Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABI2	0	genome.wustl.edu	37	2	204255850	204255850	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	204255850	204255850	G	T	SNP	ABI2	ENST00000295851	human	ensembl	74_37	+1	known	missense	c.562	p.G188W	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443	tier1	-	-	37	0	0.00	6	30	83.33
AK8	0	genome.wustl.edu	37	9	135702310	135702310	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	135702310	135702310	T	C	SNP	AK8	ENST00000298545	human	ensembl	74_37	-1	known	missense	c.688	p.I230V	0.029	pfam_Adenylate_kin,superfamily_P-loop_NTPase	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695	tier1	-	-	85	0	0.00	85	25	22.73
AK8	0	genome.wustl.edu	37	9	135750508	135750508	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	135750508	135750508	C	T	SNP	AK8	ENST00000298545	human	ensembl	74_37	-1	known	missense	c.163	p.D55N	0.058	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695	tier1	-	-	68	0	0.00	108	48	30.77
ALG1	0	genome.wustl.edu	37	16	5121961	5121961	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	5121961	5121961	G	A	SNP	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	silent	c.111	p.A37	0.412	NULL	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011	tier1	-	-	36	0	0.00	23	10	30.30
APOB	0	genome.wustl.edu	37	2	21247744	21247744	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	21247744	21247744	G	A	SNP	APOB	ENST00000399256	human	ensembl	74_37	-1	putative	silent	c.2409	p.R803	0.001	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	43	0	0.00	19	5	20.83
B3GALTL	0	genome.wustl.edu	37	13	31860936	31860936	+	Silent	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	13	31860936	31860936	G	T	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	silent	c.1044	p.V348	1.000	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	tier1	-	-	73	0	0.00	69	9	11.54
C3	0	genome.wustl.edu	37	19	6690725	6690725	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	19	6690725	6690725	T	C	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.3404	p.N1135S	0.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730	tier1	-	-	66	0	0.00	30	24	44.44
CD244	0	genome.wustl.edu	37	1	160808623	160808623	+	RNA	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	160808623	160808623	G	T	SNP	CD244	ENST00000481677	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD244	HGNC	ENSG00000122223	tier1	-	-	22	0	0.00	23	5	17.86
CNR2	0	genome.wustl.edu	37	1	24201571	24201571	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	24201571	24201571	G	T	SNP	CNR2	ENST00000374472	human	ensembl	74_37	-1	known	nonsense	c.537	p.C179*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cnbnoid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_2,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR2	HGNC	ENSG00000188822				77	0	0.00	74	4	5.06
CTDSP1	0	genome.wustl.edu	37	2	219267102	219267102	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	219267102	219267102	G	C	SNP	CTDSP1	ENST00000273062	human	ensembl	74_37	+1	known	missense	c.352	p.V118L	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP1	HGNC	ENSG00000144579	tier1	-	-	76	0	0.00	21	48	69.57
CTPS2	0	genome.wustl.edu	37	X	16609020	16609020	+	RNA	DEL	A	A	-			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	X	16609020	16609020	A	-	DEL	CTPS2	ENST00000483053	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTPS2	HGNC	ENSG00000047230	tier1			9	0	0.00	13	3	18.75
CX3CL1	0	genome.wustl.edu	37	16	57416011	57416011	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	57416011	57416011	G	A	SNP	CX3CL1	ENST00000564948	human	ensembl	74_37	+1	putative	missense	c.140	p.S47N	0.000	NULL	NULL	-	no_errors	CX3CL1	HGNC	ENSG00000006210	tier1	-	-	58	0	0.00	42	37	46.84
CXXC1	0	genome.wustl.edu	37	18	47810910	47810911	+	In_Frame_Ins	INS	-	-	GCC			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	18	47810910	47810911	-	GCC	INS	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	in_frame_ins	c.1055_1054	p.352in_frame_insR	1.000:1.000	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832	tier1			44	0	0.00	14	10	41.67
