Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADAM28	0	genome.wustl.edu	37	8	24181426	24181426	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	24181426	24181426	C	T	SNP	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	missense	c.800	p.P267L	0.637	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	tier1	-	-	48	0	0.00	27	5	15.62
ALK	0	genome.wustl.edu	37	2	29416625	29416625	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	29416625	29416625	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.4328	p.P1443L	0.257	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	tier1	-	-	45	0	0.00	58	5	7.94
ALK	0	genome.wustl.edu	37	2	29416626	29416626	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	29416626	29416626	G	C	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.4327	p.P1443A	0.161	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	tier1	-	-	42	0	0.00	57	5	8.06
ANKRD30BP2	0	genome.wustl.edu	37	21	14417863	14417863	+	RNA	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	21	14417863	14417863	G	T	SNP	ANKRD30BP2	ENST00000507941	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309	tier1	rs9968011	-	8	0	0.00	4	6	60.00
ANKRD36	0	genome.wustl.edu	37	2	97830141	97830141	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	97830141	97830141	T	C	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.1466	p.V489A	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976	tier1	-	-	148	0	0.00	186	13	6.53
ANKS6	0	genome.wustl.edu	37	9	101542596	101542596	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	9	101542596	101542596	C	G	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.1243	p.A415P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138	tier1	-	-	60	0	0.00	64	6	8.57
ARF4	0	genome.wustl.edu	37	3	57563091	57563092	+	Frame_Shift_Ins	INS	-	-	CGAT			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	3	57563091	57563092	-	CGAT	INS	ARF4	ENST00000303436	human	ensembl	74_37	-1	known	frame_shift_ins	c.282_281	p.S94fs	1.000:1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF4	HGNC	ENSG00000168374	tier1			50	0	0.00	23	11	32.35
ARHGAP5	0	genome.wustl.edu	37	14	32561049	32561049	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	14	32561049	32561049	A	G	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	missense	c.1174	p.I392V	1.000	smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	tier1	-	-	21	0	0.00	26	11	29.73
ARRDC1	0	genome.wustl.edu	37	9	140508651	140508651	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	9	140508651	140508651	G	A	SNP	ARRDC1	ENST00000371421	human	ensembl	74_37	+1	known	silent	c.603	p.V201	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC1	HGNC	ENSG00000197070	tier1	-	-	41	0	0.00	23	55	70.51
ASPSCR1	0	genome.wustl.edu	37	17	79974398	79974398	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	79974398	79974398	C	T	SNP	ASPSCR1	ENST00000306729	human	ensembl	74_37	+1	known	missense	c.1682	p.P561L	0.009	NULL	pfam_TUG/UBX4,pfam_UBX,pfscan_UBX	-	no_errors	ASPSCR1	HGNC	ENSG00000169696	tier1	-	-	43	0	0.00	36	16	30.77
ATG2B	0	genome.wustl.edu	37	14	96752289	96752289	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	14	96752289	96752289	T	C	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.6040	p.T2014A	0.997	pfam_Autophagy-rel_C	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1	-	-	52	0	0.00	30	36	54.55
C21orf88	0	genome.wustl.edu	37	21	40969634	40969634	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	21	40969634	40969634	C	T	SNP	C21orf88	ENST00000380612	human	ensembl	74_37	-1	putative	silent	c.435	p.L145	0.000	NULL	NULL	-	no_errors	C21orf88	HGNC	ENSG00000184809	tier1	-	-	43	0	0.00	50	7	12.28
CA3	0	genome.wustl.edu	37	8	86357447	86357447	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	86357447	86357447	G	T	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	missense	c.507	p.K169N	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879	tier1	-	-	9	0	0.00	14	9	39.13
CDC5L	0	genome.wustl.edu	37	6	44394257	44394257	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	44394257	44394257	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	silent	c.1689	p.P563	0.998	pfam_DUF3351	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401	tier1	-	-	23	0	0.00	49	13	20.97
CDKAL1	0	genome.wustl.edu	37	6	21065322	21065322	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	21065322	21065322	C	T	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.1099	p.P367S	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	tier1	-	-	36	0	0.00	51	6	10.53
CNGA1	0	genome.wustl.edu	37	4	47938770	47938770	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	4	47938770	47938770	G	A	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.1948	p.L650F	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515	tier1	-	-	47	0	0.00	51	4	7.27
