENSG00000119185	tier1			13	0	0.00	12	3	20.00
JAK1	0	genome.wustl.edu	37	1	65349067	65349067	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	65349067	65349067	T	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.98	p.E33V	0.634	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,smart_Band_41_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	tier1	-	-	30	0	0.00	46	10	17.86
KANSL1L	0	genome.wustl.edu	37	2	210993825	210993825	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	210993825	210993825	G	T	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.1160	p.A387D	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445	tier1	-	-	83	0	0.00	56	4	6.67
KIDINS220	0	genome.wustl.edu	37	2	8919884	8919884	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	8919884	8919884	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	nonsense	c.2290	p.Q764*	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	tier1	-	-	43	0	0.00	58	22	27.50
KIF1A	0	genome.wustl.edu	37	2	241722519	241722519	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	241722519	241722519	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.806	p.A269V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	tier1	-	-	97	0	0.00	67	29	30.21
KIF20B	0	genome.wustl.edu	37	10	91478561	91478561	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	10	91478561	91478561	A	G	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	missense	c.1366	p.I456V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	tier1	-	-	38	0	0.00	15	19	55.88
LARP1	0	genome.wustl.edu	37	5	154181697	154181697	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	154181697	154181697	T	C	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.1616	p.M539T	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				44	0	0.00	44	6	12.00
LEKR1	0	genome.wustl.edu	37	3	156763371	156763371	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	156763371	156763371	C	-	DEL	LEKR1	ENST00000356539	human	ensembl	74_37	+1	known	frame_shift_del	c.1911	p.V639fs	0.000	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000197980	tier1			35	0	0.00	22	12	35.29
LOC100129027	0	genome.wustl.edu	37	21	47250070	47250070	+	RNA	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	21	47250070	47250070	C	T	SNP	LOC100129027	ENST00000380008	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	AL592528.1	Clone_based_vega_gene	ENSG00000205424	tier1	-	-	28	0	0.00	19	6	24.00
LOC101927708	0	genome.wustl.edu	37	11	3602161	3602161	+	RNA	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	3602161	3602161	C	T	SNP	LOC101927708	ENST00000527970	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.708	-	-	-	no_errors	RP13-726E6.2	Clone_based_vega_gene	ENSG00000255367	tier1	rs188013291	-	41	0	0.00	30	9	23.08
LY6G6F	0	genome.wustl.edu	37	6	31675846	31675846	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	31675846	31675846	G	T	SNP	LY6G6F	ENST00000556581	human	ensembl	74_37	+1	known	missense	c.581	p.S194I	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY6G6F	HGNC	ENSG00000204424				45	0	0.00	38	4	9.52
LYST	0	genome.wustl.edu	37	1	235972743	235972743	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	235972743	235972743	C	G	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.1375	p.D459H	0.878	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				26	0	0.00	14	3	17.65
MAGEC3	0	genome.wustl.edu	37	X	140983065	140983065	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	140983065	140983065	C	T	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.920	p.A307V	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	tier1	-	-	25	0	0.00	5	13	72.22
MAGEC3	0	genome.wustl.edu	37	X	140985273	140985273	+	Splice_Site	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	140985273	140985273	G	C	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	splice_site	c.1728+1	e7+1	0.027	-	-	-	no_errors	MAGEC3	HGNC	ENSG00000165509	tier1	-	-	27	0	0.00	10	18	64.29
MAP4K5	0	genome.wustl.edu	37	14	50930823	50930823	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	14	50930823	50930823	T	C	SNP	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	missense	c.766	p.I256V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983	tier1	-	-	33	0	0.00	34	16	32.00
MDC1	0	genome.wustl.edu	37	6	30680031	30680031	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	30680031	30680031	A	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.1688	p.L563H	0.190	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	tier1	-	-	23	0	0.00	18	26	59.09
