Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
A2M	0	genome.wustl.edu	37	12	9254052	9254052	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	9254052	9254052	G	C	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.1485	p.F495L	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	tier1	-	-	22	0	0.00	15	11	42.31
ABCA13	0	genome.wustl.edu	37	7	48391999	48391999	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	48391999	48391999	A	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.10603	p.I3535L	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	32	0	0.00	10	22	68.75
ABCA7	0	genome.wustl.edu	37	19	1044587	1044587	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	1044587	1044587	G	C	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	missense	c.1059	p.Q353H	0.006	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687	tier1	-	-	90	0	0.00	55	27	32.93
ACAN	0	genome.wustl.edu	37	15	89400157	89400157	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	89400157	89400157	G	C	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.4341	p.E1447D	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	tier1	rs201505307	-	79	0	0.00	51	16	23.88
ACTRT3	0	genome.wustl.edu	37	3	169486006	169486006	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	169486006	169486006	T	C	SNP	ACTRT3	ENST00000330368	human	ensembl	74_37	-1	known	silent	c.333	p.P111	0.875	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT3	HGNC	ENSG00000184378	tier1	-	-	23	0	0.00	40	18	31.03
ADAD2	0	genome.wustl.edu	37	16	84228699	84228699	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	84228699	84228699	G	A	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	missense	c.848	p.R283H	1.000	smart_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955	tier1	-	-	99	0	0.00	100	16	13.79
ADAM20	0	genome.wustl.edu	37	14	70990362	70990362	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	70990362	70990362	C	A	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	missense	c.1263	p.K421N	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007	tier1	-	-	51	0	0.00	21	57	73.08
AGK	0	genome.wustl.edu	37	7	141301071	141301071	+	Silent	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	141301071	141301071	T	A	SNP	AGK	ENST00000355413	human	ensembl	74_37	+1	known	silent	c.288	p.T96	0.293	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530	tier1	-	-	29	0	0.00	39	14	26.42
AHSA2	0	genome.wustl.edu	37	2	61412994	61412994	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	61412994	61412994	A	G	SNP	AHSA2	ENST00000410073	human	ensembl	74_37	+1	novel	silent	c.213	p.L71	0.000	NULL	NULL	-	no_errors	AHSA2	HGNC	ENSG00000173209	tier1	-	-	63	0	0.00	12	30	69.77
AIM1	0	genome.wustl.edu	37	6	106999729	106999729	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	106999729	106999729	G	C	SNP	AIM1	ENST00000369066	human	ensembl	74_37	+1	known	missense	c.4091	p.W1364S	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	tier1	-	-	43	0	0.00	18	10	35.71
AKAP13	0	genome.wustl.edu	37	15	86269664	86269664	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	86269664	86269664	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.6781	p.D2261N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	tier1	-	-	49	0	0.00	32	23	41.82
ANKEF1	0	genome.wustl.edu	37	20	10030832	10030832	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	10030832	10030832	G	C	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	missense	c.1615	p.D539H	0.953	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623	tier1	-	-	50	0	0.00	37	7	15.91
AOX1	0	genome.wustl.edu	37	2	201457904	201457904	+	Silent	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	201457904	201457904	G	C	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	silent	c.81	p.L27	0.771	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	tier1	-	-	101	0	0.00	71	45	38.79
APP	0	genome.wustl.edu	37	21	27462296	27462296	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	21	27462296	27462296	C	A	SNP	APP	ENST00000346798	human	ensembl	74_37	-1	known	missense	c.318	p.K106N	1.000	pfam_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_heparin-bd,smart_Amyloid_glyco_extra	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192	tier1	-	-	96	0	0.00	28	69	71.13
ARAP2	0	genome.wustl.edu	37	4	36130237	36130237	+	Silent	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	36130237	36130237	C	G	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.3558	p.T1186	0.001	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	52	0	0.00	23	28	54.90
ARHGAP23	0	genome.wustl.edu	37	17	36633860	36633860	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	36633860	36633860	C	T	SNP	ARHGAP23	ENST00000431231	human	ensembl	74_37	+1	known	missense	c.2159	p.A720V	0.877	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_PDZ,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP23	HGNC	ENSG00000225485	tier1	-	-	54	0	0.00	30	22	42.31
ASXL2	0	genome.wustl.edu	37	2	25972870	25972870	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	25972870	25972870	C	G	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.1555	p.E519Q	0.848	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	tier1	-	-	77	0	0.00	53	25	32.05
ATP13A3	0	genome.wustl.edu	37	3	194147849	194147850	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	194147849	194147850	0	A	INS	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	frame_shift_ins	c.3080_3079	p.W1027fs	1.000:1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				37	0	0.00	55	7	11.29
ATP1A2	0	genome.wustl.edu	37	1	160093831	160093831	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	160093831	160093831	G	A	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	silent	c.480	p.K160	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625	tier1	-	-	100	0	0.00	61	51	45.54
ATP2B4	0	genome.wustl.edu	37	1	203696810	203696810	+	RNA	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	203696810	203696810	C	T	SNP	ATP2B4	ENST00000466407	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	-	-	40	0	0.00	25	24	48.98
ATXN7L1	0	genome.wustl.edu	37	7	105254708	105254708	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	105254708	105254708	C	T	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	silent	c.2073	p.A691	0.137	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1	-	-	40	0	0.00	42	15	26.32
BAI3	0	genome.wustl.edu	37	6	69640512	69640512	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	69640512	69640512	A	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.819	p.K273N	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	tier1	-	-	29	0	0.00	18	17	48.57
BEND5	0	genome.wustl.edu	37	1	49227056	49227056	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	49227056	49227056	C	A	SNP	BEND5	ENST00000371833	human	ensembl	74_37	-1	known	nonsense	c.313	p.E105*	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373	tier1	-	-	87	0	0.00	79	23	22.55
BMP15	0	genome.wustl.edu	37	X	50654013	50654013	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	50654013	50654013	C	G	SNP	BMP15	ENST00000252677	human	ensembl	74_37	+1	known	nonsense	c.230	p.S77*	0.006	NULL	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	tier1	-	-	18	0	0.00	20	8	28.57
BRD8	0	genome.wustl.edu	37	5	137498825	137498825	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	137498825	137498825	G	C	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	nonsense	c.2081	p.S694*	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	tier1	-	-	66	0	0.00	56	32	36.36
C16orf96	0	genome.wustl.edu	37	16	4625340	4625340	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	4625340	4625340	G	C	SNP	C16orf96	ENST00000444310	human	ensembl	74_37	+1	known	missense	c.859	p.E287Q	0.000	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	tier1	-	-	46	0	0.00	46	13	22.03
C19orf54	0	genome.wustl.edu	37	19	41247442	41247442	+	RNA	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	41247442	41247442	C	T	SNP	C19orf54	ENST00000594163	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	C19orf54	HGNC	ENSG00000188493	tier1	-	-	11	0	0.00	7	5	41.67
C1orf195	0	genome.wustl.edu	37	1	15495205	15495205	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	15495205	15495205	T	A	SNP	C1orf195	ENST00000376005	human	ensembl	74_37	-1	known	missense	c.167	p.H56L	0.000	NULL	NULL	-	no_errors	C1orf195	HGNC	ENSG00000204464	tier1	-	-	31	0	0.00	26	10	27.78
C21orf88	0	genome.wustl.edu	37	21	40978250	40978250	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	21	40978250	40978250	C	G	SNP	C21orf88	ENST00000329618	human	ensembl	74_37	-1	putative	missense	c.177	p.K59N	0.000	NULL	NULL	-	no_errors	C21orf88	HGNC	ENSG00000184809	tier1	-	-	25	0	0.00	30	9	23.08
C3orf20	0	genome.wustl.edu	37	3	14746055	14746055	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	14746055	14746055	C	G	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.1090	p.Q364E	0.049	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	tier1	-	-	107	0	0.00	60	29	32.58
C5orf60	0	genome.wustl.edu	37	5	179070016	179070016	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	179070016	179070016	C	T	SNP	C5orf60	ENST00000448248	human	ensembl	74_37	-1	known	silent	c.537	p.P179	0.000	NULL	NULL	-	no_errors	C5orf60	HGNC	ENSG00000204661	tier1	-	-	108	0	0.00	66	35	34.65
C8A	0	genome.wustl.edu	37	1	57378148	57378148	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	57378148	57378148	C	A	SNP	C8A	ENST00000361249	human	ensembl	74_37	+1	known	missense	c.1453	p.R485S	0.000	pfam_MACPF,smart_MACPF,prints_MAC_perforin	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131	tier1	-	-	40	0	0.00	50	16	24.24
CAPRIN1	0	genome.wustl.edu	37	11	34118131	34118131	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	34118131	34118131	A	G	SNP	CAPRIN1	ENST00000341394	human	ensembl	74_37	+1	known	missense	c.1811	p.Y604C	1.000	pfam_Caprin-1_C	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	tier1	-	-	41	0	0.00	26	24	48.00
CARS	0	genome.wustl.edu	37	11	3050660	3050660	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	3050660	3050660	T	A	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.815	p.E272V	0.984	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619	tier1	-	-	28	0	0.00	11	29	72.50
CASP5	0	genome.wustl.edu	37	11	104878040	104878041	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	104878040	104878041	-	T	INS	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_ins	c.242_241	p.T81fs	0.000:0.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	tier1			28	0	0.00	20	4	16.67
CCDC168	0	genome.wustl.edu	37	13	103384753	103384753	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	13	103384753	103384753	C	G	SNP	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	missense	c.4407	p.M1469I	0.174	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	tier1	-	-	77	0	0.00	53	34	39.08
CDAN1	0	genome.wustl.edu	37	15	43029216	43029216	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	43029216	43029216	A	C	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	missense	c.85	p.S29A	0.982	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	tier1	-	-	68	0	0.00	22	40	64.52