CYTH3	0	genome.wustl.edu	37	7	6210543	6210543	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	7	6210543	6210543	C	T	SNP	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	missense	c.629	p.R210H	0.998	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256	tier1	-	-	80	0	0.00	57	24	29.63
DNASE1	0	genome.wustl.edu	37	16	3705487	3705487	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	3705487	3705487	T	A	SNP	DNASE1	ENST00000246949	human	ensembl	74_37	+1	known	missense	c.113	p.M38K	1.000	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	-	no_errors	DNASE1	HGNC	ENSG00000213918	tier1	-	-	100	0	0.00	114	6	5.00
DPH5	0	genome.wustl.edu	37	1	101456046	101456046	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	101456046	101456046	A	-	DEL	DPH5	ENST00000370109	human	ensembl	74_37	-1	known	frame_shift_del	c.776	p.I259fs	0.984	superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	-	no_errors	DPH5	HGNC	ENSG00000117543	tier1			65	0	0.00	54	27	33.33
EHMT1	0	genome.wustl.edu	37	9	140657246	140657246	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	140657246	140657246	A	C	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.1621	p.M541L	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	tier1	-	-	66	0	0.00	23	65	73.86
ELP5	0	genome.wustl.edu	37	17	7156110	7156110	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	7156110	7156110	G	T	SNP	ELP5	ENST00000354429	human	ensembl	74_37	+1	known	missense	c.116	p.R39L	0.996	pfam_Elp5	pfam_Elp5	-	no_errors	ELP5	HGNC	ENSG00000170291	tier1	-	-	101	0	0.00	75	28	27.18
ENO4	0	genome.wustl.edu	37	10	118620366	118620366	+	Silent	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	118620366	118620366	C	A	SNP	ENO4	ENST00000341276	human	ensembl	74_37	+1	known	silent	c.699	p.L233	0.190	NULL	pfam_Enolase_C,pfam_Enolase_N	-	no_errors	ENO4	HGNC	ENSG00000188316	tier1	-	-	79	0	0.00	62	24	27.91
ENPP3	0	genome.wustl.edu	37	6	132054857	132054857	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	6	132054857	132054857	C	G	SNP	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	missense	c.2083	p.P695A	1.000	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	tier1	-	-	31	0	0.00	37	14	27.45
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TA			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	3	183520323	183520324	-	TA	INS	ENSG00000216166	ENST00000401347	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene	ENSG00000216166	tier1			15	0	0.00	28	8	22.22
ENSG00000221220	0	genome.wustl.edu	37	20	17823269	17823269	+	RNA	DEL	T	T	-			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	20	17823269	17823269	T	-	DEL	ENSG00000221220	ENST00000408293	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AL035045.1	Clone_based_ensembl_gene	ENSG00000221220	tier1			29	0	0.00	21	8	27.59
ENSG00000257743	0	genome.wustl.edu	37	7	141857806	141857806	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	7	141857806	141857806	C	T	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	missense	c.1993	p.R665C	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743	tier1	-	-	90	0	0.00	70	32	31.37
ENSG00000258727	0	genome.wustl.edu	37	14	24035227	24035227	+	RNA	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	14	24035227	24035227	C	A	SNP	ENSG00000258727	ENST00000555968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-66N24.3	Clone_based_vega_gene	ENSG00000258727	tier1	-	-	37	0	0.00	35	13	27.08
EPB41L4A	0	genome.wustl.edu	37	5	111540178	111540178	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	5	111540178	111540178	A	G	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.1270	p.Y424H	1.000	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	tier1	-	-	52	0	0.00	38	31	44.93
FAM171B	0	genome.wustl.edu	37	2	187559026	187559026	+	Silent	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	187559026	187559026	C	A	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	silent	c.126	p.I42	1.000	NULL	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				18	0	0.00	50	5	8.93
FAM63A	0	genome.wustl.edu	37	1	150978596	150978596	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	150978596	150978596	C	T	SNP	FAM63A	ENST00000361738	human	ensembl	74_37	-1	known	silent	c.36	p.T12	0.000	NULL	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	tier1	-	-	72	0	0.00	68	4	5.56
