Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCB11	0	genome.wustl.edu	37	2	169850332	169850332	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	169850332	169850332	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.672	p.M224I	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734	tier1	-	-	98	0	0.00	39	35	47.30
AGBL2	0	genome.wustl.edu	37	11	47727462	47727462	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	47727462	47727462	G	C	SNP	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	missense	c.240	p.I80M	0.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	tier1	-	-	151	0	0.00	105	51	32.69
AQP4-AS1	0	genome.wustl.edu	37	18	24513645	24513645	+	RNA	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	18	24513645	24513645	T	A	SNP	AQP4-AS1	ENST00000568797	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	AQP4-AS1	HGNC	ENSG00000260372	tier1	-	-	33	0	0.00	20	7	25.93
ARHGEF3	0	genome.wustl.edu	37	3	56763546	56763546	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	56763546	56763546	G	T	SNP	ARHGEF3	ENST00000338458	human	ensembl	74_37	-1	known	missense	c.1429	p.R477S	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947				45	0	0.00	29	2	6.45
ASXL3	0	genome.wustl.edu	37	18	31326180	31326180	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	18	31326180	31326180	C	G	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.6368	p.S2123C	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	tier1	-	-	81	0	0.00	44	20	31.25
BAZ2A	0	genome.wustl.edu	37	12	57003984	57003984	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	57003984	57003984	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.1801	p.V601M	0.036	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	tier1	-	-	85	0	0.00	18	39	68.42
BCL7C	0	genome.wustl.edu	37	16	30903911	30903911	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	16	30903911	30903911	C	T	SNP	BCL7C	ENST00000574418	human	ensembl	74_37	-1	known	missense	c.296	p.R99K	1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385	tier1	-	-	37	0	0.00	33	10	22.73
BET1L	0	genome.wustl.edu	37	11	180257	180257	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	180257	180257	T	C	SNP	BET1L	ENST00000410108	human	ensembl	74_37	-1	putative	missense	c.316	p.T106A	0.010	NULL	pfscan_T_SNARE_dom	-	no_errors	BET1L	HGNC	ENSG00000177951	tier1	rs199807399	-	43	0	0.00	6	5	45.45
BRAP	0	genome.wustl.edu	37	12	112123540	112123540	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	112123540	112123540	G	A	SNP	BRAP	ENST00000419234	human	ensembl	74_37	-1	known	silent	c.57	p.P19	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234	tier1	-	-	36	0	0.00	25	19	43.18
BRIX1	0	genome.wustl.edu	37	5	34918517	34918517	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	5	34918517	34918517	A	T	SNP	BRIX1	ENST00000336767	human	ensembl	74_37	+1	known	missense	c.208	p.I70L	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	tier1	-	-	160	0	0.00	103	198	65.78
BSN	0	genome.wustl.edu	37	3	49700504	49700504	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	49700504	49700504	G	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.10913	p.R3638H	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	tier1	rs147167809	-	42	0	0.00	19	18	48.65
C3orf72	0	genome.wustl.edu	37	3	138669212	138669212	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	138669212	138669212	C	T	SNP	C3orf72	ENST00000383165	human	ensembl	74_37	+1	known	missense	c.326	p.S109L	0.000	NULL	NULL	-	no_errors	C3orf72	HGNC	ENSG00000206262	tier1	-	-	19	0	0.00	14	27	65.85
C5orf47	0	genome.wustl.edu	37	5	173426803	173426803	+	Splice_Site	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	5	173426803	173426803	G	T	SNP	C5orf47	ENST00000340147	human	ensembl	74_37	+1	known	splice_site	c.511+1	e3+1	0.998	-	-	-	no_errors	C5orf47	HGNC	ENSG00000185056				64	0	0.00	41	3	6.82
CATSPER1	0	genome.wustl.edu	37	11	65793409	65793409	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	65793409	65793409	G	C	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	missense	c.442	p.H148D	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	tier1	-	-	52	0	0.00	36	22	37.93
CCDC146	0	genome.wustl.edu	37	7	76908384	76908384	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	76908384	76908384	G	C	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	missense	c.1660	p.E554Q	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205	tier1	-	-	150	0	0.00	73	53	42.06
CCDC88B	0	genome.wustl.edu	37	11	64108393	64108393	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	64108393	64108393	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.221	p.R74Q	0.998	pfam_Hook-related_fam	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071	tier1	-	-	91	0	0.00	49	47	48.96
CD4	0	genome.wustl.edu	37	12	6909240	6909240	+	RNA	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	6909240	6909240	C	G	SNP	CD4	ENST00000535466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD4	HGNC	ENSG00000010610	tier1	-	-	92	0	0.00	36	46	55.42
CDC37L1	0	genome.wustl.edu	37	9	4685165	4685165	+	RNA	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	4685165	4685165	G	T	SNP	CDC37L1	ENST00000479095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC37L1	HGNC	ENSG00000106993	tier1	-	-	117	0	0.00	66	4	5.71
CDCA2	0	genome.wustl.edu	37	8	25340994	25340994	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	25340994	25340994	A	G	SNP	CDCA2	ENST00000330560	human	ensembl	74_37	+1	known	missense	c.1112	p.K371R	0.090	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	tier1	-	-	173	0	0.00	38	71	65.14
CDH10	0	genome.wustl.edu	37	5	24509822	24509822	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	5	24509822	24509822	A	G	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1109	p.I370T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	tier1	-	-	90	0	0.00	112	27	19.42
CEACAM18	0	genome.wustl.edu	37	19	51983739	51983739	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	51983739	51983739	G	A	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	missense	c.388	p.A130T	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822	tier1	-	-	94	0	0.00	68	35	33.98
CELSR2	0	genome.wustl.edu	37	1	109793875	109793875	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	109793875	109793875	G	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.1174	p.D392Y	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				100	0	0.00	50	3	5.66