CEACAM21	0	genome.wustl.edu	37	19	42082640	42082640	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	42082640	42082640	C	T	SNP	CEACAM21	ENST00000401445	human	ensembl	74_37	+1	known	missense	c.14	p.S5L	0.557	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM21	HGNC	ENSG00000007129	tier1	-	-	74	0	0.00	52	25	32.47
CGREF1	0	genome.wustl.edu	37	2	27324150	27324150	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	27324150	27324150	C	A	SNP	CGREF1	ENST00000312734	human	ensembl	74_37	-1	known	nonsense	c.949	p.E317*	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CGREF1	HGNC	ENSG00000138028	tier1	-	-	58	0	0.00	47	15	24.19
CHL1	0	genome.wustl.edu	37	3	401982	401982	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	401982	401982	G	A	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	missense	c.1181	p.G394D	0.186	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121	tier1	-	-	58	0	0.00	57	4	6.56
CHST11	0	genome.wustl.edu	37	12	104995745	104995745	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	104995745	104995745	G	T	SNP	CHST11	ENST00000303694	human	ensembl	74_37	+1	known	silent	c.180	p.L60	1.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	tier1	-	-	44	0	0.00	31	16	34.04
CIC	0	genome.wustl.edu	37	19	42796614	42796614	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	42796614	42796614	C	T	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	silent	c.3171	p.L1057	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432	tier1	-	-	18	0	0.00	17	6	26.09
COG2	0	genome.wustl.edu	37	1	230798959	230798959	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	230798959	230798959	A	-	DEL	COG2	ENST00000366669	human	ensembl	74_37	+1	known	frame_shift_del	c.373	p.K127fs	0.935	pfam_COG_su2_N	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775	tier1			40	0	0.00	32	2	5.88
COL11A2	0	genome.wustl.edu	37	6	33147584	33147584	+	Splice_Site	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	33147584	33147584	T	C	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	splice_site	c.1360-2	e13-2	0.998	-	-	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	50	0	0.00	34	13	27.66
COL6A5	0	genome.wustl.edu	37	3	130098549	130098549	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	130098549	130098549	A	C	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.956	p.D319A	0.819	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	tier1	-	-	35	0	0.00	36	8	18.18
CPZ	0	genome.wustl.edu	37	4	8602970	8602970	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	8602970	8602970	T	G	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.242	p.L81R	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625	tier1	-	-	125	0	0.00	64	41	39.05
CROCCP2	0	genome.wustl.edu	37	1	16945182	16945184	+	RNA	DEL	AAT	AAT	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	16945182	16945184	AAT	-	DEL	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016:0.018:0.018	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1			9	0	0.00	5	3	37.50
CUX2	0	genome.wustl.edu	37	12	111748077	111748077	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	111748077	111748077	C	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.1491	p.F497	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	tier1	-	-	13	0	0.00	5	12	70.59
CYTH2	0	genome.wustl.edu	37	19	48976633	48976633	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	48976633	48976633	C	T	SNP	CYTH2	ENST00000427476	human	ensembl	74_37	+1	known	silent	c.432	p.L144	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH2	HGNC	ENSG00000105443	tier1	-	-	57	0	0.00	31	12	27.91
DEFB107B	0	genome.wustl.edu	37	8	7366735	7366735	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	7366735	7366735	A	G	SNP	DEFB107B	ENST00000355602	human	ensembl	74_37	+1	known	missense	c.203	p.K68R	0.000	NULL	NULL	-	no_errors	DEFB107B	HGNC	ENSG00000198129	tier1	-	-	19	0	0.00	5	3	37.50
DEFB108B	0	genome.wustl.edu	37	11	71544281	71544281	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	71544281	71544281	C	G	SNP	DEFB108B	ENST00000328698	human	ensembl	74_37	+1	known	missense	c.36	p.F12L	0.484	NULL	NULL	-	no_errors	DEFB108B	HGNC	ENSG00000184276	tier1	-	-	61	0	0.00	30	15	33.33
DEFB113	0	genome.wustl.edu	37	6	49937287	49937287	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	49937287	49937287	G	T	SNP	DEFB113	ENST00000398718	human	ensembl	74_37	-1	known	missense	c.52	p.P18T	1.000	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642				49	0	0.00	38	2	5.00
DEFB123	0	genome.wustl.edu	37	20	30037842	30037842	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	30037842	30037842	A	G	SNP	DEFB123	ENST00000376309	human	ensembl	74_37	+1	known	silent	c.69	p.Q23	0.278	NULL	NULL	-	no_errors	DEFB123	HGNC	ENSG00000180424	tier1	-	-	51	0	0.00	48	18	27.27
DNAH3	0	genome.wustl.edu	37	16	21152626	21152626	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	21152626	21152626	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.516	p.S172	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	tier1	-	-	74	0	0.00	52	4	7.14
DNAH9	0	genome.wustl.edu	37	17	11659960	11659960	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	11659960	11659960	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.6814	p.R2272G	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	tier1	-	-	48	0	0.00	19	34	64.15
DST	0	genome.wustl.edu	37	6	56472397	56472397	+	Silent	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	56472397	56472397	G	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.6930	p.L2310	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	57	0	0.00	33	21	38.89
DZIP1L	0	genome.wustl.edu	37	3	137822805	137822805	+	Silent	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	137822805	137822805	G	C	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	silent	c.9	p.S3	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163	tier1	-	-	44	0	0.00	55	13	18.84
EEA1	0	genome.wustl.edu	37	12	93169819	93169819	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	93169819	93169819	A	C	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.4204	p.C1402G	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	31	0	0.00	40	14	25.93
EHD1	0	genome.wustl.edu	37	11	64622896	64622896	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	64622896	64622896	G	C	SNP	EHD1	ENST00000320631	human	ensembl	74_37	-1	known	missense	c.978	p.S326R	1.000	superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	tier1	-	-	38	0	0.00	25	8	24.24
EIF4H	0	genome.wustl.edu	37	7	73588738	73588738	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	73588738	73588738	G	C	SNP	EIF4H	ENST00000265753	human	ensembl	74_37	+1	known	missense	c.25	p.D9H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682	tier1	-	-	53	0	0.00	44	14	24.14
ENSG00000212670	0	genome.wustl.edu	37	1	54570299	54570299	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	54570299	54570299	C	T	SNP	ENSG00000212670	ENST00000391366	human	ensembl	74_37	+1	novel	silent	c.159	p.L53	0.021	NULL	NULL	-	no_errors	AL161915.1	Clone_based_ensembl_gene	ENSG00000212670	tier1	-	-	29	0	0.00	33	11	25.00
ENSG00000221726	0	genome.wustl.edu	37	20	7677574	7677574	+	RNA	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	7677574	7677574	C	G	SNP	ENSG00000221726	ENST00000408799	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AL031653.1	Clone_based_ensembl_gene	ENSG00000221726	tier1	-	-	45	0	0.00	12	21	63.64
ENSG00000223579	0	genome.wustl.edu	37	22	20640127	20640127	+	RNA	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	20640127	20640127	C	G	SNP	ENSG00000223579	ENST00000577456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.053	-	-	-	no_errors	AC011718.2	Clone_based_vega_gene	ENSG00000223579	tier1	-	-	55	0	0.00	14	32	69.57
ENSG00000224897	0	genome.wustl.edu	37	7	124782801	124782801	+	RNA	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	124782801	124782801	T	G	SNP	ENSG00000224897	ENST00000449642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.096	-	-	-	no_errors	RP11-3B12.1	Clone_based_vega_gene	ENSG00000224897	tier1	-	-	8	0	0.00	6	5	45.45
ENSG00000227082	0	genome.wustl.edu	37	1	121138853	121138853	+	RNA	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	121138853	121138853	G	A	SNP	ENSG00000227082	ENST00000417218	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.951	-	-	-	no_errors	AL592494.5	Clone_based_vega_gene	ENSG00000227082	tier1	rs184767318	-	10	0	0.00	9	4	30.77
ENSG00000232671	0	genome.wustl.edu	37	1	151254324	151254324	+	RNA	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	151254324	151254324	C	T	SNP	ENSG00000232671	ENST00000494138	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-126K1.2	Clone_based_vega_gene	ENSG00000232671	tier1	-	-	30	0	0.00	21	8	27.59
ENSG00000269957	0	genome.wustl.edu	37	9	24545981	24545981	+	RNA	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	24545981	24545981	T	A	SNP	ENSG00000269957	ENST00000602851	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-20A20.2	Clone_based_vega_gene	ENSG00000269957	tier1	-	-	23	0	0.00	8	15	65.22
EPB41L5	0	genome.wustl.edu	37	2	120925515	120925515	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	120925515	120925515	A	G	SNP	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	silent	c.2067	p.G689	0.002	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109	tier1	-	-	92	0	0.00	64	35	35.35
EPRS	0	genome.wustl.edu	37	1	220154793	220154793	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	220154793	220154793	T	C	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.3380	p.Y1127C	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Pro-tRNA-ligase_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628	tier1	-	-	70	0	0.00	45	17	27.42
ERAP1	0	genome.wustl.edu	37	5	96132929	96132929	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	96132929	96132929	G	T	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.747	p.F249L	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307	tier1	-	-	15	0	0.00	13	12	48.00
EXOC6	0	genome.wustl.edu	37	10	94694131	94694131	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	94694131	94694131	G	A	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	missense	c.1132	p.D378N	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	tier1	-	-	31	0	0.00	22	8	26.67
EXOC7	0	genome.wustl.edu	37	17	74077223	74077223	+	RNA	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	74077223	74077223	C	A	SNP	EXOC7	ENST00000591724	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXOC7	HGNC	ENSG00000182473	tier1	-	-	24	0	0.00	7	21	75.00
FAM155A	0	genome.wustl.edu	37	13	108518718	108518718	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	13	108518718	108518718	T	C	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.227	p.Q76R	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	tier1	-	-	32	0	0.00	33	5	13.16
FAM86DP	0	genome.wustl.edu	37	3	75475771	75475771	+	RNA	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	75475771	75475771	T	A	SNP	FAM86DP	ENST00000491583	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.187	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026	tier1	-	-	205	0	0.00	45	141	75.81
FANCC	0	genome.wustl.edu	37	9	97869387	97869387	+	Silent	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	97869387	97869387	A	T	SNP	FANCC	ENST00000289081	human	ensembl	74_37	-1	known	silent	c.1494	p.A498	0.912	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169	tier1	-	-	94	0	0.00	92	40	30.30