FBXO43	0	genome.wustl.edu	37	8	101146049	101146049	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	8	101146049	101146049	C	T	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	missense	c.2108	p.R703Q	1.000	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	tier1	rs202056051	-	38	0	0.00	17	8	32.00
FILIP1L	0	genome.wustl.edu	37	3	99567929	99567929	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	3	99567929	99567929	G	T	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.2591	p.P864H	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	tier1	-	-	81	0	0.00	40	31	43.06
FLJ46363	0	genome.wustl.edu	37	12	10103882	10103882	+	RNA	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	10103882	10103882	G	T	SNP	FLJ46363	ENST00000420905	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	AC091814.3	Clone_based_vega_gene	ENSG00000231560	tier1	-	-	33	0	0.00	16	16	50.00
FOXD4	0	genome.wustl.edu	37	9	117909	117909	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	117909	117909	C	T	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	missense	c.211	p.E71K	0.010	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122	tier1	-	-	238	0	0.00	176	18	9.28
FRA10AC1	0	genome.wustl.edu	37	10	95433292	95433292	+	RNA	SNP	T	T	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	95433292	95433292	T	A	SNP	FRA10AC1	ENST00000460752	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FRA10AC1	HGNC	ENSG00000148690	tier1	-	-	22	0	0.00	17	10	37.04
FRMD3	0	genome.wustl.edu	37	9	85950526	85950526	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	85950526	85950526	C	A	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	missense	c.501	p.E167D	0.999	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				21	0	0.00	23	2	8.00
FRRS1	0	genome.wustl.edu	37	1	100207810	100207810	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	100207810	100207810	C	T	SNP	FRRS1	ENST00000287474	human	ensembl	74_37	-1	known	missense	c.353	p.R118K	0.990	pfam_Reeler_dom,pfscan_Reeler_dom	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	tier1	-	-	37	0	0.00	21	16	43.24
FTX	0	genome.wustl.edu	37	X	73289338	73289338	+	RNA	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	X	73289338	73289338	G	T	SNP	FTX	ENST00000602420	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.902	-	-	-	no_errors	FTX	HGNC	ENSG00000230590	tier1	-	-	15	0	0.00	2	6	75.00
GRM7	0	genome.wustl.edu	37	3	6828372	6828372	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	3	6828372	6828372	A	T	SNP	GRM7	ENST00000443259	human	ensembl	74_37	+1	known	missense	c.160	p.R54W	0.057	NULL	NULL	-	no_errors	GRM7	HGNC	ENSG00000196277	tier1	-	-	35	0	0.00	16	13	44.83
H3F3C	0	genome.wustl.edu	37	12	31945089	31945089	+	Silent	SNP	G	G	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	31945089	31945089	G	C	SNP	H3F3C	ENST00000340398	human	ensembl	74_37	-1	known	silent	c.12	p.T4	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3C	HGNC	ENSG00000188375	tier1	-	-	78	0	0.00	73	23	23.96
HIST1H2BH	0	genome.wustl.edu	37	6	26252252	26252252	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	6	26252252	26252252	C	G	SNP	HIST1H2BH	ENST00000356350	human	ensembl	74_37	+1	known	missense	c.374	p.S125C	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459	tier1	-	-	78	0	0.00	20	21	51.22
HTR3E	0	genome.wustl.edu	37	3	183818349	183818349	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	3	183818349	183818349	G	A	SNP	HTR3E	ENST00000335304	human	ensembl	74_37	+1	known	silent	c.189	p.V63	0.143	superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038	tier1	-	-	78	0	0.00	137	28	16.97
IDH1	0	genome.wustl.edu	37	2	209106806	209106806	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	209106806	209106806	C	T	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	missense	c.762	p.M254I	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413	tier1	-	-	35	0	0.00	35	5	12.50
INSC	0	genome.wustl.edu	37	11	15260470	15260470	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	11	15260470	15260470	C	A	SNP	INSC	ENST00000379554	human	ensembl	74_37	+1	known	missense	c.1384	p.Q462K	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487	tier1	-	-	56	0	0.00	94	7	6.93