CTBP1-AS2	0	genome.wustl.edu	37	4	1245592	1245592	+	RNA	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	4	1245592	1245592	G	T	SNP	CTBP1-AS2	ENST00000578730	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTBP1-AS2	HGNC	ENSG00000196810	tier1	-	-	49	0	0.00	67	4	5.63
CTBP2	0	genome.wustl.edu	37	10	126678087	126678087	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	10	126678087	126678087	C	T	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	silent	c.2958	p.*986	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	tier1	rs111888382	-	77	0	0.00	92	6	6.12
CYSTM1	0	genome.wustl.edu	37	5	139622995	139622995	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	139622995	139622995	G	A	SNP	CYSTM1	ENST00000261811	human	ensembl	74_37	+1	known	silent	c.293	p.*98	1.000	NULL	NULL	-	no_errors	CYSTM1	HGNC	ENSG00000120306	tier1	-	-	33	0	0.00	22	18	45.00
DCHS1	0	genome.wustl.edu	37	11	6662744	6662744	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	11	6662744	6662744	C	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.101	p.G34V	0.981	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				48	0	0.00	48	5	9.43
DDX4	0	genome.wustl.edu	37	5	55110775	55110775	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	55110775	55110775	T	A	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	missense	c.1762	p.F588I	0.632	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670	tier1	-	-	63	0	0.00	45	34	43.04
DGKK	0	genome.wustl.edu	37	X	50163452	50163452	+	RNA	SNP	C	C	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	X	50163452	50163452	C	A	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	tier1	-	-	28	0	0.00	39	7	15.22
DUSP10	0	genome.wustl.edu	37	1	221875156	221875157	+	RNA	INS	-	-	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	221875156	221875157	-	A	INS	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507	tier1			25	0	0.00	27	4	12.90
EML3	0	genome.wustl.edu	37	11	62375370	62375371	+	RNA	INS	-	-	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	11	62375370	62375371	-	A	INS	EML3	ENST00000438258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	EML3	HGNC	ENSG00000149499	tier1			15	0	0.00	12	8	40.00
ENSG00000261093	0	genome.wustl.edu	37	16	2647916	2647916	+	RNA	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	16	2647916	2647916	A	T	SNP	ENSG00000261093	ENST00000562166	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-3126B10.1	Clone_based_vega_gene	ENSG00000261093	tier1	-	-	33	0	0.00	32	28	46.67
ENSG00000270726	0	genome.wustl.edu	37	X	155250722	155250722	+	RNA	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	X	155250722	155250722	T	C	SNP	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726	tier1	-	-	37	0	0.00	10	8	44.44
EPB41L1	0	genome.wustl.edu	37	20	34797649	34797649	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	34797649	34797649	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	silent	c.1908	p.F636	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367	tier1	-	-	39	0	0.00	26	21	44.68
FAM135B	0	genome.wustl.edu	37	8	139144969	139144969	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	139144969	139144969	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.4088	p.R1363Q	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	tier1	-	-	40	0	0.00	50	18	26.47
FAM170B	0	genome.wustl.edu	37	10	50339714	50339714	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	10	50339714	50339714	C	T	SNP	FAM170B	ENST00000311787	human	ensembl	74_37	-1	known	missense	c.796	p.E266K	0.000	NULL	NULL	-	no_errors	FAM170B	HGNC	ENSG00000172538	tier1	-	-	75	0	0.00	35	19	35.19
FAM179A	0	genome.wustl.edu	37	2	29247111	29247111	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	29247111	29247111	G	A	SNP	FAM179A	ENST00000379558	human	ensembl	74_37	+1	known	missense	c.1724	p.R575H	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	tier1	-	-	53	0	0.00	58	11	15.94
FLJ12825	0	genome.wustl.edu	37	12	54515536	54515536	+	RNA	DEL	C	C	-			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	12	54515536	54515536	C	-	DEL	FLJ12825	ENST00000515617	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-834C11.3	Clone_based_vega_gene	ENSG00000248265	tier1			23	0	0.00	11	4	26.67
FUT8	0	genome.wustl.edu	37	14	66190950	66190950	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	14	66190950	66190950	T	A	SNP	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	missense	c.1168	p.F390I	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170	tier1	-	-	44	0	0.00	35	9	20.45