MIER1	0	genome.wustl.edu	37	1	67390754	67390754	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	67390754	67390754	G	A	SNP	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	missense	c.43	p.G15S	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				12	0	0.00	4	2	33.33
MKNK2	0	genome.wustl.edu	37	19	2046658	2046658	+	Silent	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	2046658	2046658	T	A	SNP	MKNK2	ENST00000250896	human	ensembl	74_37	-1	known	silent	c.84	p.L28	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	tier1	-	-	64	0	0.00	57	7	10.94
MRGPRF	0	genome.wustl.edu	37	11	68773599	68773599	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	68773599	68773599	A	T	SNP	MRGPRF	ENST00000309099	human	ensembl	74_37	-1	known	missense	c.179	p.V60E	0.994	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRF	HGNC	ENSG00000172935	tier1	-	-	53	0	0.00	150	11	6.83
MROH2B	0	genome.wustl.edu	37	5	41000790	41000790	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	41000790	41000790	T	G	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.4340	p.K1447T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495	tier1	-	-	21	0	0.00	37	8	17.78
MSRB1	0	genome.wustl.edu	37	16	1993105	1993105	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	1993105	1993105	G	T	SNP	MSRB1	ENST00000399753	human	ensembl	74_37	-1	putative	missense	c.53	p.P18H	0.999	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like	-	no_errors	MSRB1	HGNC	ENSG00000198736				27	0	0.00	22	3	12.00
MT-CO2	0	genome.wustl.edu	37	MT	8090	8090	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	MT	8090	8090	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.505	p.G169S	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	22	0	0.00	12	11	47.83
MUC4	0	genome.wustl.edu	37	3	195513768	195513768	+	Silent	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	195513768	195513768	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.4683	p.V1561	0.039	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	346	0	0.00	434	44	9.21
MXRA5	0	genome.wustl.edu	37	X	3228543	3228543	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	3228543	3228543	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.7701	p.A2567	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				22	0	0.00	23	4	14.81
NCEH1	0	genome.wustl.edu	37	3	172351286	172351286	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	172351286	172351286	C	T	SNP	NCEH1	ENST00000538775	human	ensembl	74_37	-1	known	silent	c.1326	p.K442	1.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	NCEH1	HGNC	ENSG00000144959	tier1	-	-	147	0	0.00	142	47	24.87
NECAB1	0	genome.wustl.edu	37	8	91962044	91962044	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	91962044	91962044	A	G	SNP	NECAB1	ENST00000417640	human	ensembl	74_37	+1	known	missense	c.870	p.I290M	0.976	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB1	HGNC	ENSG00000123119	tier1	-	-	74	0	0.00	35	26	41.94
NID1	0	genome.wustl.edu	37	1	236187381	236187381	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	236187381	236187381	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.2117	p.R706Q	0.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	tier1	-	-	27	0	0.00	22	20	47.62
NR1I2	0	genome.wustl.edu	37	3	119533916	119533916	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	119533916	119533916	G	T	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.1002	p.E334D	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852	tier1	-	-	70	0	0.00	46	4	8.00
NRP2	0	genome.wustl.edu	37	2	206628610	206628610	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	206628610	206628610	G	T	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	nonsense	c.2257	p.E753*	0.975	pirsf_Neuropilin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	tier1	-	-	45	0	0.00	33	8	19.51
NSD1	0	genome.wustl.edu	37	5	176683973	176683973	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	176683973	176683973	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.4787	p.C1596F	1.000	smart_Znf_PHD	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671	tier1	-	-	55	0	0.00	32	35	52.24
NYAP2	0	genome.wustl.edu	37	2	226447051	226447051	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	226447051	226447051	C	T	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	silent	c.918	p.F306	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	tier1	-	-	12	0	0.00	19	7	26.92
OCIAD1	0	genome.wustl.edu	37	4	48859371	48859372	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	48859371	48859372	-	A	INS	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	frame_shift_ins	c.689_690	p.E233fs	1.000:0.300	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180	tier1			54	0	0.00	24	20	45.45