ITPK1-AS1	0	genome.wustl.edu	37	14	93534154	93534154	+	RNA	SNP	T	T	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	14	93534154	93534154	T	A	SNP	ITPK1-AS1	ENST00000553639	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITPK1-AS1	HGNC	ENSG00000258730				30	0	0.00	31	4	11.43
ITPK1-AS1	0	genome.wustl.edu	37	14	93534155	93534155	+	RNA	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	14	93534155	93534155	G	T	SNP	ITPK1-AS1	ENST00000553639	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITPK1-AS1	HGNC	ENSG00000258730				31	0	0.00	32	4	11.11
KCNJ12	0	genome.wustl.edu	37	17	21319869	21319869	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	21319869	21319869	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	silent	c.1215	p.S405	1.000	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	tier1	-	-	39	0	0.00	62	5	7.46
KCNN2	0	genome.wustl.edu	37	5	113698694	113698694	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	5	113698694	113698694	C	G	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.222	p.N74K	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	tier1	-	-	41	0	0.00	32	18	36.00
KIAA0319	0	genome.wustl.edu	37	6	24566850	24566850	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	6	24566850	24566850	C	T	SNP	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	missense	c.2267	p.R756Q	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_Fibronectin_type3,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	tier1	-	-	15	0	0.00	11	10	47.62
KMT2D	0	genome.wustl.edu	37	12	49420377	49420378	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	49420377	49420378	-	A	INS	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_ins	c.15372_15371	p.M5124fs	1.000:1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1			27	0	0.00	23	3	11.54
KMT2D	0	genome.wustl.edu	37	12	49426916	49426916	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	49426916	49426916	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	nonsense	c.11572	p.Q3858*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1	-	-	47	0	0.00	53	51	49.04
KRT15	0	genome.wustl.edu	37	17	39671781	39671781	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	39671781	39671781	G	T	SNP	KRT15	ENST00000254043	human	ensembl	74_37	-1	known	missense	c.1190	p.T397K	0.947	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT15	HGNC	ENSG00000171346	tier1	-	-	52	0	0.00	63	4	5.97
KRTAP11-1	0	genome.wustl.edu	37	21	32253537	32253537	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	21	32253537	32253537	G	T	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	missense	c.307	p.P103T	0.938	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591	tier1	-	-	22	0	0.00	22	16	42.11
LOC284898	0	genome.wustl.edu	37	22	27445847	27445847	+	RNA	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	22	27445847	27445847	C	T	SNP	LOC284898	ENST00000453934	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CTA-992D9.6	Clone_based_vega_gene	ENSG00000236858	tier1	-	-	22	0	0.00	17	8	32.00
LOC642852	0	genome.wustl.edu	37	21	46711242	46711242	+	RNA	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	21	46711242	46711242	G	A	SNP	LOC642852	ENST00000400362	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BX322557.10	Clone_based_vega_gene	ENSG00000215447	tier1	-	-	16	0	0.00	10	9	47.37
MAMDC2	0	genome.wustl.edu	37	9	72783711	72783711	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	72783711	72783711	G	C	SNP	MAMDC2	ENST00000377182	human	ensembl	74_37	+1	known	missense	c.1498	p.E500Q	1.000	NULL	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072	tier1	-	-	33	0	0.00	33	16	32.65
MIR514A2	0	genome.wustl.edu	37	X	146363520	146363520	+	RNA	SNP	A	A	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	X	146363520	146363520	A	C	SNP	MIR514A2	ENST00000385131	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR514A2	HGNC	ENSG00000207866	tier1	-	-	22	0	0.00	14	14	50.00
MOB1B	0	genome.wustl.edu	37	4	71840984	71840984	+	Silent	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	4	71840984	71840984	G	T	SNP	MOB1B	ENST00000309395	human	ensembl	74_37	+1	known	silent	c.390	p.T130	0.183	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1B	HGNC	ENSG00000173542				48	0	0.00	27	2	6.90