FAT1	0	genome.wustl.edu	37	4	187524844	187524844	+	Silent	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	187524844	187524844	G	C	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.10836	p.L3612	0.981	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	34	0	0.00	38	19	32.76
FBXL13	0	genome.wustl.edu	37	7	102453968	102453968	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	102453968	102453968	G	C	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	missense	c.2029	p.Q677E	0.000	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040	tier1	-	-	165	0	0.00	137	52	27.51
FBXO41	0	genome.wustl.edu	37	2	73491122	73491122	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	73491122	73491122	C	G	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2049	p.L683F	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013	tier1	-	-	65	0	0.00	44	33	42.86
FBXW4	0	genome.wustl.edu	37	10	103386126	103386126	+	RNA	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	103386126	103386126	A	C	SNP	FBXW4	ENST00000470093	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FBXW4	HGNC	ENSG00000107829	tier1	-	-	61	0	0.00	15	47	75.81
FBXW5	0	genome.wustl.edu	37	9	139837916	139837916	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	139837916	139837916	G	A	SNP	FBXW5	ENST00000325285	human	ensembl	74_37	-1	known	missense	c.236	p.T79M	0.000	superfamily_Quinoprot_gluc/sorb_DH,superfamily_F-box_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_Quinoprot_gluc/sorb_DH,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW5	HGNC	ENSG00000159069	tier1	-	-	65	0	0.00	53	22	29.33
FCRL1	0	genome.wustl.edu	37	1	157772422	157772422	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	157772422	157772422	G	C	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	missense	c.352	p.Q118E	0.016	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534	tier1	-	-	33	0	0.00	24	19	44.19
FCRL6	0	genome.wustl.edu	37	1	159772228	159772228	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	159772228	159772228	C	T	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.14	p.T5M	0.002	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036	tier1	-	-	90	0	0.00	57	33	36.67
FIGN	0	genome.wustl.edu	37	2	164466828	164466828	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	164466828	164466828	G	T	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1514	p.P505Q	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	tier1	-	-	64	0	0.00	35	22	38.60
FLJ46361	0	genome.wustl.edu	37	10	124554869	124554869	+	RNA	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	124554869	124554869	T	G	SNP	FLJ46361	ENST00000439464	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.215	-	-	-	no_errors	RP11-318C4.2	Clone_based_vega_gene	ENSG00000176584	tier1	-	-	25	0	0.00	10	27	72.97
FOXD2	0	genome.wustl.edu	37	1	47904390	47904390	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	47904390	47904390	C	T	SNP	FOXD2	ENST00000334793	human	ensembl	74_37	+1	known	missense	c.583	p.P195S	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD2	HGNC	ENSG00000186564	tier1	-	-	138	0	0.00	116	34	22.67
GGH	0	genome.wustl.edu	37	8	63948274	63948274	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	63948274	63948274	A	G	SNP	GGH	ENST00000260118	human	ensembl	74_37	-1	known	silent	c.165	p.Y55	1.000	pfam_Peptidase_C26	pfam_Peptidase_C26,pfam_GATASE	-	no_errors	GGH	HGNC	ENSG00000137563	tier1	-	-	25	0	0.00	24	31	56.36
GGNBP2	0	genome.wustl.edu	37	17	34916662	34916662	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	34916662	34916662	A	T	SNP	GGNBP2	ENST00000304718	human	ensembl	74_37	+1	known	nonsense	c.478	p.K160*	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	tier1	-	-	65	0	0.00	13	38	74.51
GGNBP2	0	genome.wustl.edu	37	17	34916664	34916664	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	34916664	34916664	G	T	SNP	GGNBP2	ENST00000304718	human	ensembl	74_37	+1	known	missense	c.480	p.K160N	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	tier1	-	-	63	0	0.00	13	38	74.51
GH1	0	genome.wustl.edu	37	17	61994789	61994789	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	61994789	61994789	G	A	SNP	GH1	ENST00000323322	human	ensembl	74_37	-1	known	silent	c.534	p.N178	0.562	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH1	HGNC	ENSG00000259384	tier1	-	-	330	0	0.00	74	287	79.50
GHSR	0	genome.wustl.edu	37	3	172163075	172163076	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	172163075	172163076	-	T	INS	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	frame_shift_ins	c.977_976	p.M326fs	1.000:1.000	pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853	tier1			53	0	0.00	52	28	35.00
GJD2	0	genome.wustl.edu	37	15	35044811	35044811	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	35044811	35044811	G	T	SNP	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	silent	c.834	p.R278	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				60	0	0.00	56	3	5.08
GLI3	0	genome.wustl.edu	37	7	42017206	42017206	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	42017206	42017206	G	C	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	nonsense	c.1763	p.S588*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	tier1	-	-	168	0	0.00	142	51	26.42
GPR83	0	genome.wustl.edu	37	11	94134350	94134350	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	94134350	94134350	C	A	SNP	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	missense	c.64	p.G22C	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901	tier1	-	-	17	0	0.00	3	11	78.57
GPRC6A	0	genome.wustl.edu	37	6	117113916	117113916	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	117113916	117113916	T	G	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.2170	p.I724L	0.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	tier1	-	-	38	0	0.00	21	13	38.24
GRAMD4	0	genome.wustl.edu	37	22	47022732	47022732	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	47022732	47022732	T	C	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	silent	c.36	p.G12	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	tier1	-	-	48	0	0.00	25	13	34.21
GRAMD4	0	genome.wustl.edu	37	22	47072525	47072525	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	47072525	47072525	C	G	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	nonsense	c.1592	p.S531*	0.780	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	tier1	-	-	74	0	0.00	77	15	16.30
GRIP1	0	genome.wustl.edu	37	12	66839162	66839162	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	66839162	66839162	G	T	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.1481	p.T494K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974	tier1	-	-	38	0	0.00	50	18	26.47
GSTT2	0	genome.wustl.edu	37	22	24325166	24325166	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	24325166	24325166	G	T	SNP	GSTT2	ENST00000215780	human	ensembl	74_37	+1	known	silent	c.456	p.G152	0.504	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	GSTT2	HGNC	ENSG00000099984				45	0	0.00	49	4	7.27
GSTT2B	0	genome.wustl.edu	37	22	24300541	24300541	+	Silent	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	24300541	24300541	C	A	SNP	GSTT2B	ENST00000290765	human	ensembl	74_37	-1	known	silent	c.456	p.G152	0.489	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	GSTT2B	HGNC	ENSG00000133433	tier1	-	-	63	0	0.00	32	25	43.86
GTF2H1	0	genome.wustl.edu	37	11	18361125	18361125	+	Silent	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	18361125	18361125	C	G	SNP	GTF2H1	ENST00000265963	human	ensembl	74_37	+1	known	silent	c.528	p.P176	0.993	NULL	pfam_BSD,pfam_TFIIH_BTF_p62_N,smart_BSD,pfscan_BSD	-	no_errors	GTF2H1	HGNC	ENSG00000110768	tier1	-	-	84	0	0.00	42	19	31.15
H1FX	0	genome.wustl.edu	37	3	129034552	129034552	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	129034552	129034552	G	C	SNP	H1FX	ENST00000333762	human	ensembl	74_37	-1	known	missense	c.194	p.S65W	0.999	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	H1FX	HGNC	ENSG00000184897	tier1	-	-	33	0	0.00	38	8	17.39
HCAR2	0	genome.wustl.edu	37	12	123187417	123187417	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	123187417	123187417	C	G	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	missense	c.414	p.K138N	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782	tier1	-	-	75	0	0.00	51	38	42.70
HCLS1	0	genome.wustl.edu	37	3	121356020	121356020	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	121356020	121356020	C	T	SNP	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	tier1	-	-	96	0	0.00	86	59	40.69
HDHD1	0	genome.wustl.edu	37	X	6995436	6995436	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	6995436	6995436	G	A	SNP	HDHD1	ENST00000424830	human	ensembl	74_37	-1	known	missense	c.404	p.A135V	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA	-	no_errors	HDHD1	HGNC	ENSG00000130021	tier1	-	-	69	0	0.00	12	88	88.00
HECTD4	0	genome.wustl.edu	37	12	112607445	112607445	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	112607445	112607445	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.11554	p.E3852K	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	tier1	-	-	20	0	0.00	18	6	25.00
HELZ2	0	genome.wustl.edu	37	20	62194954	62194954	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	62194954	62194954	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.5221	p.L1741	0.996	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	-	-	31	0	0.00	11	10	47.62
HGF	0	genome.wustl.edu	37	7	81372751	81372751	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	81372751	81372751	G	A	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	silent	c.783	p.R261	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	tier1	-	-	46	0	0.00	45	41	47.67
HGF	0	genome.wustl.edu	37	7	81372752	81372752	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	81372752	81372752	C	A	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.782	p.R261L	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	tier1	-	-	46	0	0.00	45	41	47.67
HMCN2	0	genome.wustl.edu	37	9	133269907	133269907	+	RNA	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	133269907	133269907	C	A	SNP	HMCN2	ENST00000487727	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HMCN2	HGNC	ENSG00000148357	tier1	-	-	67	0	0.00	15	87	85.29
IFNL2	0	genome.wustl.edu	37	19	39759317	39759317	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	39759317	39759317	A	G	SNP	IFNL2	ENST00000331982	human	ensembl	74_37	+1	known	missense	c.11	p.D4G	0.102	NULL	NULL	-	no_errors	IFNL2	HGNC	ENSG00000183709	tier1	-	-	67	0	0.00	36	26	41.94
IFT80	0	genome.wustl.edu	37	3	160099401	160099401	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	160099401	160099401	A	G	SNP	IFT80	ENST00000326448	human	ensembl	74_37	-1	known	missense	c.149	p.I50T	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT80	HGNC	ENSG00000068885	tier1	-	-	45	0	0.00	70	11	13.58
IGSF9B	0	genome.wustl.edu	37	11	133790066	133790066	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	133790066	133790066	C	A	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.3554	p.R1185M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854	tier1	-	-	107	0	0.00	34	92	73.02