OR6K6	0	genome.wustl.edu	37	1	158725436	158725437	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	158725436	158725437	-	T	INS	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	frame_shift_ins	c.831_832	p.G279fs	0.009:0.920	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	tier1			85	0	0.00	88	20	18.52
OR8H1	0	genome.wustl.edu	37	11	56058416	56058416	+	Silent	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	56058416	56058416	G	T	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.123	p.G41	0.086	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693	tier1	-	-	60	0	0.00	44	11	20.00
OVGP1	0	genome.wustl.edu	37	1	111968031	111968031	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	111968031	111968031	G	A	SNP	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	silent	c.291	p.I97	0.978	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465	tier1	-	-	101	0	0.00	71	32	31.07
PCDH18	0	genome.wustl.edu	37	4	138452077	138452077	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	138452077	138452077	G	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1166	p.S389Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				36	0	0.00	34	2	5.56
PCDHB16	0	genome.wustl.edu	37	5	140562523	140562523	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	140562523	140562523	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.389	p.S130F	0.984	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				22	0	0.00	21	3	12.50
PDCD6IP	0	genome.wustl.edu	37	3	33870378	33870378	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	33870378	33870378	A	G	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	missense	c.766	p.I256V	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	tier1	-	-	46	0	0.00	45	14	23.73
PDS5A	0	genome.wustl.edu	37	4	39915248	39915248	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	39915248	39915248	C	T	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	nonsense	c.975	p.W325*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	tier1	-	-	29	0	0.00	17	6	26.09
PIGC	0	genome.wustl.edu	37	1	172411232	172411232	+	Silent	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	172411232	172411232	T	C	SNP	PIGC	ENST00000258324	human	ensembl	74_37	-1	known	silent	c.531	p.L177	0.997	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	-	no_errors	PIGC	HGNC	ENSG00000135845	tier1	-	-	31	0	0.00	23	12	34.29
PPP1R17	0	genome.wustl.edu	37	7	31732094	31732094	+	Silent	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	31732094	31732094	A	T	SNP	PPP1R17	ENST00000342032	human	ensembl	74_37	+1	known	silent	c.39	p.S13	0.997	NULL	NULL	-	no_errors	PPP1R17	HGNC	ENSG00000106341	tier1	-	-	81	0	0.00	70	30	30.00
PRDX6	0	genome.wustl.edu	37	1	173454551	173454551	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	173454551	173454551	A	G	SNP	PRDX6	ENST00000340385	human	ensembl	74_37	+1	known	missense	c.304	p.I102V	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX6	HGNC	ENSG00000117592	tier1	-	-	75	0	0.00	47	32	40.51
PSMA1	0	genome.wustl.edu	37	11	14526711	14526711	+	RNA	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	14526711	14526711	T	C	SNP	PSMA1	ENST00000524606	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMA1	HGNC	ENSG00000129084	tier1	-	-	29	0	0.00	18	22	55.00
PTK2	0	genome.wustl.edu	37	8	141754888	141754888	+	RNA	DEL	G	G	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	141754888	141754888	G	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398	tier1			21	0	0.00	18	2	10.00
PTPN14	0	genome.wustl.edu	37	1	214542917	214542918	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	214542917	214542918	-	A	INS	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	frame_shift_ins	c.3154_3153	p.A1051fs	1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	tier1			73	0	0.00	65	16	19.75
PXMP2	0	genome.wustl.edu	37	12	133277913	133277913	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	133277913	133277913	G	T	SNP	PXMP2	ENST00000317479	human	ensembl	74_37	+1	known	missense	c.477	p.W159C	1.000	pfam_Mpv17_PMP22	pfam_Mpv17_PMP22	-	no_errors	PXMP2	HGNC	ENSG00000176894	tier1	-	-	51	0	0.00	51	14	21.54
RAB13	0	genome.wustl.edu	37	1	153955990	153955990	+	RNA	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	153955990	153955990	T	C	SNP	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	tier1	-	-	85	0	0.00	66	16	19.51
RALGAPA1	0	genome.wustl.edu	37	14	36211602	36211603	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	14	36211602	36211603	-	A	INS	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	frame_shift_ins	c.1421_1420	p.S474fs	0.091:0.077	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	tier1			21	0	0.00	21	5	19.23