CEP164	0	genome.wustl.edu	37	11	117282842	117282842	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	117282842	117282842	G	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.4341	p.L1447	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274	tier1	-	-	44	0	0.00	59	4	6.35
CHMP5	0	genome.wustl.edu	37	9	33266059	33266059	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	33266059	33266059	G	T	SNP	CHMP5	ENST00000223500	human	ensembl	74_37	+1	known	nonsense	c.121	p.E41*	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP5	HGNC	ENSG00000086065	tier1	-	-	55	0	0.00	41	4	8.89
CHRM3	0	genome.wustl.edu	37	1	240072316	240072316	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	240072316	240072316	C	G	SNP	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	missense	c.1565	p.P522R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	tier1	-	-	73	0	0.00	63	34	35.05
CLK2	0	genome.wustl.edu	37	1	155239248	155239248	+	RNA	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	155239248	155239248	G	A	SNP	CLK2	ENST00000484699	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.520	-	-	-	no_errors	CLK2	HGNC	ENSG00000176444	tier1	-	-	35	0	0.00	38	24	38.10
CLTCL1	0	genome.wustl.edu	37	22	19210297	19210297	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	22	19210297	19210297	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	silent	c.2328	p.I776	0.911	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	tier1	-	-	84	0	0.00	65	4	5.80
CNN3	0	genome.wustl.edu	37	1	95367275	95367275	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	95367275	95367275	G	A	SNP	CNN3	ENST00000370206	human	ensembl	74_37	-1	known	missense	c.451	p.R151C	1.000	superfamily_CH-domain	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN3	HGNC	ENSG00000117519				66	0	0.00	35	2	5.41
COL18A1	0	genome.wustl.edu	37	21	46888269	46888269	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	21	46888269	46888269	G	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.1465	p.A489S	0.968	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				91	0	0.00	62	4	6.06
COL28A1	0	genome.wustl.edu	37	7	7413142	7413142	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	7413142	7413142	G	T	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	missense	c.2395	p.L799M	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				51	0	0.00	24	3	11.11
CRYBA4	0	genome.wustl.edu	37	22	27026481	27026481	+	RNA	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	22	27026481	27026481	G	A	SNP	CRYBA4	ENST00000466315	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CRYBA4	HGNC	ENSG00000196431	tier1	-	-	51	0	0.00	38	13	25.49
CTNND1	0	genome.wustl.edu	37	11	57564314	57564314	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	57564314	57564314	G	C	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.806	p.S269T	0.986	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	tier1	-	-	90	0	0.00	43	37	46.25
CYP2E1	0	genome.wustl.edu	37	10	135351256	135351256	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	10	135351256	135351256	G	A	SNP	CYP2E1	ENST00000252945	human	ensembl	74_37	+1	known	missense	c.1157	p.G386D	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649	tier1	-	-	93	0	0.00	49	4	7.55
DCC	0	genome.wustl.edu	37	18	50923684	50923684	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	18	50923684	50923684	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.2695	p.D899N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	104	0	0.00	78	19	19.59
DDX50	0	genome.wustl.edu	37	10	70700818	70700818	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	10	70700818	70700818	G	A	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	silent	c.1758	p.G586	0.715	pfam_GUCT	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	tier1	-	-	92	0	0.00	25	38	60.32
DGCR6L	0	genome.wustl.edu	37	22	20307414	20307414	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	22	20307414	20307414	T	C	SNP	DGCR6L	ENST00000248879	human	ensembl	74_37	-1	known	missense	c.98	p.K33R	1.000	pfam_DGCR6	pfam_DGCR6	-	no_errors	DGCR6L	HGNC	ENSG00000128185	tier1	-	-	49	0	0.00	29	27	48.21
DIAPH2	0	genome.wustl.edu	37	X	96684668	96684668	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	X	96684668	96684668	G	T	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	silent	c.3165	p.V1055	1.000	pfam_Drf_DAD,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202	tier1	-	-	75	0	0.00	71	4	5.33
DIS3	0	genome.wustl.edu	37	13	73333933	73333933	+	Nonstop_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	13	73333933	73333933	C	A	SNP	DIS3	ENST00000377767	human	ensembl	74_37	-1	known	nonstop	c.2877	p.*959Y	0.995	NULL	smart_PIN_dom	-	no_errors	DIS3	HGNC	ENSG00000083520	tier1	-	-	38	0	0.00	12	11	47.83
DMTN	0	genome.wustl.edu	37	8	21925182	21925182	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	21925182	21925182	C	T	SNP	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	missense	c.238	p.R80C	0.997	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856	tier1	-	-	44	0	0.00	4	12	75.00
DNM1P47	0	genome.wustl.edu	37	15	102297905	102297905	+	RNA	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	15	102297905	102297905	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.876	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	34	0	0.00	11	23	67.65
DOCK3	0	genome.wustl.edu	37	3	51312516	51312516	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	51312516	51312516	G	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.2555	p.R852L	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				73	0	0.00	36	2	5.26
DPPA4	0	genome.wustl.edu	37	3	109046719	109046719	+	RNA	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	109046719	109046719	C	T	SNP	DPPA4	ENST00000463966	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPPA4	HGNC	ENSG00000121570	tier1	-	-	43	0	0.00	26	7	21.21
DPYS	0	genome.wustl.edu	37	8	105405213	105405213	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	105405213	105405213	G	T	SNP	DPYS	ENST00000351513	human	ensembl	74_37	-1	known	silent	c.1242	p.I414	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647	tier1	-	-	67	0	0.00	45	5	10.00