GRM3	0	genome.wustl.edu	37	7	86468866	86468866	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	86468866	86468866	G	A	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.2036	p.R679K	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822	tier1	-	-	46	0	0.00	48	24	33.33
HCAR2	0	genome.wustl.edu	37	12	123187427	123187427	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	12	123187427	123187427	G	A	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	missense	c.404	p.A135V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782	tier1	-	-	81	0	0.00	138	46	25.00
HCN1	0	genome.wustl.edu	37	5	45645478	45645478	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	45645478	45645478	T	G	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.658	p.S220R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	tier1	-	-	55	0	0.00	83	6	6.74
HRH1	0	genome.wustl.edu	37	3	11300956	11300956	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	3	11300956	11300956	C	A	SNP	HRH1	ENST00000397056	human	ensembl	74_37	+1	known	missense	c.233	p.A78D	0.890	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H1_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH1	HGNC	ENSG00000196639	tier1	-	-	25	0	0.00	19	12	38.71
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				46	0	0.00	76	4	5.00
IRAK2	0	genome.wustl.edu	37	3	10255058	10255058	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	3	10255058	10255058	G	A	SNP	IRAK2	ENST00000256458	human	ensembl	74_37	+1	known	silent	c.696	p.K232	0.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070	tier1	-	-	33	0	0.00	16	25	60.98
KRTAP9-8	0	genome.wustl.edu	37	17	39394711	39394711	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	39394711	39394711	G	C	SNP	KRTAP9-8	ENST00000254072	human	ensembl	74_37	+1	known	missense	c.408	p.E136D	0.000	NULL	NULL	-	no_errors	KRTAP9-8	HGNC	ENSG00000187272				75	0	0.00	83	23	21.70
LINC00174	0	genome.wustl.edu	37	7	65842543	65842543	+	RNA	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	65842543	65842543	C	T	SNP	LINC00174	ENST00000421767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	LINC00174	HGNC	ENSG00000179406				13	0	0.00	22	2	8.33
LOC388813	0	genome.wustl.edu	37	21	16031090	16031090	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	21	16031090	16031090	C	G	SNP	LOC388813	ENST00000400562	human	ensembl	74_37	-1	putative	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	AF165138.7	Clone_based_vega_gene	ENSG00000243440	tier1	-	-	40	0	0.00	43	12	21.82
LZTS3	0	genome.wustl.edu	37	20	3147483	3147483	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	3147483	3147483	G	A	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	silent	c.327	p.T109	0.057	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899	tier1	-	-	78	0	0.00	63	25	28.41
MADCAM1	0	genome.wustl.edu	37	19	504758	504758	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	504758	504758	G	A	SNP	MADCAM1	ENST00000215637	human	ensembl	74_37	+1	known	silent	c.942	p.A314	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	MADCAM1	HGNC	ENSG00000099866	tier1	-	-	47	0	0.00	60	6	8.96
MAP2	0	genome.wustl.edu	37	2	210559468	210559468	+	Silent	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	210559468	210559468	A	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.2574	p.V858	0.004	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	tier1	-	-	52	0	0.00	45	5	10.00
MDC1	0	genome.wustl.edu	37	6	30680542	30680542	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	30680542	30680542	T	C	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.1177	p.K393E	0.012	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	tier1	-	-	52	0	0.00	71	7	8.97
MMP16	0	genome.wustl.edu	37	8	89180161	89180161	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	89180161	89180161	C	T	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.446	p.R149H	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103	tier1	-	-	68	0	0.00	64	28	30.43
MST1R	0	genome.wustl.edu	37	3	49933677	49933677	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	3	49933677	49933677	C	G	SNP	MST1R	ENST00000296474	human	ensembl	74_37	-1	known	missense	c.2600	p.S867T	0.008	pirsf_Tyr_kinase_HGF/MSP_rcpt,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	tier1	-	-	63	0	0.00	31	13	29.55
MTMR1	0	genome.wustl.edu	37	X	149898659	149898659	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	X	149898659	149898659	G	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	missense	c.634	p.A212T	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601	tier1	-	-	31	0	0.00	16	29	64.44
MTRF1L	0	genome.wustl.edu	37	6	153310937	153310937	+	RNA	DEL	A	A	-			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	153310937	153310937	A	-	DEL	MTRF1L	ENST00000461949	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.168	-	-	-	no_errors	MTRF1L	HGNC	ENSG00000112031	tier1			16	0	0.00	15	3	16.67