RANBP2	0	genome.wustl.edu	37	2	109347782	109347782	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	109347782	109347782	C	T	SNP	RANBP2	ENST00000425282	human	ensembl	74_37	+1	known	nonsense	c.145	p.Q49*	1.000	NULL	NULL	-	no_errors	RANBP2	HGNC	ENSG00000153201	tier1	-	-	191	0	0.00	217	38	14.90
RBM33	0	genome.wustl.edu	37	7	155532574	155532576	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	7	155532574	155532576	CAC	0	DEL	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	in_frame_del	c.1903_1905	p.H638in_frame_del	0.994:0.987:0.985	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				11	0	0.00	4	2	33.33
RC3H2	0	genome.wustl.edu	37	9	125639797	125639797	+	Silent	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	9	125639797	125639797	T	C	SNP	RC3H2	ENST00000357244	human	ensembl	74_37	-1	known	silent	c.1278	p.P426	0.962	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586	tier1	-	-	28	0	0.00	28	25	46.30
RNF5	0	genome.wustl.edu	37	6	32147865	32147865	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	32147865	32147865	C	T	SNP	RNF5	ENST00000427134	human	ensembl	74_37	+1	known	missense	c.407	p.T136I	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF5	HGNC	ENSG00000204308				13	0	0.00	33	2	5.71
ROCK1	0	genome.wustl.edu	37	18	18559913	18559913	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	18559913	18559913	T	G	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.2612	p.N871T	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	tier1	-	-	51	0	0.00	49	18	26.87
RTL1	0	genome.wustl.edu	37	14	101348319	101348319	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	14	101348319	101348319	C	T	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.2807	p.R936H	1.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				39	0	0.00	26	3	10.34
RYR1	0	genome.wustl.edu	37	19	39075726	39075726	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	39075726	39075726	G	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.14790	p.L4930F	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				46	0	0.00	50	3	5.66
SCLT1	0	genome.wustl.edu	37	4	129809878	129809878	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	129809878	129809878	G	T	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	missense	c.1960	p.R654S	0.997	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				38	0	0.00	36	2	5.26
SDCCAG3	0	genome.wustl.edu	37	9	139303480	139303480	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	9	139303480	139303480	G	A	SNP	SDCCAG3	ENST00000357365	human	ensembl	74_37	-1	known	missense	c.260	p.P87L	0.202	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689	tier1	-	-	37	0	0.00	17	5	22.73
SEL1L2	0	genome.wustl.edu	37	20	13829998	13829998	+	RNA	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	20	13829998	13829998	T	C	SNP	SEL1L2	ENST00000482196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SEL1L2	HGNC	ENSG00000101251	tier1	-	-	30	0	0.00	37	6	13.95
SENP7	0	genome.wustl.edu	37	3	101085489	101085489	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	101085489	101085489	A	G	SNP	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	missense	c.1103	p.L368P	0.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468	tier1	-	-	67	0	0.00	38	18	32.14
SIAH1	0	genome.wustl.edu	37	16	48396037	48396037	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	48396037	48396037	C	T	SNP	SIAH1	ENST00000356721	human	ensembl	74_37	-1	known	silent	c.396	p.A132	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_SIAH	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH1	HGNC	ENSG00000196470	tier1	-	-	59	0	0.00	63	20	24.10
SIGLEC5	0	genome.wustl.edu	37	19	52133162	52133162	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	52133162	52133162	G	A	SNP	SIGLEC5	ENST00000570106	human	ensembl	74_37	-1	known	silent	c.345	p.S115	0.046	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	tier1	-	-	19	0	0.00	7	6	46.15
SKIV2L2	0	genome.wustl.edu	37	5	54637600	54637600	+	Splice_Site	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	54637600	54637600	G	T	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	splice_site	c.781+1	e7+1	1.000	-	-	-	no_errors	SKIV2L2	HGNC	ENSG00000039123	tier1	-	-	63	0	0.00	64	4	5.88
SLC12A3	0	genome.wustl.edu	37	16	56924229	56924229	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	56924229	56924229	C	T	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	missense	c.2329	p.R777W	0.980	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	tier1	-	-	126	0	0.00	66	42	38.89