IL4R	0	genome.wustl.edu	37	16	27357918	27357918	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	27357918	27357918	G	C	SNP	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	missense	c.492	p.W164C	0.001	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238	tier1	-	-	74	0	0.00	36	18	33.33
ILDR2	0	genome.wustl.edu	37	1	166888577	166888577	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	166888577	166888577	G	T	SNP	ILDR2	ENST00000469934	human	ensembl	74_37	-1	putative	missense	c.1262	p.S421Y	0.007	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195	tier1	-	-	57	0	0.00	56	21	27.27
ILDR2	0	genome.wustl.edu	37	1	166888578	166888578	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	166888578	166888578	A	T	SNP	ILDR2	ENST00000469934	human	ensembl	74_37	-1	putative	missense	c.1261	p.S421T	0.008	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195	tier1	-	-	57	0	0.00	57	20	25.97
INADL	0	genome.wustl.edu	37	1	62253574	62253574	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	62253574	62253574	C	T	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.998	p.S333L	0.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	tier1	-	-	46	0	0.00	174	18	9.38
ING5	0	genome.wustl.edu	37	2	242662655	242662655	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	242662655	242662655	G	T	SNP	ING5	ENST00000313552	human	ensembl	74_37	+1	known	missense	c.649	p.V217L	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING5	HGNC	ENSG00000168395	tier1	-	-	155	0	0.00	31	105	77.21
INSL6	0	genome.wustl.edu	37	9	5185534	5185534	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	5185534	5185534	C	T	SNP	INSL6	ENST00000381641	human	ensembl	74_37	-1	known	silent	c.69	p.L23	0.009	superfamily_Insulin-like,pirsf_Insulin-like_pep_6	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,pirsf_Insulin-like_pep_6	-	no_errors	INSL6	HGNC	ENSG00000120210	tier1	-	-	29	0	0.00	20	8	28.57
ITGAV	0	genome.wustl.edu	37	2	187523819	187523819	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	187523819	187523819	C	T	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.1774	p.R592W	0.535	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	tier1	rs200949549	-	42	0	0.00	11	27	71.05
ITPR1	0	genome.wustl.edu	37	3	4687130	4687130	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	4687130	4687130	T	C	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	silent	c.684	p.D228	0.270	pfam_Ins145_P3_rcpt	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	tier1	-	-	72	0	0.00	46	18	28.12
JHDM1D	0	genome.wustl.edu	37	7	139791832	139791832	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	139791832	139791832	C	G	SNP	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	missense	c.2503	p.E835Q	0.994	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459	tier1	-	-	100	0	0.00	89	37	29.13
KAT6A	0	genome.wustl.edu	37	8	41806773	41806773	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	41806773	41806773	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	silent	c.1707	p.E569	1.000	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168	tier1	-	-	56	0	0.00	43	18	29.51
KCNN2	0	genome.wustl.edu	37	5	113740169	113740169	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	113740169	113740169	G	A	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.617	p.R206K	1.000	pfam_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	tier1	-	-	48	0	0.00	19	22	53.66
KDM5A	0	genome.wustl.edu	37	12	419007	419007	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	419007	419007	C	T	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.3340	p.E1114K	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	tier1	-	-	44	0	0.00	38	24	38.71
KIAA0196	0	genome.wustl.edu	37	8	126071704	126071704	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	126071704	126071704	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.1602	p.M534I	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				15	0	0.00	32	5	13.51
KIAA1239	0	genome.wustl.edu	37	4	37448096	37448096	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	37448096	37448096	T	C	SNP	KIAA1239	ENST00000309447	human	ensembl	74_37	+1	known	missense	c.4486	p.F1496L	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIAA1239	HGNC	ENSG00000174145	tier1	-	-	52	0	0.00	39	18	31.58
KLHDC1	0	genome.wustl.edu	37	14	50201373	50201373	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	50201373	50201373	G	A	SNP	KLHDC1	ENST00000359332	human	ensembl	74_37	+1	known	missense	c.890	p.R297K	1.000	superfamily_Gal_Oxase/kelch_b-propeller	pfam_Kelch_2,pfam_Kelch_1,superfamily_Gal_Oxase/kelch_b-propeller	-	no_errors	KLHDC1	HGNC	ENSG00000197776	tier1	-	-	13	0	0.00	19	7	26.92
KMT2B	0	genome.wustl.edu	37	19	36212661	36212661	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	36212661	36212661	C	G	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.2412	p.F804L	0.994	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333	tier1	-	-	42	0	0.00	18	13	41.94
KMT2C	0	genome.wustl.edu	37	7	151962290	151962290	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	151962290	151962290	C	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.1017	p.K339N	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	-	-	37	0	0.00	49	9	15.52
KRTAP5-1	0	genome.wustl.edu	37	11	1606198	1606198	+	Silent	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	1606198	1606198	T	G	SNP	KRTAP5-1	ENST00000382171	human	ensembl	74_37	-1	known	silent	c.282	p.G94	0.006	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869	tier1	-	-	58	0	0.00	38	21	35.59
KRTAP5-1	0	genome.wustl.edu	37	11	1606186	1606186	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	1606186	1606186	A	G	SNP	KRTAP5-1	ENST00000382171	human	ensembl	74_37	-1	known	silent	c.294	p.G98	1.000	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869				64	0	0.00	37	19	33.93
LIAS	0	genome.wustl.edu	37	4	39465225	39465225	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	39465225	39465225	G	T	SNP	LIAS	ENST00000261434	human	ensembl	74_37	+1	known	missense	c.393	p.M131I	1.000	smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897	tier1	-	-	45	0	0.00	35	22	38.60
LIG3	0	genome.wustl.edu	37	17	33318128	33318128	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	33318128	33318128	G	A	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	missense	c.1036	p.E346K	1.000	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156	tier1	-	-	36	0	0.00	25	8	24.24
LINC00304	0	genome.wustl.edu	37	16	89226472	89226472	+	RNA	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	89226472	89226472	G	T	SNP	LINC00304	ENST00000562248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00304	HGNC	ENSG00000180422	tier1	-	-	52	0	0.00	42	29	40.85
LOC101060604	0	genome.wustl.edu	37	16	21484504	21484504	+	RNA	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	21484504	21484504	C	A	SNP	LOC101060604	ENST00000522841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2547E10.2	Clone_based_vega_gene	ENSG00000180747	tier1	-	-	23	0	0.00	9	3	25.00
LRP12	0	genome.wustl.edu	37	8	105601196	105601198	+	RNA	DEL	CGA	CGA	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	CGA	CGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	105601196	105601198	CGA	-	DEL	LRP12	ENST00000520770	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.797:0.784:0.683	-	-	-	no_errors	LRP12	HGNC	ENSG00000147650	tier1			16	0	0.00	18	8	30.77
LRP1B	0	genome.wustl.edu	37	2	141128844	141128844	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	141128844	141128844	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.10779	p.T3593	0.985	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	30	0	0.00	21	12	36.36
LRRIQ1	0	genome.wustl.edu	37	12	85449856	85449856	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	85449856	85449856	G	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	nonsense	c.1285	p.E429*	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				45	0	0.00	33	3	8.33
LYG2	0	genome.wustl.edu	37	2	99858936	99858936	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	99858936	99858936	G	T	SNP	LYG2	ENST00000333017	human	ensembl	74_37	-1	known	nonsense	c.530	p.S177*	0.656	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674	tier1	-	-	45	0	0.00	16	20	55.56
MAATS1	0	genome.wustl.edu	37	3	119426309	119426309	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	119426309	119426309	C	G	SNP	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	missense	c.260	p.S87C	0.958	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833	tier1	-	-	29	0	0.00	55	10	15.38
MAGEB4	0	genome.wustl.edu	37	X	30260669	30260669	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	30260669	30260669	C	T	SNP	MAGEB4	ENST00000378982	human	ensembl	74_37	+1	known	silent	c.417	p.I139	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289	tier1	-	-	10	0	0.00	15	9	37.50
MAP10	0	genome.wustl.edu	37	1	232943711	232943711	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	232943711	232943711	C	A	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	missense	c.2942	p.S981Y	0.038	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916	tier1	-	-	35	0	0.00	23	8	25.81
MAST3	0	genome.wustl.edu	37	19	18234138	18234138	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	18234138	18234138	G	A	SNP	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	missense	c.424	p.E142K	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308	tier1	-	-	33	0	0.00	17	6	26.09
MDC1	0	genome.wustl.edu	37	6	30679848	30679848	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	30679848	30679848	C	G	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.1871	p.G624A	0.001	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	tier1	-	-	78	0	0.00	43	24	35.82
MEI1	0	genome.wustl.edu	37	22	42180391	42180391	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	42180391	42180391	A	T	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.3136	p.S1046C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	tier1	-	-	59	0	0.00	35	27	43.55
MGAT5	0	genome.wustl.edu	37	2	135028024	135028024	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	135028024	135028024	G	T	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	missense	c.309	p.K103N	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	tier1	-	-	69	0	0.00	52	4	7.14
MIR567	0	genome.wustl.edu	37	3	111831724	111831724	+	RNA	DEL	A	A	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	111831724	111831724	A	-	DEL	MIR567	ENST00000385205	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR567	HGNC	ENSG00000207940	tier1			35	0	0.00	49	5	9.26
MLLT3	0	genome.wustl.edu	37	9	20413721	20413721	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	20413721	20413721	C	T	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	missense	c.1123	p.D375N	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843	tier1	-	-	80	0	0.00	20	38	65.52
MPL	0	genome.wustl.edu	37	1	43804213	43804213	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	43804213	43804213	G	A	SNP	MPL	ENST00000372470	human	ensembl	74_37	+1	known	silent	c.213	p.R71	1.000	pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400	tier1	-	-	51	0	0.00	102	14	12.07