NEK5	0	genome.wustl.edu	37	13	52649950	52649950	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	13	52649950	52649950	A	T	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	missense	c.1741	p.F581I	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	tier1	-	-	37	0	0.00	43	15	25.86
NIPBL	0	genome.wustl.edu	37	5	37064653	37064653	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	37064653	37064653	T	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.8074	p.S2692T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190	tier1	-	-	31	0	0.00	55	14	20.29
NLRP11	0	genome.wustl.edu	37	19	56300637	56300637	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	56300637	56300637	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	missense	c.2642	p.C881Y	0.005	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873	tier1	-	-	68	0	0.00	55	24	30.38
NTN3	0	genome.wustl.edu	37	16	2521982	2521982	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	16	2521982	2521982	C	T	SNP	NTN3	ENST00000293973	human	ensembl	74_37	+1	known	missense	c.280	p.R94C	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN3	HGNC	ENSG00000162068	tier1	-	-	52	0	0.00	46	11	19.30
NUMA1	0	genome.wustl.edu	37	11	71726383	71726384	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	11	71726383	71726384	-	T	INS	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	frame_shift_ins	c.2166_2165	p.R723fs	0.967:1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	tier1			16	0	0.00	17	15	46.88
NXPH3	0	genome.wustl.edu	37	17	47656098	47656098	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	47656098	47656098	C	T	SNP	NXPH3	ENST00000328741	human	ensembl	74_37	+1	known	silent	c.195	p.L65	0.790	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH3	HGNC	ENSG00000182575	tier1	-	-	95	0	0.00	69	23	24.73
OR10H1	0	genome.wustl.edu	37	19	15918306	15918306	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	15918306	15918306	A	G	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	missense	c.542	p.V181A	0.020	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723	tier1	-	-	138	0	0.00	170	13	7.10
PANK4	0	genome.wustl.edu	37	1	2441583	2441583	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	2441583	2441583	C	A	SNP	PANK4	ENST00000378466	human	ensembl	74_37	-1	known	missense	c.1952	p.C651F	1.000	pfam_DUF89,superfamily_DUF89,pirsf_PanK_long	pfam_Type_II_PanK,pfam_DUF89,superfamily_DUF89,pirsf_PanK_long,tigrfam_Type_II_PanK	-	no_errors	PANK4	HGNC	ENSG00000157881	tier1	-	-	44	0	0.00	38	20	33.90
PCDHB14	0	genome.wustl.edu	37	5	140604553	140604553	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	140604553	140604553	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	silent	c.1476	p.P492	0.028	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	tier1	-	-	211	0	0.00	164	12	6.82
PCDHGA5	0	genome.wustl.edu	37	5	140745554	140745554	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	140745554	140745554	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	silent	c.1657	p.L553	0.010	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	tier1	-	-	83	0	0.00	78	6	7.14
PDE4DIP	0	genome.wustl.edu	37	1	144882552	144882552	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	144882552	144882552	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.3467	p.S1156F	0.001	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	210	0	0.00	271	30	9.93
PLGLB2	0	genome.wustl.edu	37	2	88047674	88047674	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	88047674	88047674	T	C	SNP	PLGLB2	ENST00000359481	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	0.953	NULL	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	-	no_errors	PLGLB2	HGNC	ENSG00000125551	tier1	-	-	54	0	0.00	66	28	29.79
PMP22	0	genome.wustl.edu	37	17	15134264	15134264	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	15134264	15134264	G	T	SNP	PMP22	ENST00000494511	human	ensembl	74_37	-1	novel	missense	c.274	p.H92N	0.283	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099	tier1	-	-	33	0	0.00	23	15	39.47
PPP1R13L	0	genome.wustl.edu	37	19	45900156	45900156	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	45900156	45900156	G	A	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.359	p.S120L	0.510	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881	tier1	-	-	20	0	0.00	8	4	33.33
PPP2R3B	0	genome.wustl.edu	37	X	307473	307473	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	X	307473	307473	T	C	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.755	p.K252R	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393	tier1	-	-	77	0	0.00	35	46	56.79