SLC18A2	0	genome.wustl.edu	37	10	119027194	119027195	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	10	119027194	119027195	-	A	INS	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	frame_shift_ins	c.1133_1134	p.N380fs	1.000:0.993	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	tier1			56	0	0.00	40	16	28.57
SLC2A4RG	0	genome.wustl.edu	37	20	62374233	62374233	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	20	62374233	62374233	A	T	SNP	SLC2A4RG	ENST00000266077	human	ensembl	74_37	+1	known	nonsense	c.1054	p.K352*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SLC2A4RG	HGNC	ENSG00000125520	tier1	-	-	27	0	0.00	35	8	18.60
SLC35E4	0	genome.wustl.edu	37	22	31042745	31042745	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	22	31042745	31042745	C	T	SNP	SLC35E4	ENST00000343605	human	ensembl	74_37	+1	known	silent	c.780	p.L260	1.000	pfam_Tpt_PEP_trans_dom,pfam_DMT,pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_DMT,pfam_UAA	-	no_errors	SLC35E4	HGNC	ENSG00000100036	tier1	-	-	71	0	0.00	46	18	28.12
SLC44A5	0	genome.wustl.edu	37	1	75684355	75684355	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	75684355	75684355	T	A	SNP	SLC44A5	ENST00000370855	human	ensembl	74_37	-1	known	missense	c.1349	p.H450L	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968				20	0	0.00	18	2	10.00
SLC7A2	0	genome.wustl.edu	37	8	17412103	17412103	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	17412103	17412103	A	G	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	missense	c.1210	p.I404V	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989	tier1	-	-	63	0	0.00	32	47	59.49
SLC9A1	0	genome.wustl.edu	37	1	27432219	27432219	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	27432219	27432219	C	T	SNP	SLC9A1	ENST00000374086	human	ensembl	74_37	-1	known	missense	c.1642	p.A548T	0.073	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	tier1	-	-	27	0	0.00	23	4	14.81
SLCO1C1	0	genome.wustl.edu	37	12	20858911	20858911	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	20858911	20858911	C	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	missense	c.300	p.S100R	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155	tier1	-	-	52	0	0.00	38	14	26.92
SNTB2	0	genome.wustl.edu	37	16	69304146	69304146	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	16	69304146	69304146	C	T	SNP	SNTB2	ENST00000336278	human	ensembl	74_37	+1	known	missense	c.1106	p.A369V	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB2	HGNC	ENSG00000168807	tier1	-	-	54	0	0.00	62	4	6.06
STAC	0	genome.wustl.edu	37	3	36534710	36534710	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	36534710	36534710	G	T	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.755	p.R252L	0.998	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681	tier1	-	-	48	0	0.00	20	23	53.49
SYCP2	0	genome.wustl.edu	37	20	58495530	58495530	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	20	58495530	58495530	C	T	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.181	p.E61K	0.998	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	tier1	-	-	29	0	0.00	22	20	47.62
SYNJ1	0	genome.wustl.edu	37	21	34038867	34038867	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	21	34038867	34038867	G	A	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.1945	p.L649F	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	tier1	-	-	32	0	0.00	14	16	53.33
SYTL4	0	genome.wustl.edu	37	X	99941718	99941718	+	Silent	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	X	99941718	99941718	G	T	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	silent	c.1251	p.I417	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	tier1	-	-	51	0	0.00	52	4	7.14
TBCK	0	genome.wustl.edu	37	4	106967751	106967751	+	Silent	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	106967751	106967751	G	T	SNP	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	silent	c.2658	p.L886	1.000	smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				33	0	0.00	42	3	6.67
TCHH	0	genome.wustl.edu	37	1	152082711	152082711	+	Silent	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	152082711	152082711	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.2982	p.E994	0.004	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	58	0	0.00	57	13	18.57
TFPT	0	genome.wustl.edu	37	19	54617837	54617837	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	54617837	54617837	G	T	SNP	TFPT	ENST00000391759	human	ensembl	74_37	-1	known	nonsense	c.267	p.C89*	1.000	NULL	NULL	-	no_errors	TFPT	HGNC	ENSG00000105619	tier1	-	-	47	0	0.00	36	4	10.00