MUM1	0	genome.wustl.edu	37	19	1373090	1373090	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	1373090	1373090	C	G	SNP	MUM1	ENST00000344663	human	ensembl	74_37	+1	known	missense	c.2009	p.S670C	0.349	NULL	pfam_PWWP_dom	-	no_errors	MUM1	HGNC	ENSG00000160953	tier1	-	-	46	0	0.00	37	20	35.09
MYH6	0	genome.wustl.edu	37	14	23865995	23865995	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	23865995	23865995	C	T	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.2200	p.E734K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	tier1	-	-	86	0	0.00	49	24	32.88
MYO18B	0	genome.wustl.edu	37	22	26298604	26298604	+	Silent	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	26298604	26298604	C	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	silent	c.4848	p.A1616	0.996	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	tier1	-	-	70	0	0.00	59	25	29.76
MYO9B	0	genome.wustl.edu	37	19	17264866	17264866	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	17264866	17264866	A	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.1088	p.Y363F	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	tier1	-	-	35	0	0.00	22	21	48.84
MYOM2	0	genome.wustl.edu	37	8	2020437	2020437	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	2020437	2020437	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.806	p.S269W	0.000	pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448	tier1	-	-	85	0	0.00	52	42	44.68
NBPF20	0	genome.wustl.edu	37	1	148262266	148262266	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	148262266	148262266	T	C	SNP	NBPF20	ENST00000369202	human	ensembl	74_37	-1	known	silent	c.12150	p.P4050	0.223	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF20	HGNC	ENSG00000203832	tier1	-	-	391	0	0.00	366	78	17.57
NCAM1	0	genome.wustl.edu	37	11	113103878	113103878	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	113103878	113103878	C	A	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	missense	c.1502	p.S501Y	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294	tier1	-	-	50	0	0.00	20	16	44.44
NCAM1-AS1	0	genome.wustl.edu	37	11	113144552	113144552	+	RNA	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	113144552	113144552	G	A	SNP	NCAM1-AS1	ENST00000526229	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	NCAM1-AS1	HGNC	ENSG00000227487	tier1	-	-	24	0	0.00	7	21	75.00
NCOR1	0	genome.wustl.edu	37	17	16004598	16004598	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	16004598	16004598	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.2656	p.D886N	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	tier1	-	-	85	0	0.00	50	32	39.02
NDST4	0	genome.wustl.edu	37	4	115997552	115997552	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	115997552	115997552	G	A	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.641	p.P214L	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653	tier1	-	-	25	0	0.00	35	9	20.45
NHLRC2	0	genome.wustl.edu	37	10	115618346	115618346	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	115618346	115618346	A	G	SNP	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	missense	c.238	p.I80V	1.000	superfamily_Thioredoxin-like_fold	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865	tier1	-	-	69	0	0.00	41	27	39.71
NIN	0	genome.wustl.edu	37	14	51239778	51239778	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	51239778	51239778	G	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	silent	c.702	p.D234	0.995	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503	tier1	-	-	38	0	0.00	52	15	22.39
NLRP2	0	genome.wustl.edu	37	19	55501422	55501422	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	55501422	55501422	G	T	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.2399	p.W800L	0.067	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	tier1	-	-	30	0	0.00	19	9	32.14
NUDCD3	0	genome.wustl.edu	37	7	44530051	44530051	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	44530051	44530051	C	A	SNP	NUDCD3	ENST00000355451	human	ensembl	74_37	-1	known	missense	c.149	p.R50L	1.000	NULL	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD3	HGNC	ENSG00000015676	tier1	-	-	40	0	0.00	12	23	65.71
NUDT16	0	genome.wustl.edu	37	3	131102105	131102105	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	131102105	131102105	C	A	SNP	NUDT16	ENST00000521288	human	ensembl	74_37	+1	known	missense	c.508	p.Q170K	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT16	HGNC	ENSG00000198585	tier1	-	-	65	0	0.00	75	30	28.57
NUP88	0	genome.wustl.edu	37	17	5289551	5289551	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	5289551	5289551	T	C	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.2201	p.D734G	1.000	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	tier1	-	-	98	0	0.00	51	27	34.62
OBSCN	0	genome.wustl.edu	37	1	228487030	228487030	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	228487030	228487030	A	C	SNP	OBSCN	ENST00000366707	human	ensembl	74_37	+1	known	missense	c.3351	p.Q1117H	0.031	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	83	0	0.00	65	29	30.85
OMA1	0	genome.wustl.edu	37	1	59004831	59004831	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	59004831	59004831	T	C	SNP	OMA1	ENST00000371226	human	ensembl	74_37	-1	known	missense	c.136	p.I46V	0.000	NULL	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	tier1	-	-	41	0	0.00	289	75	20.55
OR14C36	0	genome.wustl.edu	37	1	248512820	248512820	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	248512820	248512820	C	T	SNP	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	silent	c.744	p.V248	0.119	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174	tier1	rs142764213	-	28	0	0.00	15	7	31.82
OR4N2	0	genome.wustl.edu	37	14	20296476	20296476	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	20296476	20296476	G	A	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	missense	c.869	p.R290H	0.519	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	tier1	-	-	114	0	0.00	72	58	44.62
OR6N2	0	genome.wustl.edu	37	1	158746611	158746611	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	158746611	158746611	C	T	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	missense	c.815	p.R272Q	0.761	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340	tier1	-	-	92	0	0.00	56	21	27.27
OSR2	0	genome.wustl.edu	37	8	99963089	99963089	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	99963089	99963089	G	C	SNP	OSR2	ENST00000523368	human	ensembl	74_37	+1	putative	missense	c.862	p.D288H	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	tier1	-	-	70	0	0.00	89	28	23.93
P2RX2	0	genome.wustl.edu	37	12	133197878	133197878	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	133197878	133197878	C	A	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.943	p.R315S	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848	tier1	-	-	54	0	0.00	38	27	41.54
PALM2	0	genome.wustl.edu	37	9	112705216	112705216	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	112705216	112705216	C	G	SNP	PALM2	ENST00000448454	human	ensembl	74_37	+1	known	missense	c.753	p.H251Q	0.004	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444	tier1	-	-	25	0	0.00	5	37	88.10
PAPSS2	0	genome.wustl.edu	37	10	89487163	89487163	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	89487163	89487163	G	A	SNP	PAPSS2	ENST00000456849	human	ensembl	74_37	+1	known	missense	c.1003	p.D335N	0.943	pfam_Sulfurylase_cat_dom,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	tier1	-	-	28	0	0.00	16	7	30.43
PARP1	0	genome.wustl.edu	37	1	226576388	226576388	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	226576388	226576388	T	A	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	missense	c.686	p.D229V	1.000	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799	tier1	-	-	28	0	0.00	18	12	40.00
PCDHA10	0	genome.wustl.edu	37	5	140237666	140237666	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	140237666	140237666	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.2033	p.S678L	0.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	tier1	-	-	91	0	0.00	46	22	32.35
PCDHA13	0	genome.wustl.edu	37	5	140261985	140261985	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	5	140261985	140261985	C	G	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.132	p.F44L	0.993	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	tier1	-	-	121	0	0.00	71	36	33.64
PCMT1	0	genome.wustl.edu	37	6	150123514	150123514	+	Nonstop_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	150123514	150123514	G	C	SNP	PCMT1	ENST00000367378	human	ensembl	74_37	+1	known	nonstop	c.857	p.*286S	1.000	NULL	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265	tier1	-	-	34	0	0.00	11	10	47.62
PDP1	0	genome.wustl.edu	37	8	94935557	94935557	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	94935557	94935557	A	G	SNP	PDP1	ENST00000396200	human	ensembl	74_37	+1	known	missense	c.1345	p.M449V	0.998	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP1	HGNC	ENSG00000164951	tier1	-	-	161	0	0.00	225	61	21.33
PIP5K1C	0	genome.wustl.edu	37	19	3656454	3656454	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	3656454	3656454	G	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	silent	c.570	p.V190	0.996	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	tier1	-	-	69	0	0.00	42	21	33.33
PKHD1L1	0	genome.wustl.edu	37	8	110376784	110376784	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	110376784	110376784	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.82	p.Q28K	0.962	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	76	0	0.00	97	20	17.09
PLA1A	0	genome.wustl.edu	37	3	119347680	119347680	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	119347680	119347680	G	A	SNP	PLA1A	ENST00000273371	human	ensembl	74_37	+1	known	silent	c.1254	p.K418	0.092	pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	tier1	-	-	45	0	0.00	47	26	35.62
PMM1	0	genome.wustl.edu	37	22	41980059	41980059	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	41980059	41980059	T	C	SNP	PMM1	ENST00000216259	human	ensembl	74_37	-1	known	silent	c.378	p.G126	0.433	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM1	HGNC	ENSG00000100417	tier1	-	-	37	0	0.00	31	10	24.39
PODXL	0	genome.wustl.edu	37	7	131195718	131195718	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	131195718	131195718	G	A	SNP	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	missense	c.581	p.P194L	0.000	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	tier1	-	-	176	0	0.00	171	31	15.35
PON2	0	genome.wustl.edu	37	7	95039233	95039233	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	95039233	95039233	G	C	SNP	PON2	ENST00000536183	human	ensembl	74_37	-1	known	missense	c.738	p.I246M	0.982	pfam_Arylesterase,pfam_SGL	pfam_Arylesterase,pfam_SGL,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON2	HGNC	ENSG00000105854	tier1	-	-	26	0	0.00	44	10	18.52
PPL	0	genome.wustl.edu	37	16	4942146	4942146	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	4942146	4942146	G	C	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.1719	p.F573L	0.175	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	tier1	-	-	56	0	0.00	47	20	29.85