DTX1	0	genome.wustl.edu	37	12	113515631	113515631	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	113515631	113515631	C	G	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.662	p.S221W	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144	tier1	-	-	9	0	0.00	4	4	50.00
DUOX1	0	genome.wustl.edu	37	15	45444575	45444575	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	15	45444575	45444575	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.3285	p.F1095	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	tier1	-	-	101	0	0.00	50	41	45.05
DYNC1I2	0	genome.wustl.edu	37	2	172584836	172584836	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	172584836	172584836	G	T	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	missense	c.1165	p.V389F	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				34	0	0.00	33	4	10.81
E2F1	0	genome.wustl.edu	37	20	32264556	32264556	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	32264556	32264556	G	A	SNP	E2F1	ENST00000343380	human	ensembl	74_37	-1	known	silent	c.1296	p.L432	0.995	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	tier1	-	-	153	0	0.00	87	62	41.61
E2F1	0	genome.wustl.edu	37	20	32264679	32264679	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	32264679	32264679	G	C	SNP	E2F1	ENST00000343380	human	ensembl	74_37	-1	known	missense	c.1173	p.F391L	0.957	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	tier1	-	-	52	0	0.00	36	33	47.83
EBF4	0	genome.wustl.edu	37	20	2686231	2686231	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	2686231	2686231	G	T	SNP	EBF4	ENST00000380648	human	ensembl	74_37	+1	known	missense	c.134	p.G45V	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF4	HGNC	ENSG00000088881				48	0	0.00	33	3	8.33
EEF1G	0	genome.wustl.edu	37	11	62327763	62327763	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	62327763	62327763	G	C	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	missense	c.1171	p.L391V	1.000	pfam_Transl_elong_EF1_G_con,superfamily_Transl_elong_EF1_G_con,pfscan_Transl_elong_EF1_G_con	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772	tier1	-	-	73	0	0.00	65	12	15.58
EMC10	0	genome.wustl.edu	37	19	50985908	50985908	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	50985908	50985908	C	G	SNP	EMC10	ENST00000598585	human	ensembl	74_37	+1	putative	missense	c.1039	p.H347D	0.000	NULL	NULL	-	no_errors	EMC10	HGNC	ENSG00000161671	tier1	-	-	54	0	0.00	23	23	50.00
ENSG00000188474	0	genome.wustl.edu	37	19	12223836	12223836	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	12223836	12223836	C	A	SNP	ENSG00000188474	ENST00000339302	human	ensembl	74_37	+1	known	missense	c.1474	p.H492N	0.986	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF788	Uniprot_gn	ENSG00000188474	tier1	-	-	99	0	0.00	73	5	6.41
ENSG00000215863	0	genome.wustl.edu	37	1	147851031	147851032	+	RNA	INS	-	-	AA			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	147851031	147851032	0	AA	INS	ENSG00000215863	ENST00000381475	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-495P10.2	Clone_based_vega_gene	ENSG00000215863				10	0	0.00	5	2	28.57
ENSG00000231933	0	genome.wustl.edu	37	22	26290962	26290962	+	RNA	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	22	26290962	26290962	G	A	SNP	ENSG00000231933	ENST00000599792	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTA-125H2.2	Clone_based_vega_gene	ENSG00000231933	tier1	-	-	10	0	0.00	6	6	50.00
ENSG00000252176	0	genome.wustl.edu	37	8	39418485	39418485	+	RNA	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	39418485	39418485	A	G	SNP	ENSG00000252176	ENST00000516367	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC123767.1	Clone_based_ensembl_gene	ENSG00000252176	tier1	-	-	29	0	0.00	14	5	26.32
ENSG00000258457	0	genome.wustl.edu	37	14	23467395	23467395	+	RNA	SNP	A	A	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	23467395	23467395	A	C	SNP	ENSG00000258457	ENST00000555294	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.198	-	-	-	no_errors	RP11-298I3.4	Clone_based_vega_gene	ENSG00000258457	tier1	-	-	9	0	0.00	8	4	33.33
ENSG00000261008	0	genome.wustl.edu	37	16	72460388	72460388	+	RNA	DEL	A	A	-			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	16	72460388	72460388	A	-	DEL	ENSG00000261008	ENST00000561611	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.967	-	-	-	no_errors	AC004158.2	Clone_based_vega_gene	ENSG00000261008	tier1			20	0	0.00	11	2	15.38
EPAS1	0	genome.wustl.edu	37	2	46587838	46587838	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	46587838	46587838	G	A	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.516	p.M172I	1.000	superfamily_PAS	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	tier1	-	-	46	0	0.00	37	15	28.85
EPPK1	0	genome.wustl.edu	37	8	144940622	144940622	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	144940622	144940622	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.6800	p.A2267V	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	tier1	-	-	70	0	0.00	94	18	15.38
ESRP2	0	genome.wustl.edu	37	16	68265264	68265264	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	16	68265264	68265264	C	T	SNP	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	missense	c.1558	p.D520N	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	tier1	-	-	49	0	0.00	34	28	45.16
FAM78A	0	genome.wustl.edu	37	9	134151335	134151335	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	134151335	134151335	G	A	SNP	FAM78A	ENST00000372271	human	ensembl	74_37	-1	known	missense	c.232	p.P78S	1.000	NULL	NULL	-	no_errors	FAM78A	HGNC	ENSG00000126882	tier1	-	-	67	0	0.00	66	4	5.63
FERMT3	0	genome.wustl.edu	37	11	63978612	63978612	+	Silent	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	63978612	63978612	C	G	SNP	FERMT3	ENST00000279227	human	ensembl	74_37	+1	known	silent	c.483	p.L161	0.981	smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781				23	0	0.00	19	3	13.64
FRG1B	0	genome.wustl.edu	37	20	29631557	29631557	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	29631557	29631557	A	G	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.353	p.K118R	1.000	pfam_FRG1	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				47	0	0.00	55	4	6.78
GGA3	0	genome.wustl.edu	37	17	73240711	73240711	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	17	73240711	73240711	C	T	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.289	p.V97I	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447	tier1	-	-	111	0	0.00	24	44	64.71