TMCC1	0	genome.wustl.edu	37	3	129370576	129370578	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	3	129370576	129370578	CTG	-	DEL	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	in_frame_del	c.1710_1708	p.Q570in_frame_del	1.000:1.000:1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	tier1			26	0	0.00	26	3	10.34
TMEM132C	0	genome.wustl.edu	37	12	128899509	128899509	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	128899509	128899509	G	A	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	silent	c.318	p.K106	0.750	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	38	0	0.00	34	13	27.66
TMEM33	0	genome.wustl.edu	37	4	41946898	41946898	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	4	41946898	41946898	G	T	SNP	TMEM33	ENST00000325094	human	ensembl	74_37	+1	known	missense	c.485	p.C162F	1.000	pfam_UPF0121	pfam_UPF0121	-	no_errors	TMEM33	HGNC	ENSG00000109133	tier1	-	-	50	0	0.00	41	4	8.89
TMTC2	0	genome.wustl.edu	37	12	83289683	83289683	+	Silent	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	12	83289683	83289683	A	G	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	silent	c.741	p.G247	0.993	pfam_DUF1736	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	tier1	-	-	18	0	0.00	24	13	35.14
TOP1MT	0	genome.wustl.edu	37	8	144400203	144400203	+	Silent	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	8	144400203	144400203	G	C	SNP	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	silent	c.1200	p.L400	1.000	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428	tier1	-	-	59	0	0.00	41	43	50.59
TP53	0	genome.wustl.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	17	7579358	7579358	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.329	p.R110L	0.004	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs11540654	-	261	0	0.00	142	168	54.19
TRIP4	0	genome.wustl.edu	37	15	64701892	64701892	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	64701892	64701892	G	A	SNP	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	1.000	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				38	0	0.00	37	2	5.13
TRNAU1AP	0	genome.wustl.edu	37	1	28897783	28897783	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	28897783	28897783	A	G	SNP	TRNAU1AP	ENST00000373830	human	ensembl	74_37	+1	known	missense	c.626	p.Y209C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	tier1	-	-	32	0	0.00	34	19	35.85
TROVE2	0	genome.wustl.edu	37	1	193053997	193053997	+	RNA	DEL	A	A	-			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	193053997	193053997	A	-	DEL	TROVE2	ENST00000460715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747	tier1			15	0	0.00	13	2	13.33
TRPM7	0	genome.wustl.edu	37	15	50867083	50867083	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	15	50867083	50867083	T	C	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.4985	p.Y1662C	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	tier1	-	-	26	0	0.00	19	17	47.22
TTN	0	genome.wustl.edu	37	2	179640737	179640737	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	2	179640737	179640737	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5854	p.H1952N	0.586	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	49	0	0.00	60	4	6.25
UBE2V1	0	genome.wustl.edu	37	20	48698866	48698866	+	RNA	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	20	48698866	48698866	C	T	SNP	UBE2V1	ENST00000396059	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	UBE2V1	HGNC	ENSG00000244687	tier1	-	-	30	0	0.00	34	11	24.44
USH2A	0	genome.wustl.edu	37	1	216258050	216258050	+	Silent	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	216258050	216258050	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.5157	p.F1719	1.000	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	30	0	0.00	26	10	27.78
USP14	0	genome.wustl.edu	37	18	180329	180329	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	180329	180329	G	T	SNP	USP14	ENST00000261601	human	ensembl	74_37	+1	known	missense	c.394	p.A132S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557	tier1	-	-	48	0	0.00	64	4	5.88
VTA1	0	genome.wustl.edu	37	6	142510589	142510589	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	142510589	142510589	A	T	SNP	VTA1	ENST00000367630	human	ensembl	74_37	+1	known	missense	c.438	p.R146S	0.989	NULL	NULL	-	no_errors	VTA1	HGNC	ENSG00000009844	tier1	-	-	46	0	0.00	37	26	41.27
VTCN1	0	genome.wustl.edu	37	1	117699294	117699294	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	117699294	117699294	C	T	SNP	VTCN1	ENST00000359008	human	ensembl	74_37	-1	known	missense	c.356	p.R119Q	0.937	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VTCN1	HGNC	ENSG00000134258	tier1	-	-	47	0	0.00	47	9	16.07