MOSPD1	0	genome.wustl.edu	37	X	134033227	134033227	+	RNA	DEL	T	T	-			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	X	134033227	134033227	T	-	DEL	MOSPD1	ENST00000462060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928	tier1			30	0	0.00	26	5	16.13
NFE2L2	0	genome.wustl.edu	37	2	178098944	178098945	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	178098944	178098945	-	T	INS	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	frame_shift_ins	c.101_100	p.R34fs	1.000:1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	tier1			55	0	0.00	17	2	10.53
NFE2L2	0	genome.wustl.edu	37	2	178098928	178098928	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	178098928	178098928	G	T	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.117	p.F39L	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044				60	0	0.00	18	6	25.00
NR1H4	0	genome.wustl.edu	37	12	100955761	100955761	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	100955761	100955761	G	T	SNP	NR1H4	ENST00000551379	human	ensembl	74_37	+1	known	missense	c.1207	p.V403F	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504				28	0	0.00	20	9	31.03
OLAH	0	genome.wustl.edu	37	10	15091715	15091715	+	Silent	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	15091715	15091715	C	A	SNP	OLAH	ENST00000378217	human	ensembl	74_37	+1	known	silent	c.114	p.G38	0.992	NULL	pfam_Thioesterase	-	no_errors	OLAH	HGNC	ENSG00000152463	tier1	-	-	54	0	0.00	19	18	48.65
OR6C2	0	genome.wustl.edu	37	12	55846702	55846702	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	12	55846702	55846702	C	T	SNP	OR6C2	ENST00000322678	human	ensembl	74_37	+1	known	silent	c.705	p.A235	0.961	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	tier1	-	-	46	0	0.00	44	18	29.03
PI4KB	0	genome.wustl.edu	37	1	151278723	151278723	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	151278723	151278723	G	A	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	silent	c.1335	p.P445	0.020	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393	tier1	-	-	54	0	0.00	33	39	54.17
PIK3C2A	0	genome.wustl.edu	37	11	17111318	17111318	+	Silent	SNP	T	T	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	11	17111318	17111318	T	C	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	silent	c.5028	p.K1676	1.000	superfamily_C2_dom,smart_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405	tier1	-	-	31	0	0.00	44	13	22.81
PMFBP1	0	genome.wustl.edu	37	16	72154011	72154011	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	72154011	72154011	G	A	SNP	PMFBP1	ENST00000355636	human	ensembl	74_37	-1	known	missense	c.2371	p.R791C	0.002	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557	tier1	-	-	78	0	0.00	48	27	35.06
PNOC	0	genome.wustl.edu	37	8	28196578	28196578	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	8	28196578	28196578	G	A	SNP	PNOC	ENST00000301908	human	ensembl	74_37	+1	known	missense	c.148	p.E50K	0.996	pfam_Opioid_neupept,prints_Nociceptin,prints_Opioid_neupept	pfam_Opioid_neupept,prints_Nociceptin,prints_Opioid_neupept	-	no_errors	PNOC	HGNC	ENSG00000168081	tier1	-	-	46	0	0.00	10	19	65.52
POLR3A	0	genome.wustl.edu	37	10	79784767	79784767	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	79784767	79784767	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.452	p.R151Q	0.986	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				42	0	0.00	35	2	5.41
POTEJ	0	genome.wustl.edu	37	2	131414147	131414147	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	131414147	131414147	G	C	SNP	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	missense	c.1814	p.R605T	0.012	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038	tier1	-	-	317	0	0.00	152	73	32.44
POU6F2	0	genome.wustl.edu	37	7	39247015	39247015	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	7	39247015	39247015	G	A	SNP	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	missense	c.307	p.A103T	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	tier1	-	-	30	0	0.00	24	4	14.29
PPRC1	0	genome.wustl.edu	37	10	103908361	103908361	+	RNA	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	103908361	103908361	G	T	SNP	PPRC1	ENST00000495914	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPRC1	HGNC	ENSG00000148840	tier1	-	-	55	0	0.00	37	15	28.85