GOLGA8T	0	genome.wustl.edu	37	15	30429105	30429105	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	15	30429105	30429105	C	T	SNP	GOLGA8T	ENST00000569052	human	ensembl	74_37	+1	novel	missense	c.85	p.P29S	0.190	NULL	NULL	-	no_errors	GOLGA8T	HGNC	ENSG00000261247	tier1	-	-	38	0	0.00	36	9	20.00
GPATCH1	0	genome.wustl.edu	37	19	33609992	33609992	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	33609992	33609992	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	silent	c.2490	p.F830	0.996	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650	tier1	-	-	38	0	0.00	25	13	34.21
GTF3C3	0	genome.wustl.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	197657782	197657782	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	silent	c.309	p.E103	0.968	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				40	0	0.00	35	3	7.89
HDAC7	0	genome.wustl.edu	37	12	48189393	48189393	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	48189393	48189393	C	T	SNP	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	missense	c.1115	p.G372D	0.017	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273	tier1	-	-	121	0	0.00	59	4	6.35
HIST1H3G	0	genome.wustl.edu	37	6	26271357	26271357	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	26271357	26271357	G	A	SNP	HIST1H3G	ENST00000305910	human	ensembl	74_37	-1	known	nonsense	c.256	p.Q86*	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	tier1	-	-	111	0	0.00	79	53	40.15
HIVEP1	0	genome.wustl.edu	37	6	12164527	12164527	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	12164527	12164527	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.7990	p.L2664	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	tier1	-	-	30	0	0.00	19	8	29.63
HNRNPLL	0	genome.wustl.edu	37	2	38796385	38796385	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	38796385	38796385	T	A	SNP	HNRNPLL	ENST00000449105	human	ensembl	74_37	-1	known	missense	c.1306	p.N436Y	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPLL	HGNC	ENSG00000143889	tier1	-	-	45	0	0.00	34	22	39.29
IRGQ	0	genome.wustl.edu	37	19	44096738	44096738	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	44096738	44096738	C	T	SNP	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	missense	c.1312	p.G438R	0.290	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378	tier1	-	-	16	0	0.00	15	7	31.82
ITSN1	0	genome.wustl.edu	37	21	35257404	35257404	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	21	35257404	35257404	A	G	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	missense	c.4736	p.K1579R	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				61	0	0.00	50	3	5.66
KIAA1009	0	genome.wustl.edu	37	6	84872950	84872950	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	84872950	84872950	T	G	SNP	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	missense	c.2425	p.K809Q	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315	tier1	-	-	130	0	0.00	84	9	9.57
KIAA2018	0	genome.wustl.edu	37	3	113379264	113379264	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	113379264	113379264	C	A	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.1265	p.R422L	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1	-	-	65	0	0.00	17	25	59.52
KLK15	0	genome.wustl.edu	37	19	51330300	51330300	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	51330300	51330300	G	A	SNP	KLK15	ENST00000598239	human	ensembl	74_37	-1	known	silent	c.315	p.N105	0.449	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	tier1	-	-	55	0	0.00	30	14	31.82
KMT2D	0	genome.wustl.edu	37	12	49427679	49427679	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	49427679	49427679	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.10809	p.Q3603	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				51	0	0.00	30	2	6.25
KRTAP20-1	0	genome.wustl.edu	37	21	31988818	31988818	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	21	31988818	31988818	G	T	SNP	KRTAP20-1	ENST00000334664	human	ensembl	74_37	+1	known	silent	c.45	p.G15	0.880	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP20-1	HGNC	ENSG00000244624	tier1	-	-	191	0	0.00	45	97	68.31
LGR6	0	genome.wustl.edu	37	1	202245493	202245493	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	202245493	202245493	C	T	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.488	p.S163F	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	tier1	-	-	32	0	0.00	45	18	28.57
LOC101927209	0	genome.wustl.edu	37	1	142690883	142690883	+	RNA	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	142690883	142690883	G	A	SNP	LOC101927209	ENST00000446205	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-417J8.3	Clone_based_vega_gene	ENSG00000230880	tier1	-	-	11	0	0.00	1	9	90.00
LOC101927599	0	genome.wustl.edu	37	19	37068396	37068397	+	RNA	INS	-	-	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	37068396	37068397	-	T	INS	LOC101927599	ENST00000448373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.110:0.124	-	-	-	no_errors	AC092295.7	Clone_based_vega_gene	ENSG00000233527	tier1			10	0	0.00	11	3	21.43
LOC101927599	0	genome.wustl.edu	37	19	37068397	37068397	+	RNA	DEL	T	T	-			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	37068397	37068397	T	-	DEL	LOC101927599	ENST00000448373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	AC092295.7	Clone_based_vega_gene	ENSG00000233527	tier1			11	0	0.00	11	4	26.67
LOC728715	0	genome.wustl.edu	37	12	9727444	9727444	+	RNA	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	9727444	9727444	G	T	SNP	LOC728715	ENST00000520314	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-726G1.1	Clone_based_vega_gene	ENSG00000214776				106	0	0.00	18	3	14.29
LPPR3	0	genome.wustl.edu	37	19	815759	815759	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	815759	815759	G	T	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	missense	c.168	p.D56E	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				74	0	0.00	70	4	5.41
LRFN5	0	genome.wustl.edu	37	14	42356585	42356585	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	42356585	42356585	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.757	p.R253C	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				86	0	0.00	69	4	5.48