VTN	0	genome.wustl.edu	37	17	26691418	26691418	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	17	26691418	26691418	G	T	SNP	VTN	ENST00000431468	human	ensembl	74_37	-1	known	missense	c.523	p.P175T	0.369	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	VTN	HGNC	ENSG00000109072	tier1	-	-	37	0	0.00	19	22	53.66
WDR36	0	genome.wustl.edu	37	5	110434486	110434486	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	110434486	110434486	A	G	SNP	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	missense	c.526	p.I176V	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987	tier1	-	-	13	0	0.00	6	8	57.14
XPNPEP3	0	genome.wustl.edu	37	22	41277988	41277988	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	22	41277988	41277988	C	A	SNP	XPNPEP3	ENST00000357137	human	ensembl	74_37	+1	known	missense	c.396	p.S132R	1.000	pfam_Aminopep_P_N	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236	tier1	-	-	42	0	0.00	58	5	7.94
ZBTB16	0	genome.wustl.edu	37	11	113935103	113935103	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	11	113935103	113935103	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	0.763	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				20	0	0.00	13	2	13.33
ZCCHC2	0	genome.wustl.edu	37	18	60241388	60241388	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	60241388	60241388	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	74_37	+1	known	nonsense	c.2074	p.Q692*	0.202	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	tier1	-	-	49	0	0.00	32	4	11.11
ZNF326	0	genome.wustl.edu	37	1	90493112	90493112	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	1	90493112	90493112	A	G	SNP	ZNF326	ENST00000340281	human	ensembl	74_37	+1	known	missense	c.1601	p.N534S	0.003	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664	tier1	-	-	30	0	0.00	21	11	34.38
ZNF354A	0	genome.wustl.edu	37	5	178139089	178139089	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	5	178139089	178139089	T	C	SNP	ZNF354A	ENST00000335815	human	ensembl	74_37	-1	known	missense	c.1790	p.Y597C	0.922	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131	tier1	-	-	28	0	0.00	15	22	57.89
ZNF404	0	genome.wustl.edu	37	19	44378184	44378185	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	44378184	44378185	-	T	INS	ZNF404	ENST00000587539	human	ensembl	74_37	-1	known	frame_shift_ins	c.182_181	p.R61fs	0.000:0.004	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF404	HGNC	ENSG00000176222	tier1			20	0	0.00	9	9	50.00
ZNF410	0	genome.wustl.edu	37	14	74371780	74371780	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	14	74371780	74371780	C	T	SNP	ZNF410	ENST00000555044	human	ensembl	74_37	+1	known	missense	c.907	p.H303Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF410	HGNC	ENSG00000119725	tier1	-	-	34	0	0.00	26	6	18.75
ZNF519	0	genome.wustl.edu	37	18	14105961	14105961	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	18	14105961	14105961	G	C	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	missense	c.578	p.S193C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	tier1	-	-	21	0	0.00	16	13	44.83
ZNF780B	0	genome.wustl.edu	37	19	40542336	40542336	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	40542336	40542336	T	C	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.430	p.I144V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000	tier1	-	-	73	0	0.00	55	33	37.50
ZNF816	0	genome.wustl.edu	37	19	53454471	53454471	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	53454471	53454471	G	C	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	missense	c.557	p.A186G	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				36	0	0.00	45	4	8.16
ZNF880	0	genome.wustl.edu	37	19	52877708	52877708	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	52877708	52877708	G	T	SNP	ZNF880	ENST00000597976	human	ensembl	74_37	+1	putative	missense	c.296	p.G99V	0.001	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	tier1	-	-	14	0	0.00	9	7	43.75
ZNF99	0	genome.wustl.edu	37	19	22941211	22941211	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	19	22941211	22941211	C	A	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.1227	p.K409N	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	-	-	60	0	0.00	46	7	13.21
ZNRD1-AS1	0	genome.wustl.edu	37	6	30026425	30026425	+	RNA	SNP	A	A	C			TCGA-LN-A4A6-01A-11D-A27G-09	TCGA-LN-A4A6-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce18b729-6af2-4371-8304-69367a65a0ba	a5d81bfd-d31b-4946-9784-ef26c8d85ee9	6	30026425	30026425	A	C	SNP	ZNRD1-AS1	ENST00000422224	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZNRD1-AS1	HGNC	ENSG00000204623				12	0	0.00	9	4	30.77