PREX1	0	genome.wustl.edu	37	20	47364399	47364399	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	47364399	47364399	G	A	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.238	p.R80W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	tier1	-	-	26	0	0.00	32	4	11.11
PRKDC	0	genome.wustl.edu	37	8	48734271	48734271	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	48734271	48734271	T	C	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.9002	p.Y3001C	1.000	pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1	-	-	58	0	0.00	54	40	42.55
PRKDC	0	genome.wustl.edu	37	8	48866909	48866910	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	8	48866909	48866910	-	T	INS	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_ins	c.497_496	p.I166fs	0.999:0.999	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1			65	0	0.00	72	25	25.77
PTEN	0	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	10	89692904	89692904	C	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	nonsense	c.388	p.R130*	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1	rs121909224	-	96	0	0.00	80	8	9.09
PTEN	0	genome.wustl.edu	37	10	89717762	89717762	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	10	89717762	89717762	A	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	nonsense	c.787	p.K263*	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1	-	-	64	0	0.00	36	44	55.00
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41113275	41113275	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	41113275	41113275	G	T	SNP	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	missense	c.787	p.P263T	0.994	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825	tier1	-	-	65	0	0.00	75	4	5.06
PTGIS	0	genome.wustl.edu	37	20	48130860	48130860	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	48130860	48130860	G	A	SNP	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	missense	c.928	p.R310C	0.179	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	tier1	-	-	29	0	0.00	15	18	54.55
RARG	0	genome.wustl.edu	37	12	53621213	53621213	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	12	53621213	53621213	G	A	SNP	RARG	ENST00000394426	human	ensembl	74_37	-1	known	silent	c.117	p.F39	0.998	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC	ENSG00000172819	tier1	-	-	117	0	0.00	106	30	22.06
RB1	0	genome.wustl.edu	37	13	48955516	48955516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	13	48955516	48955516	A	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.1632	p.E545fs	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			31	0	0.00	15	29	65.91
RCAN1	0	genome.wustl.edu	37	21	35893948	35893948	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	21	35893948	35893948	G	T	SNP	RCAN1	ENST00000313806	human	ensembl	74_37	-1	known	missense	c.435	p.H145Q	1.000	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN1	HGNC	ENSG00000159200	tier1	-	-	45	0	0.00	45	4	8.16
RHBDF2	0	genome.wustl.edu	37	17	74467981	74467981	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	74467981	74467981	C	T	SNP	RHBDF2	ENST00000313080	human	ensembl	74_37	-1	known	missense	c.2305	p.D769N	1.000	pfam_Peptidase_S54_rhomboid_dom	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	tier1	-	-	44	0	0.00	67	26	27.96
RNF216	0	genome.wustl.edu	37	7	5760759	5760759	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	5760759	5760759	G	A	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	nonsense	c.1549	p.R517*	1.000	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275	tier1	-	-	51	0	0.00	49	22	30.99
SDK2	0	genome.wustl.edu	37	17	71375666	71375666	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	71375666	71375666	G	C	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	nonsense	c.4785	p.Y1595*	0.693	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	34	0	0.00	54	26	32.50
SETX	0	genome.wustl.edu	37	9	135173511	135173511	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	9	135173511	135173511	C	G	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.5737	p.D1913H	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290	tier1	-	-	32	0	0.00	43	9	17.31
SHANK3	0	genome.wustl.edu	37	22	51117786	51117786	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	22	51117786	51117786	A	C	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	missense	c.815	p.Y272S	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322	tier1	-	-	65	0	0.00	71	32	30.77
SKOR1	0	genome.wustl.edu	37	15	68124644	68124644	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	15	68124644	68124644	G	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	nonsense	c.2620	p.E874*	1.000	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779	tier1	-	-	28	0	0.00	37	8	17.78