PPP1R14D	0	genome.wustl.edu	37	15	41108162	41108162	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	41108162	41108162	C	T	SNP	PPP1R14D	ENST00000299174	human	ensembl	74_37	-1	known	missense	c.370	p.E124K	1.000	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14D	HGNC	ENSG00000166143	tier1	-	-	35	0	0.00	24	18	42.86
PPP4R1	0	genome.wustl.edu	37	18	9550118	9550118	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	9550118	9550118	C	G	SNP	PPP4R1	ENST00000400556	human	ensembl	74_37	-1	known	missense	c.2479	p.E827Q	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R1	HGNC	ENSG00000154845	tier1	-	-	91	0	0.00	55	21	27.27
PRAMENP	0	genome.wustl.edu	37	22	22345724	22345724	+	RNA	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	22345724	22345724	C	G	SNP	PRAMENP	ENST00000337471	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.283	-	-	-	no_errors	PRAMENP	HGNC	ENSG00000197549	tier1	-	-	27	0	0.00	23	10	30.30
PRKAG3	0	genome.wustl.edu	37	2	219695486	219695486	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	219695486	219695486	G	A	SNP	PRKAG3	ENST00000233944	human	ensembl	74_37	-1	known	missense	c.212	p.P71L	0.001	NULL	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG3	HGNC	ENSG00000115592	tier1	-	-	110	0	0.00	28	67	70.53
PRSS21	0	genome.wustl.edu	37	16	2871496	2871496	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	2871496	2871496	G	C	SNP	PRSS21	ENST00000005995	human	ensembl	74_37	+1	known	missense	c.835	p.E279Q	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS21	HGNC	ENSG00000007038	tier1	-	-	87	0	0.00	64	14	17.95
PRSS53	0	genome.wustl.edu	37	16	31098169	31098169	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	31098169	31098169	T	G	SNP	PRSS53	ENST00000280606	human	ensembl	74_37	-1	known	missense	c.293	p.Q98P	0.944	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	tier1	-	-	43	0	0.00	31	18	36.73
PRSS58	0	genome.wustl.edu	37	7	141952041	141952041	+	Nonstop_Mutation	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	141952041	141952041	T	A	SNP	PRSS58	ENST00000547058	human	ensembl	74_37	-1	known	nonstop	c.726	p.*242C	1.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS58	HGNC	ENSG00000258223	tier1	-	-	28	0	0.00	12	14	53.85
PRX	0	genome.wustl.edu	37	19	40904703	40904703	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	40904703	40904703	G	C	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.205	p.R69G	0.998	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				23	0	0.00	9	5	35.71
PTP4A3	0	genome.wustl.edu	37	8	142437153	142437153	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	142437153	142437153	G	T	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	missense	c.313	p.V105L	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489	tier1	-	-	197	0	0.00	112	175	60.98
PTPRZ1	0	genome.wustl.edu	37	7	121513382	121513383	+	RNA	INS	-	-	CA			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	121513382	121513383	-	CA	INS	PTPRZ1	ENST00000471837	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	tier1			9	0	0.00	9	4	30.77
PTRH1	0	genome.wustl.edu	37	9	130478320	130478320	+	RNA	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	130478320	130478320	G	C	SNP	PTRH1	ENST00000429848	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PTRH1	HGNC	ENSG00000187024	tier1	-	-	71	0	0.00	94	33	25.98
PVR	0	genome.wustl.edu	37	19	45150678	45150678	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	45150678	45150678	A	T	SNP	PVR	ENST00000425690	human	ensembl	74_37	+1	known	missense	c.263	p.E88V	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVR	HGNC	ENSG00000073008	tier1	-	-	62	0	0.00	52	15	22.39
PVRL3	0	genome.wustl.edu	37	3	110852704	110852704	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	110852704	110852704	G	A	SNP	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	missense	c.1292	p.R431K	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707	tier1	-	-	40	0	0.00	44	21	32.31
QARS	0	genome.wustl.edu	37	3	49133372	49133372	+	RNA	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	49133372	49133372	G	C	SNP	QARS	ENST00000475599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	QARS	HGNC	ENSG00000172053	tier1	-	-	49	0	0.00	40	12	23.08
QTRTD1	0	genome.wustl.edu	37	3	113801479	113801479	+	RNA	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	113801479	113801479	C	G	SNP	QTRTD1	ENST00000462869	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	QTRTD1	HGNC	ENSG00000151576	tier1	-	-	25	0	0.00	30	7	18.92
RABL2A	0	genome.wustl.edu	37	2	114399798	114399798	+	RNA	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	114399798	114399798	C	T	SNP	RABL2A	ENST00000478880	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RABL2A	HGNC	ENSG00000144134	tier1	-	-	25	0	0.00	22	11	33.33
RAET1E	0	genome.wustl.edu	37	6	150209742	150209742	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	150209742	150209742	G	A	SNP	RAET1E	ENST00000357183	human	ensembl	74_37	-1	known	silent	c.684	p.I228	0.008	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520	tier1	-	-	45	0	0.00	23	14	37.84
RBM24	0	genome.wustl.edu	37	6	17292855	17292855	+	RNA	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	17292855	17292855	C	G	SNP	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183	tier1	-	-	50	0	0.00	49	19	27.94
RDH16	0	genome.wustl.edu	37	12	57348715	57348715	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	57348715	57348715	C	A	SNP	RDH16	ENST00000398138	human	ensembl	74_37	-1	known	missense	c.547	p.V183L	0.034	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH16	HGNC	ENSG00000139547	tier1	-	-	26	0	0.00	17	13	43.33
REXO1L1	0	genome.wustl.edu	37	8	86574539	86574539	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	86574539	86574539	G	T	SNP	REXO1L1	ENST00000379010	human	ensembl	74_37	-1	putative	silent	c.1188	p.A396	0.982	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1L1	HGNC	ENSG00000205176	tier1	-	-	119	0	0.00	168	50	22.83
RGSL1	0	genome.wustl.edu	37	1	182517507	182517507	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	182517507	182517507	G	A	SNP	RGSL1	ENST00000294854	human	ensembl	74_37	+1	known	missense	c.2725	p.E909K	0.878	superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam	-	no_errors	RGSL1	HGNC	ENSG00000121446	tier1	-	-	30	0	0.00	27	16	37.21
RHOA	0	genome.wustl.edu	37	3	49405948	49405948	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	49405948	49405948	C	G	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.190	p.E64Q	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560	tier1	-	-	44	0	0.00	15	15	50.00
RIMS1	0	genome.wustl.edu	37	6	73043490	73043490	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	73043490	73043490	G	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4318	p.A1440S	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	tier1	-	-	70	0	0.00	37	24	39.34
RNF169	0	genome.wustl.edu	37	11	74546963	74546963	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	74546963	74546963	C	T	SNP	RNF169	ENST00000299563	human	ensembl	74_37	+1	known	nonsense	c.1315	p.Q439*	0.999	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	tier1	-	-	23	0	0.00	14	9	39.13
RPE65	0	genome.wustl.edu	37	1	68895504	68895504	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	68895504	68895504	C	G	SNP	RPE65	ENST00000262340	human	ensembl	74_37	-1	known	missense	c.1557	p.E519D	0.998	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	tier1	-	-	13	0	0.00	27	5	15.62
RPL34	0	genome.wustl.edu	37	4	109546356	109546356	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	109546356	109546356	G	C	SNP	RPL34	ENST00000394665	human	ensembl	74_37	+1	known	missense	c.342	p.Q114H	0.994	NULL	pfam_Ribosomal_L34Ae,prints_Ribosomal_L34Ae	-	no_errors	RPL34	HGNC	ENSG00000109475	tier1	rs1065701	-	44	0	0.00	30	8	21.05
SDHAP1	0	genome.wustl.edu	37	3	195711538	195711538	+	RNA	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	195711538	195711538	T	C	SNP	SDHAP1	ENST00000427841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485	tier1	-	-	227	0	0.00	234	58	19.73
SDK2	0	genome.wustl.edu	37	17	71334666	71334666	+	RNA	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	71334666	71334666	G	C	SNP	SDK2	ENST00000410094	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	97	0	0.00	86	30	25.86
SDR16C6P	0	genome.wustl.edu	37	8	57294613	57294613	+	RNA	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	57294613	57294613	A	T	SNP	SDR16C6P	ENST00000517787	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	SDR16C6P	HGNC	ENSG00000253542	tier1	-	-	23	0	0.00	40	12	23.08
SEPHS2	0	genome.wustl.edu	37	16	30456364	30456364	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	30456364	30456364	C	G	SNP	SEPHS2	ENST00000542752	human	ensembl	74_37	-1	known	missense	c.514	p.V172L	1.000	superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918	tier1	-	-	61	0	0.00	35	23	39.66
SERPINI2	0	genome.wustl.edu	37	3	167185064	167185064	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	167185064	167185064	A	C	SNP	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	missense	c.257	p.F86C	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204	tier1	-	-	41	0	0.00	39	17	30.36
SEZ6L	0	genome.wustl.edu	37	22	26773696	26773696	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	26773696	26773696	G	C	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.3000	p.Q1000H	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	tier1	-	-	59	0	0.00	57	8	12.31
SLC12A1	0	genome.wustl.edu	37	15	48577319	48577319	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	48577319	48577319	A	T	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.2502	p.L834F	0.989	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803	tier1	-	-	54	0	0.00	11	35	76.09
SLC5A3	0	genome.wustl.edu	37	21	35468056	35468056	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	21	35468056	35468056	C	G	SNP	SLC5A3	ENST00000381151	human	ensembl	74_37	+1	known	missense	c.559	p.L187V	0.962	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743	tier1	-	-	48	0	0.00	19	11	36.67
SLC6A10P	0	genome.wustl.edu	37	16	32888910	32888910	+	RNA	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	32888910	32888910	G	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	tier1	-	-	165	0	0.00	101	23	18.55
SNRPF	0	genome.wustl.edu	37	12	96259806	96259806	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	96259806	96259806	G	C	SNP	SNRPF	ENST00000266735	human	ensembl	74_37	+1	known	missense	c.218	p.R73T	1.000	superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP_SmF	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP_SmF	-	no_errors	SNRPF	HGNC	ENSG00000139343	tier1	-	-	62	0	0.00	34	45	56.96
SOAT1	0	genome.wustl.edu	37	1	179304721	179304721	+	Silent	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	179304721	179304721	A	G	SNP	SOAT1	ENST00000367619	human	ensembl	74_37	+1	known	silent	c.258	p.S86	0.048	NULL	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	tier1	-	-	40	0	0.00	20	15	42.86
SORCS1	0	genome.wustl.edu	37	10	108439039	108439039	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	108439039	108439039	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1715	p.S572L	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				16	0	0.00	13	3	18.75