RAB2A	0	genome.wustl.edu	37	8	61496839	61496839	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	8	61496839	61496839	G	A	SNP	RAB2A	ENST00000262646	human	ensembl	74_37	+1	known	missense	c.259	p.D87N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2A	HGNC	ENSG00000104388	tier1	-	-	66	0	0.00	43	12	21.82
RGL1	0	genome.wustl.edu	37	1	183867029	183867029	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	183867029	183867029	A	G	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.1333	p.M445V	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344	tier1	-	-	35	0	0.00	31	11	26.19
RPE65	0	genome.wustl.edu	37	1	68906589	68906589	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	68906589	68906589	C	A	SNP	RPE65	ENST00000262340	human	ensembl	74_37	-1	known	missense	c.590	p.G197V	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745	tier1	-	-	28	0	0.00	11	9	45.00
SALL1	0	genome.wustl.edu	37	16	51174133	51174133	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	51174133	51174133	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2000	p.S667F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1	-	-	61	0	0.00	29	19	38.78
SBSN	0	genome.wustl.edu	37	19	36018071	36018071	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	19	36018071	36018071	C	T	SNP	SBSN	ENST00000452271	human	ensembl	74_37	-1	novel	silent	c.1113	p.G371	0.630	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001	tier1	-	-	136	0	0.00	87	43	33.08
SGIP1	0	genome.wustl.edu	37	1	67108534	67108534	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	67108534	67108534	C	T	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	silent	c.282	p.P94	0.048	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				44	0	0.00	36	8	18.18
SKOR1	0	genome.wustl.edu	37	15	68122570	68122570	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	15	68122570	68122570	G	A	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.2449	p.E817K	1.000	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779	tier1	-	-	68	0	0.00	17	34	66.67
SLC18A3	0	genome.wustl.edu	37	10	50820104	50820104	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	10	50820104	50820104	G	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.1318	p.G440C	0.999	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714	tier1	-	-	63	0	0.00	53	4	7.02
STAB1	0	genome.wustl.edu	37	3	52551965	52551965	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	3	52551965	52551965	C	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	nonsense	c.4707	p.C1569*	0.035	superfamily_FAS1_domain,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	tier1	-	-	31	0	0.00	14	13	48.15
STXBP6	0	genome.wustl.edu	37	14	25325274	25325274	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	14	25325274	25325274	C	A	SNP	STXBP6	ENST00000323944	human	ensembl	74_37	-1	known	missense	c.319	p.A107S	1.000	NULL	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952	tier1	-	-	28	0	0.00	24	10	29.41
SUPT5H	0	genome.wustl.edu	37	19	39963105	39963105	+	Silent	SNP	C	C	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	19	39963105	39963105	C	T	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	silent	c.2007	p.I669	1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	tier1	-	-	75	0	0.00	54	29	34.94
SYNE1	0	genome.wustl.edu	37	6	152614873	152614873	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	6	152614873	152614873	C	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.17862	p.K5954N	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				38	0	0.00	45	3	6.25
TAOK2	0	genome.wustl.edu	37	16	29998794	29998794	+	Silent	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	29998794	29998794	C	A	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	silent	c.3201	p.G1067	0.945	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930	tier1	-	-	74	0	0.00	51	38	42.70
TCEB3B	0	genome.wustl.edu	37	18	44560391	44560391	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	18	44560391	44560391	G	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.1245	p.N415K	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				92	0	0.00	55	3	5.17