SLC25A4	0	genome.wustl.edu	37	4	186066978	186066978	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	4	186066978	186066978	G	T	SNP	SLC25A4	ENST00000281456	human	ensembl	74_37	+1	known	missense	c.664	p.A222S	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729	tier1	-	-	50	0	0.00	57	4	6.56
SLIT3	0	genome.wustl.edu	37	5	168310287	168310287	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	5	168310287	168310287	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	silent	c.468	p.I156	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				44	0	0.00	32	3	8.57
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305	tier1			28	0	0.00	55	4	6.78
SMARCC2	0	genome.wustl.edu	37	12	56574884	56574884	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	12	56574884	56574884	G	A	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.958	p.P320S	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	tier1	-	-	87	0	0.00	91	26	22.22
SMYD1	0	genome.wustl.edu	37	2	88405895	88405895	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	88405895	88405895	G	C	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	missense	c.1033	p.D345H	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	tier1	-	-	79	0	0.00	78	17	17.89
SNAP25	0	genome.wustl.edu	37	20	10277646	10277646	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	10277646	10277646	C	A	SNP	SNAP25	ENST00000254976	human	ensembl	74_37	+1	known	missense	c.355	p.R119S	1.000	pfam_SNAP-25	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639				48	0	0.00	56	3	5.08
SPTBN4	0	genome.wustl.edu	37	19	41071628	41071628	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	41071628	41071628	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.6116	p.R2039H	0.995	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	tier1	-	-	94	0	0.00	111	6	5.13
STOX2	0	genome.wustl.edu	37	4	184931510	184931510	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	4	184931510	184931510	G	T	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.1519	p.G507W	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320	tier1	-	-	38	0	0.00	17	13	43.33
STOX2	0	genome.wustl.edu	37	4	184932024	184932024	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	4	184932024	184932024	G	C	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.2033	p.G678A	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320	tier1	-	-	33	0	0.00	15	17	53.12
SUMO4	0	genome.wustl.edu	37	6	149721559	149721559	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	149721559	149721559	A	T	SNP	SUMO4	ENST00000326669	human	ensembl	74_37	+1	known	missense	c.32	p.K11M	1.000	NULL	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO4	HGNC	ENSG00000177688	tier1	-	-	72	0	0.00	70	25	26.32
SUSD4	0	genome.wustl.edu	37	1	223395466	223395466	+	RNA	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	223395466	223395466	G	T	SNP	SUSD4	ENST00000478605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SUSD4	HGNC	ENSG00000143502	tier1	-	-	41	0	0.00	86	10	10.42
TAF1A	0	genome.wustl.edu	37	1	222753163	222753163	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	222753163	222753163	T	C	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.343	p.M115V	0.003	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498	tier1	-	-	20	0	0.00	32	28	46.67
TP53	0	genome.wustl.edu	37	17	7577566	7577568	+	In_Frame_Del	DEL	TAC	TAC	-			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	TAC	TAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	17	7577566	7577568	TAC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.715_713	p.CN238in_frame_delY	1.000:0.999:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			65	0	0.00	32	48	60.00
TPX2	0	genome.wustl.edu	37	20	30385276	30385276	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	20	30385276	30385276	C	T	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	nonsense	c.2011	p.Q671*	1.000	NULL	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325				32	0	0.00	30	2	6.25
TRIM24	0	genome.wustl.edu	37	7	138264148	138264148	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	138264148	138264148	G	A	SNP	TRIM24	ENST00000343526	human	ensembl	74_37	+1	known	missense	c.2456	p.R819K	1.000	superfamily_Znf_FYVE_PHD	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779				48	0	0.00	49	3	5.77
TRIM73	0	genome.wustl.edu	37	7	75028599	75028599	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	75028599	75028599	G	A	SNP	TRIM73	ENST00000323819	human	ensembl	74_37	+1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	tier1	rs199603365	-	10	0	0.00	12	7	36.84
TSC2	0	genome.wustl.edu	37	16	2126084	2126084	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	16	2126084	2126084	C	T	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	silent	c.2655	p.I885	0.936	pfam_Tuberin-type_domain,prints_Tuberin	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197	tier1	-	-	162	0	0.00	156	20	11.36