LRTOMT	0	genome.wustl.edu	37	11	71806129	71806129	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	71806129	71806129	G	C	SNP	LRTOMT	ENST00000307198	human	ensembl	74_37	+1	known	missense	c.21	p.K7N	1.000	NULL	pfam_O-MeTrfase_3	-	no_errors	LRTOMT	HGNC	ENSG00000184154	tier1	-	-	60	0	0.00	47	10	17.54
LTBP4	0	genome.wustl.edu	37	19	41111350	41111350	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	41111350	41111350	A	G	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	missense	c.683	p.Q228R	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	tier1	-	-	151	0	0.00	67	39	36.79
MAML3	0	genome.wustl.edu	37	4	140811078	140811078	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	4	140811078	140811078	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	silent	c.1512	p.Q504	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				48	0	0.00	33	2	5.71
MGAM	0	genome.wustl.edu	37	7	141708393	141708393	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	141708393	141708393	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.215	p.T72I	0.008	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	129	0	0.00	96	59	38.06
MORC3	0	genome.wustl.edu	37	21	37709264	37709264	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	21	37709264	37709264	G	T	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.205	p.G69W	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	tier1	-	-	133	0	0.00	70	4	5.41
MTG2	0	genome.wustl.edu	37	20	60775767	60775767	+	Silent	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	60775767	60775767	C	A	SNP	MTG2	ENST00000370823	human	ensembl	74_37	+1	known	silent	c.855	p.G285	0.161	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	MTG2	HGNC	ENSG00000101181	tier1	-	-	43	0	0.00	25	23	47.92
MUC16	0	genome.wustl.edu	37	19	9064876	9064876	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	9064876	9064876	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.22570	p.P7524T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	154	0	0.00	149	13	7.98
MYEOV	0	genome.wustl.edu	37	11	69063218	69063218	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	69063218	69063218	G	T	SNP	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	missense	c.301	p.A101S	0.001	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				68	0	0.00	45	4	7.84
MYO6	0	genome.wustl.edu	37	6	76591508	76591508	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	76591508	76591508	C	G	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.2389	p.Q797E	1.000	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	tier1	-	-	118	0	0.00	44	35	44.30
MYO9B	0	genome.wustl.edu	37	19	17264847	17264847	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	17264847	17264847	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	nonsense	c.1069	p.Q357*	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	tier1	-	-	63	0	0.00	63	4	5.97
NBPF12	0	genome.wustl.edu	37	1	146398500	146398500	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	146398500	146398500	C	T	SNP	NBPF12	ENST00000446760	human	ensembl	74_37	+1	known	silent	c.486	p.L162	0.041	NULL	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275	tier1	-	-	338	0	0.00	221	146	39.67
NFE2L2	0	genome.wustl.edu	37	2	178098953	178098953	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	178098953	178098953	C	G	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.92	p.G31A	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	tier1	-	-	56	0	0.00	24	22	47.83
NOP9	0	genome.wustl.edu	37	14	24771499	24771499	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	24771499	24771499	G	A	SNP	NOP9	ENST00000267425	human	ensembl	74_37	+1	known	missense	c.1012	p.V338M	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	-	no_errors	NOP9	HGNC	ENSG00000196943	tier1	-	-	87	0	0.00	39	36	48.00
NOVA2	0	genome.wustl.edu	37	19	46443970	46443970	+	Silent	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	46443970	46443970	G	C	SNP	NOVA2	ENST00000263257	human	ensembl	74_37	-1	known	silent	c.630	p.L210	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967	tier1	-	-	52	0	0.00	42	20	32.26
NRD1	0	genome.wustl.edu	37	1	52279933	52279933	+	RNA	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	52279933	52279933	T	A	SNP	NRD1	ENST00000483007	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.896	-	-	-	no_errors	NRD1	HGNC	ENSG00000078618	tier1	-	-	11	0	0.00	6	4	40.00
NUP188	0	genome.wustl.edu	37	9	131768007	131768007	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	131768007	131768007	C	T	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	silent	c.4821	p.F1607	0.097	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	tier1	-	-	112	0	0.00	48	39	44.83
OMA1	0	genome.wustl.edu	37	1	59004813	59004813	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	59004813	59004813	C	A	SNP	OMA1	ENST00000371226	human	ensembl	74_37	-1	known	nonsense	c.154	p.G52*	0.044	NULL	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	tier1	-	-	48	0	0.00	9	31	77.50
OR13C3	0	genome.wustl.edu	37	9	107298339	107298339	+	Silent	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	107298339	107298339	G	C	SNP	OR13C3	ENST00000374781	human	ensembl	74_37	-1	known	silent	c.756	p.L252	0.072	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C3	HGNC	ENSG00000204246	tier1	-	-	65	0	0.00	55	26	32.10
OR1B1	0	genome.wustl.edu	37	9	125391770	125391770	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	125391770	125391770	C	A	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.45	p.L15F	0.004	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				55	0	0.00	57	4	6.56
OR2AT4	0	genome.wustl.edu	37	11	74800003	74800003	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	74800003	74800003	G	T	SNP	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	silent	c.756	p.V252	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561	tier1	-	-	46	0	0.00	45	18	28.57
ORC2	0	genome.wustl.edu	37	2	201790582	201790582	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	201790582	201790582	C	A	SNP	ORC2	ENST00000234296	human	ensembl	74_37	-1	known	missense	c.1124	p.W375L	0.999	pfam_ORC2	pfam_ORC2	-	no_errors	ORC2	HGNC	ENSG00000115942				49	0	0.00	34	2	5.56
OSBPL5	0	genome.wustl.edu	37	11	3150332	3150332	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	3150332	3150332	G	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	missense	c.47	p.P16H	0.116	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	tier1	-	-	75	0	0.00	69	4	5.48