TECTA	0	genome.wustl.edu	37	11	120998865	120998865	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	11	120998865	120998865	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.2179	p.A727T	0.899	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927	tier1	-	-	35	0	0.00	26	10	27.78
TEPP	0	genome.wustl.edu	37	16	58018605	58018605	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	58018605	58018605	G	A	SNP	TEPP	ENST00000290871	human	ensembl	74_37	+1	known	silent	c.516	p.A172	0.037	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648	tier1	-	-	83	0	0.00	52	27	34.18
TEX14	0	genome.wustl.edu	37	17	56663385	56663385	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	56663385	56663385	C	A	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	missense	c.2865	p.W955C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	tier1	-	-	52	0	0.00	23	12	34.29
TLE1	0	genome.wustl.edu	37	9	84268949	84268949	+	Silent	SNP	A	A	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	9	84268949	84268949	A	C	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	silent	c.237	p.T79	0.990	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781	tier1	-	-	27	0	0.00	16	5	23.81
TMCO4	0	genome.wustl.edu	37	1	20066381	20066381	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	1	20066381	20066381	A	C	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	missense	c.1115	p.V372G	1.000	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	tier1	-	-	37	0	0.00	39	25	39.06
TNIP1	0	genome.wustl.edu	37	5	150443229	150443229	+	Silent	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	5	150443229	150443229	C	A	SNP	TNIP1	ENST00000315050	human	ensembl	74_37	-1	known	silent	c.216	p.L72	0.006	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901	tier1	-	-	94	0	0.00	68	45	39.82
TP53	0	genome.wustl.edu	37	17	7577595	7577595	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	7577595	7577595	C	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.686	p.C229fs	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			72	0	0.00	27	88	76.52
TP53	0	genome.wustl.edu	37	17	7577595	7577595	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	17	7577595	7577595	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.686	p.C229F	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				72	0	0.00	20	7	6.09
TP53BP1	0	genome.wustl.edu	37	15	43748741	43748741	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	15	43748741	43748741	T	G	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.2065	p.M689L	0.014	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	tier1	-	-	39	0	0.00	10	20	66.67
TSC2	0	genome.wustl.edu	37	16	2111977	2111977	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	16	2111977	2111977	G	T	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	nonsense	c.1225	p.E409*	0.995	pfam_Tuberin_N,superfamily_ARM-type_fold	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197	tier1	-	-	86	0	0.00	57	24	29.63
TTN	0	genome.wustl.edu	37	2	179588638	179588638	+	Silent	SNP	G	G	A			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	2	179588638	179588638	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.17616	p.C5872	0.472	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	33	0	0.00	28	6	17.65
UBXN1	0	genome.wustl.edu	37	11	62444034	62444035	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	11	62444034	62444035	-	C	INS	UBXN1	ENST00000533000	human	ensembl	74_37	-1	putative	frame_shift_ins	c.303_302	p.*101fs	1.000:0.977	NULL	NULL	-	no_errors	UBXN1	HGNC	ENSG00000162191	tier1			83	0	0.00	54	28	34.15
UNC5D	0	genome.wustl.edu	37	8	35425616	35425616	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	8	35425616	35425616	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.323	p.G108V	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687	tier1	-	-	60	0	0.00	30	23	43.40
ZNFX1	0	genome.wustl.edu	37	20	47855789	47855789	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A5U5-01A-21D-A28B-09	TCGA-LN-A5U5-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	83e92f18-198e-46bc-b4be-f3b867579909	6f06991d-86dd-42a1-8ea0-8d832543ddb8	20	47855789	47855789	G	T	SNP	ZNFX1	ENST00000371754	human	ensembl	74_37	-1	known	missense	c.3475	p.R1159S	0.895	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	ZNFX1	HGNC	ENSG00000124201				46	0	0.00	57	3	5.00