SPECC1L	0	genome.wustl.edu	37	22	24807589	24807589	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	24807589	24807589	A	G	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.3121	p.N1041D	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014	tier1	-	-	45	0	0.00	32	22	40.74
SPOPL	0	genome.wustl.edu	37	2	139308489	139308489	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	139308489	139308489	C	A	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.217	p.P73T	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				39	0	0.00	38	2	5.00
SSX4	0	genome.wustl.edu	37	X	48243539	48243539	+	Silent	SNP	T	T	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	48243539	48243539	T	A	SNP	SSX4	ENST00000376886	human	ensembl	74_37	+1	known	silent	c.45	p.A15	0.000	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX4	HGNC	ENSG00000204645	tier1	-	-	12	0	0.00	5	8	61.54
ST18	0	genome.wustl.edu	37	8	53084980	53084980	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	53084980	53084980	T	C	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	silent	c.441	p.E147	0.963	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	tier1	-	-	40	0	0.00	41	24	36.36
STK25	0	genome.wustl.edu	37	2	242441214	242441214	+	RNA	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	242441214	242441214	C	A	SNP	STK25	ENST00000483603	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	STK25	HGNC	ENSG00000115694	tier1	-	-	10	0	0.00	1	13	92.86
STMN1	0	genome.wustl.edu	37	1	26228032	26228032	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	26228032	26228032	C	T	SNP	STMN1	ENST00000426559	human	ensembl	74_37	-1	known	missense	c.328	p.E110K	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN1	HGNC	ENSG00000117632	tier1	-	-	55	0	0.00	24	19	44.19
STXBP5L	0	genome.wustl.edu	37	3	120840538	120840538	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	120840538	120840538	G	C	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.656	p.R219T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087	tier1	-	-	53	0	0.00	67	16	19.28
SUPT20H	0	genome.wustl.edu	37	13	37618315	37618315	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	13	37618315	37618315	G	T	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	missense	c.296	p.S99Y	1.000	pfam_Spt20	pfam_Spt20	-	no_errors	SUPT20H	HGNC	ENSG00000102710				37	0	0.00	32	2	5.88
SYCP2L	0	genome.wustl.edu	37	6	10930703	10930703	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	10930703	10930703	C	A	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	nonsense	c.1589	p.S530*	0.070	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	tier1	-	-	24	0	0.00	24	7	22.58
SYNDIG1	0	genome.wustl.edu	37	20	24524206	24524206	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	24524206	24524206	A	G	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	missense	c.473	p.E158G	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463	tier1	-	-	11	0	0.00	23	7	23.33
SZT2	0	genome.wustl.edu	37	1	43902856	43902856	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	43902856	43902856	G	A	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.5878	p.E1960K	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198	tier1	-	-	42	0	0.00	94	19	16.81
TAB1	0	genome.wustl.edu	37	22	39824121	39824121	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	39824121	39824121	C	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	nonsense	c.1240	p.Q414*	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				27	0	0.00	32	3	8.57
TACC3	0	genome.wustl.edu	37	4	1732903	1732903	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	1732903	1732903	G	C	SNP	TACC3	ENST00000313288	human	ensembl	74_37	+1	known	missense	c.1466	p.R489T	0.000	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810	tier1	-	-	51	0	0.00	37	15	28.85
TACC3	0	genome.wustl.edu	37	4	1733001	1733001	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	1733001	1733001	G	C	SNP	TACC3	ENST00000313288	human	ensembl	74_37	+1	known	missense	c.1564	p.E522Q	0.117	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810	tier1	-	-	36	0	0.00	13	5	27.78
TAF2	0	genome.wustl.edu	37	8	120795769	120795769	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	120795769	120795769	T	C	SNP	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	missense	c.1964	p.Y655C	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313	tier1	-	-	33	0	0.00	28	9	24.32
TAF5	0	genome.wustl.edu	37	10	105127805	105127805	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	10	105127805	105127805	C	A	SNP	TAF5	ENST00000369839	human	ensembl	74_37	+1	known	missense	c.59	p.P20Q	1.000	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	tier1	-	-	20	0	0.00	10	28	73.68
TANGO6	0	genome.wustl.edu	37	16	68900993	68900993	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	68900993	68900993	T	C	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	silent	c.864	p.D288	0.261	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047	tier1	-	-	50	0	0.00	35	40	53.33
TEAD4	0	genome.wustl.edu	37	12	3104056	3104056	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	3104056	3104056	G	T	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	missense	c.124	p.V42L	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	tier1	-	-	93	0	0.00	18	45	71.43
TES	0	genome.wustl.edu	37	7	115889258	115889258	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	115889258	115889258	G	T	SNP	TES	ENST00000358204	human	ensembl	74_37	+1	known	missense	c.298	p.A100S	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TES	HGNC	ENSG00000135269	tier1	-	-	51	0	0.00	66	4	5.71
TEX11	0	genome.wustl.edu	37	X	69964046	69964046	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	69964046	69964046	A	G	SNP	TEX11	ENST00000344304	human	ensembl	74_37	-1	known	missense	c.761	p.M254T	0.676	pfam_Meiosis_specific_SPO22	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	tier1	-	-	34	0	0.00	12	36	75.00
TGFB2	0	genome.wustl.edu	37	1	218607722	218607722	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	218607722	218607722	G	T	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	missense	c.770	p.C257F	1.000	pirsf_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969	tier1	-	-	54	0	0.00	57	4	6.56
THPO	0	genome.wustl.edu	37	3	184090495	184090495	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	184090495	184090495	G	A	SNP	THPO	ENST00000204615	human	ensembl	74_37	-1	known	missense	c.868	p.P290S	0.005	NULL	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534	tier1	-	-	41	0	0.00	44	30	40.54
TICRR	0	genome.wustl.edu	37	15	90163009	90163009	+	Silent	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	90163009	90163009	T	C	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.3090	p.Y1030	0.345	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534	tier1	-	-	56	0	0.00	41	36	46.75
TIGD4	0	genome.wustl.edu	37	4	153691031	153691032	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	4	153691031	153691032	-	A	INS	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	frame_shift_ins	c.1126_1125	p.E375fs	1.000:0.998	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989	tier1			62	0	0.00	57	18	24.00
TIGD5	0	genome.wustl.edu	37	8	144680307	144680307	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	144680307	144680307	C	G	SNP	TIGD5	ENST00000504548	human	ensembl	74_37	+1	known	missense	c.234	p.C78W	1.000	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD5	HGNC	ENSG00000179886	tier1	-	-	9	0	0.00	11	5	31.25
TIGD7	0	genome.wustl.edu	37	16	3348998	3348998	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	3348998	3348998	G	A	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	silent	c.1617	p.F539	0.899	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993	tier1	-	-	47	0	0.00	26	36	58.06
TIMELESS	0	genome.wustl.edu	37	12	56827937	56827937	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	56827937	56827937	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.18	p.M6I	1.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	tier1	-	-	37	0	0.00	25	17	40.48
TKT	0	genome.wustl.edu	37	3	53264542	53264542	+	Silent	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	53264542	53264542	G	C	SNP	TKT	ENST00000423525	human	ensembl	74_37	-1	known	silent	c.1038	p.T346	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931	tier1	-	-	151	0	0.00	35	107	74.83
TLE6	0	genome.wustl.edu	37	19	2987362	2987362	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	2987362	2987362	C	T	SNP	TLE6	ENST00000246112	human	ensembl	74_37	+1	known	missense	c.550	p.P184S	0.252	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953	tier1	-	-	22	0	0.00	18	11	37.93
TLR4	0	genome.wustl.edu	37	9	120475807	120475807	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	120475807	120475807	C	A	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1401	p.F467L	0.049	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	tier1	-	-	38	0	0.00	10	41	80.39
TMEM132D	0	genome.wustl.edu	37	12	129559126	129559126	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	12	129559126	129559126	T	G	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.2594	p.K865T	0.001	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	tier1	-	-	149	0	0.00	104	25	19.38
TNFRSF11B	0	genome.wustl.edu	37	8	119945474	119945474	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	119945474	119945474	G	A	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	silent	c.96	p.D32	1.000	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11B	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	tier1	rs4876870	-	49	0	0.00	105	23	17.97
TOB1	0	genome.wustl.edu	37	17	48941282	48941282	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	48941282	48941282	C	G	SNP	TOB1	ENST00000268957	human	ensembl	74_37	-1	known	missense	c.97	p.E33Q	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB1	HGNC	ENSG00000141232	tier1	-	-	39	0	0.00	35	13	27.08
TP53	0	genome.wustl.edu	37	17	7578528	7578528	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	7578528	7578528	A	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.402	p.F134L	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	43	0	0.00	13	36	73.47
TPRG1	0	genome.wustl.edu	37	3	188933129	188933129	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	188933129	188933129	G	C	SNP	TPRG1	ENST00000345063	human	ensembl	74_37	+1	known	missense	c.259	p.E87Q	0.113	pfam_Inositol_phosphatase	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001	tier1	-	-	37	0	0.00	67	11	14.10
TPTEP1	0	genome.wustl.edu	37	22	17131536	17131537	+	RNA	INS	-	-	CTG			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	22	17131536	17131537	-	CTG	INS	TPTEP1	ENST00000426585	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999:0.999	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181	tier1			18	0	0.00	14	4	22.22
TRMT10C	0	genome.wustl.edu	37	3	101284019	101284019	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	101284019	101284019	T	C	SNP	TRMT10C	ENST00000309922	human	ensembl	74_37	+1	known	missense	c.394	p.Y132H	1.000	NULL	pfam_tRNA_m1G_MeTrfase	-	no_errors	TRMT10C	HGNC	ENSG00000174173	tier1	-	-	18	0	0.00	15	6	28.57
TRPC6	0	genome.wustl.edu	37	11	101323836	101323836	+	Silent	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	11	101323836	101323836	C	A	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	silent	c.2646	p.G882	1.000	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672	tier1	-	-	36	0	0.00	19	9	32.14