PCDH11X	0	genome.wustl.edu	37	X	91518126	91518126	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	X	91518126	91518126	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.3128	p.G1043E	0.243	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	tier1	-	-	138	0	0.00	35	97	73.48
PHKA1	0	genome.wustl.edu	37	X	71876026	71876026	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	X	71876026	71876026	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.985	p.P329S	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				35	0	0.00	38	4	9.52
PIGT	0	genome.wustl.edu	37	20	44054363	44054363	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	44054363	44054363	A	G	SNP	PIGT	ENST00000279036	human	ensembl	74_37	+1	known	missense	c.1634	p.N545S	1.000	pfam_PIG-T	pfam_PIG-T	-	no_errors	PIGT	HGNC	ENSG00000124155	tier1	-	-	88	0	0.00	62	40	39.22
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs104886003	-	124	0	0.00	164	109	39.93
PIRT	0	genome.wustl.edu	37	17	10728609	10728609	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	17	10728609	10728609	C	T	SNP	PIRT	ENST00000580256	human	ensembl	74_37	-1	known	silent	c.354	p.Q118	1.000	NULL	NULL	-	no_errors	PIRT	HGNC	ENSG00000233670	tier1	-	-	91	0	0.00	59	28	32.18
PKD1	0	genome.wustl.edu	37	16	2160143	2160143	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	16	2160143	2160143	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.5025	p.A1675	0.050	pfam_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	tier1	-	-	150	0	0.00	49	72	59.50
PKN2	0	genome.wustl.edu	37	1	89250469	89250469	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	89250469	89250469	G	A	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.1133	p.G378E	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	tier1	-	-	104	0	0.00	63	8	11.27
PLXNA4	0	genome.wustl.edu	37	7	131908323	131908323	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	131908323	131908323	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.2060	p.T687I	0.909	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866	tier1	-	-	88	0	0.00	49	40	44.94
PNMA1	0	genome.wustl.edu	37	14	74179414	74179414	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	74179414	74179414	A	T	SNP	PNMA1	ENST00000316836	human	ensembl	74_37	-1	known	missense	c.929	p.L310H	1.000	NULL	superfamily_Globin-like	-	no_errors	PNMA1	HGNC	ENSG00000176903	tier1	-	-	63	0	0.00	25	35	58.33
POSTN	0	genome.wustl.edu	37	13	38166244	38166244	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	13	38166244	38166244	G	C	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	missense	c.276	p.C92W	0.971	superfamily_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	tier1	-	-	100	0	0.00	90	41	31.30
PPP2R5B	0	genome.wustl.edu	37	11	64695604	64695604	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	64695604	64695604	T	C	SNP	PPP2R5B	ENST00000164133	human	ensembl	74_37	+1	known	missense	c.565	p.Y189H	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	tier1	-	-	110	0	0.00	39	41	51.25
PRKD2	0	genome.wustl.edu	37	19	47197277	47197277	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	47197277	47197277	G	A	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	silent	c.1431	p.F477	0.953	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287	tier1	-	-	76	0	0.00	31	27	46.55
PRL	0	genome.wustl.edu	37	6	22287656	22287656	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	22287656	22287656	C	T	SNP	PRL	ENST00000306482	human	ensembl	74_37	-1	known	missense	c.659	p.R220Q	0.999	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	PRL	HGNC	ENSG00000172179	tier1	-	-	72	0	0.00	31	18	36.73
PSD	0	genome.wustl.edu	37	10	104176706	104176706	+	Silent	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	10	104176706	104176706	C	T	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	silent	c.90	p.P30	0.001	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	tier1	-	-	59	0	0.00	30	4	11.76
PTPRZ1	0	genome.wustl.edu	37	7	121650679	121650679	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	121650679	121650679	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.1579	p.P527S	0.267	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	tier1	-	-	76	0	0.00	67	4	5.63
PXMP4	0	genome.wustl.edu	37	20	32307929	32307929	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	32307929	32307929	C	T	SNP	PXMP4	ENST00000409299	human	ensembl	74_37	-1	known	missense	c.85	p.V29M	0.015	pirsf_Pmp4	pirsf_Pmp4	-	no_errors	PXMP4	HGNC	ENSG00000101417	tier1	-	-	180	0	0.00	159	88	35.63
RHEB	0	genome.wustl.edu	37	7	151167700	151167700	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	151167700	151167700	G	T	SNP	RHEB	ENST00000262187	human	ensembl	74_37	-1	known	missense	c.419	p.S140Y	1.000	pfam_Small_GTPase,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHEB	HGNC	ENSG00000106615				55	0	0.00	65	4	5.80
ROCK2	0	genome.wustl.edu	37	2	11332666	11332666	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	11332666	11332666	G	A	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	missense	c.3860	p.P1287L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	tier1	-	-	72	0	0.00	57	37	39.36
RPL13AP3	0	genome.wustl.edu	37	14	56233183	56233183	+	RNA	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	56233183	56233183	C	A	SNP	RPL13AP3	ENST00000494676	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13AP3	HGNC	ENSG00000177350	tier1	-	-	83	0	0.00	61	7	10.29
SAMM50	0	genome.wustl.edu	37	22	44372658	44372658	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	22	44372658	44372658	C	G	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	missense	c.806	p.S269C	1.000	pfam_Bac_surfAg_D15	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347	tier1	-	-	102	0	0.00	48	34	41.46
SCN1A	0	genome.wustl.edu	37	2	166900237	166900237	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	166900237	166900237	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.1985	p.S662L	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	tier1	-	-	106	0	0.00	52	51	49.51
SDHA	0	genome.wustl.edu	37	5	233760	233760	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	5	233760	233760	G	A	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.1064	p.R355K	1.000	pfam_FAD_bind_dom,superfamily_Succ_DH/fumarate_Rdtase_cat,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578	tier1	-	-	152	0	0.00	112	170	60.28