TTLL2	0	genome.wustl.edu	37	6	167754288	167754288	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	6	167754288	167754288	C	T	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	silent	c.900	p.S300	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440	tier1	-	-	55	0	0.00	71	5	6.58
TTLL7	0	genome.wustl.edu	37	1	84394840	84394840	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	1	84394840	84394840	G	A	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.1121	p.A374V	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941	tier1	-	-	84	0	0.00	72	29	28.71
TTN	0	genome.wustl.edu	37	2	179588345	179588345	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	179588345	179588345	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.17750	p.R5917T	0.914	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	42	0	0.00	58	4	6.45
UROC1	0	genome.wustl.edu	37	3	126211314	126211314	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	3	126211314	126211314	G	A	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.1555	p.R519C	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650	tier1	rs201269614	-	46	0	0.00	67	15	18.29
USP34	0	genome.wustl.edu	37	2	61472421	61472421	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	2	61472421	61472421	T	C	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.6551	p.Y2184C	1.000	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464	tier1	-	-	35	0	0.00	31	14	31.11
VPS41	0	genome.wustl.edu	37	7	38794506	38794506	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	38794506	38794506	C	G	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1726	p.D576H	1.000	pfam_Clathrin_H-chain/VPS_repeat,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715	tier1	-	-	23	0	0.00	22	9	29.03
ZCCHC18	0	genome.wustl.edu	37	X	103359997	103359997	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	X	103359997	103359997	G	A	SNP	ZCCHC18	ENST00000537356	human	ensembl	74_37	+1	putative	missense	c.1195	p.A399T	0.000	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC18	HGNC	ENSG00000166707	tier1	-	-	29	0	0.00	38	4	9.52
ZNF267	0	genome.wustl.edu	37	16	31927357	31927357	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	16	31927357	31927357	G	A	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.1787	p.R596Q	0.130	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	tier1	-	-	44	0	0.00	21	13	38.24
ZNF394	0	genome.wustl.edu	37	7	99097549	99097549	+	Silent	SNP	A	A	C			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	7	99097549	99097549	A	C	SNP	ZNF394	ENST00000337673	human	ensembl	74_37	-1	known	silent	c.168	p.A56	0.001	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	tier1	-	-	51	0	0.00	41	14	25.00
ZNF415	0	genome.wustl.edu	37	19	53619598	53619598	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	53619598	53619598	A	G	SNP	ZNF415	ENST00000243643	human	ensembl	74_37	-1	known	missense	c.104	p.M35T	0.997	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF415	HGNC	ENSG00000170954	tier1	-	-	69	0	0.00	88	17	16.19
ZNF431	0	genome.wustl.edu	37	19	21366096	21366096	+	Silent	SNP	C	C	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	21366096	21366096	C	T	SNP	ZNF431	ENST00000311048	human	ensembl	74_37	+1	known	silent	c.990	p.T330	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705	tier1	-	-	58	0	0.00	38	8	17.39
ZNF469	0	genome.wustl.edu	37	16	88500055	88500055	+	Silent	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	16	88500055	88500055	G	A	SNP	ZNF469	ENST00000437464	human	ensembl	74_37	+1	known	silent	c.6093	p.P2031	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614				18	0	0.00	20	2	9.09
ZNF701	0	genome.wustl.edu	37	19	53086053	53086053	+	Silent	SNP	A	A	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	53086053	53086053	A	T	SNP	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	silent	c.939	p.V313	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562	tier1	-	-	74	0	0.00	100	17	14.41
ZNF77	0	genome.wustl.edu	37	19	2934253	2934253	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	19	2934253	2934253	G	A	SNP	ZNF77	ENST00000314531	human	ensembl	74_37	-1	known	missense	c.872	p.T291I	0.891	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691	tier1	-	-	75	0	0.00	50	32	39.02
ZSCAN29	0	genome.wustl.edu	37	15	43658902	43658902	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A4MQ-01A-11D-A28B-09	TCGA-LN-A4MQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	611d690b-36ec-4421-b1e4-ad1acd874607	14188af2-7b74-449c-83ca-2f0ffddd7fbb	15	43658902	43658902	G	T	SNP	ZSCAN29	ENST00000396976	human	ensembl	74_37	-1	known	missense	c.628	p.H210N	0.003	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265				73	0	0.00	68	4	5.56