TTC16	0	genome.wustl.edu	37	9	130478440	130478440	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	130478440	130478440	G	A	SNP	TTC16	ENST00000373289	human	ensembl	74_37	+1	known	missense	c.16	p.E6K	0.003	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094	tier1	-	-	69	0	0.00	79	29	26.61
TTC7B	0	genome.wustl.edu	37	14	91110514	91110514	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	14	91110514	91110514	C	A	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.1629	p.Q543H	0.987	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	tier1	-	-	48	0	0.00	28	36	56.25
TTL	0	genome.wustl.edu	37	2	113286627	113286627	+	RNA	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	113286627	113286627	G	A	SNP	TTL	ENST00000460450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	TTL	HGNC	ENSG00000114999	tier1	-	-	39	0	0.00	30	6	16.67
UMPS	0	genome.wustl.edu	37	3	124459038	124459038	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	124459038	124459038	A	G	SNP	UMPS	ENST00000232607	human	ensembl	74_37	+1	known	missense	c.1150	p.R384G	0.000	pfam_OMPdeCOase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase	pfam_OMPdeCOase_dom,pfam_PRibTrfase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_dom	-	no_errors	UMPS	HGNC	ENSG00000114491	tier1	-	-	30	0	0.00	45	17	27.42
UPF3B	0	genome.wustl.edu	37	X	118979254	118979254	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	X	118979254	118979254	C	T	SNP	UPF3B	ENST00000276201	human	ensembl	74_37	-1	known	missense	c.376	p.E126K	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	tier1	-	-	27	0	0.00	11	13	54.17
URB2	0	genome.wustl.edu	37	1	229771466	229771466	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	229771466	229771466	A	G	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.1106	p.N369S	0.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	tier1	-	-	38	0	0.00	22	17	43.59
USP21	0	genome.wustl.edu	37	1	161133747	161133747	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	1	161133747	161133747	T	G	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.1194	p.C398W	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258	tier1	-	-	76	0	0.00	49	37	43.02
USP3	0	genome.wustl.edu	37	15	63866552	63866552	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	63866552	63866552	G	C	SNP	USP3	ENST00000380324	human	ensembl	74_37	+1	known	missense	c.1046	p.R349T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP3	HGNC	ENSG00000140455	tier1	-	-	29	0	0.00	32	10	23.81
USP31	0	genome.wustl.edu	37	16	23102050	23102050	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	23102050	23102050	G	T	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.1310	p.T437K	0.044	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				86	0	0.00	53	3	5.36
USP45	0	genome.wustl.edu	37	6	99894129	99894129	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	6	99894129	99894129	G	A	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	missense	c.1519	p.P507S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552	tier1	-	-	38	0	0.00	17	10	35.71
VCP	0	genome.wustl.edu	37	9	35067938	35067938	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	35067938	35067938	C	T	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	missense	c.252	p.M84I	1.000	pfam_CDC4_N-term_subdom,superfamily_Asp_de-COase-like_dom,tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280	tier1	-	-	54	0	0.00	46	22	32.35
VEPH1	0	genome.wustl.edu	37	3	157082201	157082201	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	3	157082201	157082201	G	T	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.1228	p.Q410K	1.000	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415	tier1	-	-	47	0	0.00	91	18	16.51
VPS13C	0	genome.wustl.edu	37	15	62214804	62214804	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	15	62214804	62214804	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.6767	p.T2256M	0.151	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				31	0	0.00	28	2	6.67
VPS36	0	genome.wustl.edu	37	13	53001132	53001132	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	13	53001132	53001132	C	T	SNP	VPS36	ENST00000378060	human	ensembl	74_37	-1	known	missense	c.631	p.E211K	1.000	pfam_EAP30	pfam_EAP30,pfam_VPS36_GLUE	-	no_errors	VPS36	HGNC	ENSG00000136100	tier1	-	-	86	0	0.00	50	38	43.18
WDR33	0	genome.wustl.edu	37	2	128471464	128471464	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	2	128471464	128471464	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.3001	p.D1001N	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	tier1	-	-	97	0	0.00	52	33	38.82
ZAN	0	genome.wustl.edu	37	7	100334441	100334441	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	100334441	100334441	A	C	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.263	p.Y88S	0.997	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	tier1	-	-	51	0	0.00	33	12	26.67
ZNF100	0	genome.wustl.edu	37	19	21909915	21909915	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	21909915	21909915	A	G	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.1199	p.F400S	0.843	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				55	0	0.00	34	8	19.05
ZNF341	0	genome.wustl.edu	37	20	32341071	32341071	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	20	32341071	32341071	C	T	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	nonsense	c.583	p.Q195*	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061	tier1	-	-	30	0	0.00	54	12	18.18
ZNF395	0	genome.wustl.edu	37	8	28206685	28206685	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	8	28206685	28206685	G	A	SNP	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	missense	c.1387	p.H463Y	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	tier1	-	-	27	0	0.00	13	15	53.57
ZNF467	0	genome.wustl.edu	37	7	149462695	149462695	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	7	149462695	149462695	G	A	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.896	p.P299L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	tier1	-	-	72	0	0.00	63	16	20.25
ZNF469	0	genome.wustl.edu	37	16	88495087	88495087	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	16	88495087	88495087	G	C	SNP	ZNF469	ENST00000437464	human	ensembl	74_37	+1	known	missense	c.1209	p.Q403H	0.957	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614	tier1	-	-	61	0	0.00	46	21	31.34
ZNF519	0	genome.wustl.edu	37	18	14105544	14105545	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105544	14105545	-	T	INS	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	frame_shift_ins	c.995_994	p.G332fs	0.000:0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	tier1			43	0	0.00	12	5	29.41
ZNF519	0	genome.wustl.edu	37	18	14105547	14105547	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105547	14105547	C	-	DEL	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	frame_shift_del	c.992	p.R331fs	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	tier1			45	0	0.00	11	5	31.25
ZNF519	0	genome.wustl.edu	37	18	14105583	14105583	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105583	14105583	G	-	DEL	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	frame_shift_del	c.956	p.P319fs	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	tier1			50	0	0.00	10	5	33.33
ZNF519	0	genome.wustl.edu	37	18	14105586	14105587	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105586	14105587	-	C	INS	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	frame_shift_ins	c.953_952	p.K318fs	0.998:1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	tier1			49	0	0.00	11	6	35.29
ZNF519	0	genome.wustl.edu	37	18	14105539	14105539	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105539	14105539	A	G	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	missense	c.1000	p.Y334H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				43	0	0.00	10	8	44.44
ZNF519	0	genome.wustl.edu	37	18	14105543	14105543	+	Silent	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105543	14105543	G	A	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	silent	c.996	p.G332	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				43	0	0.00	10	6	35.29
ZNF519	0	genome.wustl.edu	37	18	14105572	14105572	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105572	14105572	T	C	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	missense	c.967	p.K323E	0.198	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				47	0	0.00	7	6	46.15
ZNF519	0	genome.wustl.edu	37	18	14105576	14105576	+	Silent	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	18	14105576	14105576	C	T	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	silent	c.963	p.K321	0.072	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				50	0	0.00	6	7	53.85
ZNF534	0	genome.wustl.edu	37	19	52941164	52941164	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	52941164	52941164	A	C	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	missense	c.490	p.S164R	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633	tier1	-	-	12	0	0.00	10	4	28.57
ZNF579	0	genome.wustl.edu	37	19	56089494	56089494	+	Silent	SNP	G	G	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	56089494	56089494	G	T	SNP	ZNF579	ENST00000325421	human	ensembl	74_37	-1	known	silent	c.1512	p.L504	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF579	HGNC	ENSG00000218891				57	0	0.00	41	9	18.00
ZNF625	0	genome.wustl.edu	37	19	12256319	12256319	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	12256319	12256319	T	G	SNP	ZNF625	ENST00000439556	human	ensembl	74_37	-1	known	missense	c.912	p.E304D	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000257591	tier1	-	-	83	0	0.00	34	33	49.25
ZNF653	0	genome.wustl.edu	37	19	11598622	11598622	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	11598622	11598622	G	A	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.656	p.A219V	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914	tier1	-	-	24	0	0.00	20	12	37.50
ZNF653	0	genome.wustl.edu	37	19	11598670	11598670	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	11598670	11598670	G	A	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.608	p.S203F	0.027	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914				16	0	0.00	15	5	25.00
ZNF737	0	genome.wustl.edu	37	19	20727799	20727799	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	19	20727799	20727799	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.1210	p.E404K	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	tier1	-	-	41	0	0.00	30	7	18.92
ZNF750	0	genome.wustl.edu	37	17	80789643	80789643	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	17	80789643	80789643	C	-	DEL	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	frame_shift_del	c.688	p.A230fs	0.019	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579	tier1			79	0	0.00	30	66	68.75
ZNF883	0	genome.wustl.edu	37	9	115760042	115760042	+	RNA	SNP	T	T	C			TCGA-LN-A4A9-01A-11D-A28B-09	TCGA-LN-A4A9-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3312754b-57aa-47bc-80a3-611d5a6a0822	ea1b57ff-0f6b-4d15-bff4-aa31ed6452cd	9	115760042	115760042	T	C	SNP	ZNF883	ENST00000427548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623	tier1	-	-	39	0	0.00	18	40	68.97