SECISBP2	0	genome.wustl.edu	37	9	91940893	91940893	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	91940893	91940893	A	G	SNP	SECISBP2	ENST00000375807	human	ensembl	74_37	+1	known	missense	c.514	p.I172V	0.001	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	tier1	-	-	98	0	0.00	22	38	63.33
SF1	0	genome.wustl.edu	37	11	64535684	64535684	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	64535684	64535684	C	-	DEL	SF1	ENST00000377390	human	ensembl	74_37	-1	known	frame_shift_del	c.962	p.G321fs	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	tier1			46	0	0.00	28	3	9.68
SIPA1	0	genome.wustl.edu	37	11	65417519	65417519	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	65417519	65417519	G	A	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	missense	c.2845	p.E949K	1.000	NULL	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445	tier1	-	-	115	0	0.00	81	25	23.36
SIPA1	0	genome.wustl.edu	37	11	65417876	65417876	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	65417876	65417876	G	C	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	missense	c.2908	p.E970Q	0.778	NULL	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445	tier1	-	-	94	0	0.00	72	20	21.74
SLC22A24	0	genome.wustl.edu	37	11	62911100	62911100	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	11	62911100	62911100	A	G	SNP	SLC22A24	ENST00000326192	human	ensembl	74_37	-1	known	missense	c.152	p.V51A	0.950	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A24	HGNC	ENSG00000197658				71	0	0.00	65	4	5.71
SLC32A1	0	genome.wustl.edu	37	20	37356902	37356902	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	37356902	37356902	G	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1198	p.A400S	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				58	0	0.00	35	3	7.89
SLC4A5	0	genome.wustl.edu	37	2	74531762	74531762	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	74531762	74531762	T	A	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	missense	c.125	p.Q42L	0.229	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	tier1	-	-	122	0	0.00	81	43	34.68
SON	0	genome.wustl.edu	37	21	34922690	34922690	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	21	34922690	34922690	G	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.1153	p.G385W	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140	tier1	-	-	102	0	0.00	26	47	64.38
SOX7	0	genome.wustl.edu	37	8	10583327	10583327	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	8	10583327	10583327	G	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	missense	c.1244	p.T415K	0.000	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				87	0	0.00	45	3	6.25
SPATA18	0	genome.wustl.edu	37	4	52926601	52926601	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	4	52926601	52926601	A	G	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.104	p.Q35R	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	tier1	-	-	136	0	0.00	34	45	56.96
SPATA25	0	genome.wustl.edu	37	20	44515296	44515296	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	44515296	44515296	G	C	SNP	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	missense	c.544	p.Q182E	1.000	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634	tier1	-	-	71	0	0.00	43	35	44.87
SPATA31C1	0	genome.wustl.edu	37	9	90534190	90534191	+	RNA	INS	-	-	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	90534190	90534191	-	C	INS	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012:0.016	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246	tier1			17	0	0.00	13	6	31.58
SRPK3	0	genome.wustl.edu	37	X	153047664	153047664	+	Splice_Site	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	X	153047664	153047664	G	A	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	splice_site	c.475+1	e5+1	1.000	-	-	-	no_errors	SRPK3	HGNC	ENSG00000184343				53	0	0.00	44	5	10.20
STAT6	0	genome.wustl.edu	37	12	57490895	57490895	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	57490895	57490895	G	-	DEL	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	frame_shift_del	c.2181	p.S728fs	0.002	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	tier1			34	0	0.00	24	2	7.69
SUN5	0	genome.wustl.edu	37	20	31584143	31584143	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	20	31584143	31584143	G	A	SNP	SUN5	ENST00000356173	human	ensembl	74_37	-1	known	silent	c.412	p.L138	0.999	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	tier1	-	-	93	0	0.00	60	51	45.95
SYT1	0	genome.wustl.edu	37	12	79689885	79689885	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	79689885	79689885	G	T	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.511	p.A171S	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				60	0	0.00	31	2	6.06
TBXAS1	0	genome.wustl.edu	37	7	139653225	139653225	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	139653225	139653225	C	T	SNP	TBXAS1	ENST00000416849	human	ensembl	74_37	+1	known	missense	c.650	p.A217V	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				64	0	0.00	50	3	5.66
TECTB	0	genome.wustl.edu	37	10	114063043	114063043	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	10	114063043	114063043	G	A	SNP	TECTB	ENST00000369422	human	ensembl	74_37	+1	known	missense	c.963	p.M321I	0.988	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TECTB	HGNC	ENSG00000119913	tier1	-	-	149	0	0.00	42	51	54.84
TMEM182	0	genome.wustl.edu	37	2	103414392	103414392	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	103414392	103414392	C	G	SNP	TMEM182	ENST00000412401	human	ensembl	74_37	+1	known	missense	c.402	p.I134M	1.000	NULL	NULL	-	no_errors	TMEM182	HGNC	ENSG00000170417	tier1	-	-	56	0	0.00	46	30	39.47
TMEM52	0	genome.wustl.edu	37	1	1849758	1849758	+	Silent	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	1849758	1849758	G	T	SNP	TMEM52	ENST00000310991	human	ensembl	74_37	-1	known	silent	c.283	p.R95	0.000	NULL	NULL	-	no_errors	TMEM52	HGNC	ENSG00000178821				64	0	0.00	38	3	7.32
TP53	0	genome.wustl.edu	37	17	7578266	7578266	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	17	7578266	7578266	T	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.583	p.I195F	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	122	0	0.00	20	105	84.00
TRIP11	0	genome.wustl.edu	37	14	92470509	92470509	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	92470509	92470509	T	A	SNP	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	missense	c.3811	p.I1271F	1.000	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	tier1	-	-	78	0	0.00	50	24	32.43
TRMT10A	0	genome.wustl.edu	37	4	100472105	100472105	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	4	100472105	100472105	C	T	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.688	p.A230T	1.000	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331	tier1	-	-	98	0	0.00	54	4	6.90
TWISTNB	0	genome.wustl.edu	37	7	19748587	19748587	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	7	19748587	19748587	G	C	SNP	TWISTNB	ENST00000222567	human	ensembl	74_37	-1	known	missense	c.53	p.S18C	0.001	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849	tier1	-	-	36	0	0.00	24	13	35.14
UNC79	0	genome.wustl.edu	37	14	94004395	94004395	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	14	94004395	94004395	C	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.1183	p.R395S	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	51	0	0.00	51	11	17.74
USH2A	0	genome.wustl.edu	37	1	215987082	215987082	+	Silent	SNP	T	T	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	215987082	215987082	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.9735	p.L3245	0.008	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	155	0	0.00	118	54	31.40
USHBP1	0	genome.wustl.edu	37	19	17373483	17373483	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	17373483	17373483	C	A	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.520	p.A174S	0.000	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	tier1	-	-	90	0	0.00	92	13	12.38
UTRN	0	genome.wustl.edu	37	6	144844281	144844281	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	6	144844281	144844281	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.5863	p.A1955T	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818	tier1	-	-	54	0	0.00	38	4	9.52
VANGL2	0	genome.wustl.edu	37	1	160389226	160389226	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	160389226	160389226	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	silent	c.627	p.E209	0.995	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	tier1	-	-	38	0	0.00	43	16	27.12
VPS13D	0	genome.wustl.edu	37	1	12569367	12569367	+	RNA	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	12569367	12569367	G	T	SNP	VPS13D	ENST00000496628	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707	tier1	-	-	127	0	0.00	76	5	6.10
WDR81	0	genome.wustl.edu	37	17	1631342	1631342	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	17	1631342	1631342	A	C	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3089	p.E1030A	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				31	0	0.00	11	4	26.67
WDR81	0	genome.wustl.edu	37	17	1631343	1631343	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	17	1631343	1631343	G	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3090	p.E1030D	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				32	0	0.00	11	5	31.25
YOD1	0	genome.wustl.edu	37	1	207222508	207222510	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	1	207222508	207222510	CTG	-	DEL	YOD1	ENST00000315927	human	ensembl	74_37	-1	known	in_frame_del	c.904_902	p.A301in_frame_del	1.000:0.991:1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667	tier1			53	0	0.00	29	28	49.12
ZAP70	0	genome.wustl.edu	37	2	98340795	98340795	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	98340795	98340795	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.296	p.R99H	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				16	0	0.00	9	3	25.00
ZFC3H1	0	genome.wustl.edu	37	12	72057336	72057336	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	12	72057336	72057336	C	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.55	p.E19K	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	tier1	-	-	55	0	0.00	18	24	57.14
ZFR	0	genome.wustl.edu	37	5	32407029	32407029	+	Silent	SNP	A	A	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	5	32407029	32407029	A	T	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	silent	c.882	p.A294	0.601	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				31	0	0.00	55	3	5.17
ZNF385B	0	genome.wustl.edu	37	2	180409561	180409561	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	2	180409561	180409561	A	T	SNP	ZNF385B	ENST00000410066	human	ensembl	74_37	-1	known	missense	c.389	p.F130Y	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331	tier1	-	-	77	0	0.00	53	18	25.35
ZNF618	0	genome.wustl.edu	37	9	116811401	116811401	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	9	116811401	116811401	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.1819	p.V607M	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	tier1	-	-	20	0	0.00	18	9	33.33
ZNF66	0	genome.wustl.edu	37	19	20989009	20989009	+	Silent	SNP	T	T	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	20989009	20989009	T	C	SNP	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	silent	c.603	p.Y201	0.022	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229	tier1	-	-	122	0	0.00	109	6	5.22
ZNF66	0	genome.wustl.edu	37	19	20989248	20989248	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	20989248	20989248	G	C	SNP	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	missense	c.842	p.G281A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229	tier1	-	-	84	0	0.00	64	28	30.43
ZNF785	0	genome.wustl.edu	37	16	30594220	30594220	+	Silent	SNP	G	G	A			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	16	30594220	30594220	G	A	SNP	ZNF785	ENST00000395216	human	ensembl	74_37	-1	known	silent	c.879	p.F293	0.305	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162	tier1	-	-	164	0	0.00	153	14	8.38
ZNF99	0	genome.wustl.edu	37	19	22942112	22942112	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A7HW-01A-22D-A351-09	TCGA-LN-A7HW-10A-01D-A351-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	631fa9c2-1da3-4b45-9c05-e05984c0f207	df052aa8-03bc-4880-935e-147aa04bae2f	19	22942112	22942112	A	T	SNP	ZNF99	ENST00000596209	human	ensembl	74_37	-1	novel	missense	c.599	p.I200N	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	-	-	86	0	0.00	44	31	41.33
