Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AASDH	0	genome.wustl.edu	37	4	57220226	57220226	+	Silent	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	57220226	57220226	A	G	SNP	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	silent	c.1362	p.L454	0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				65	0	0.00	56	4	6.67
ACACA	0	genome.wustl.edu	37	17	35581952	35581952	+	Silent	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	35581952	35581952	A	T	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	silent	c.3435	p.I1145	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	tier1	-	-	70	0	0.00	58	4	6.45
ACSL3	0	genome.wustl.edu	37	2	223791822	223791822	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	223791822	223791822	G	T	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	missense	c.1380	p.Q460H	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983	tier1	-	-	56	0	0.00	19	20	51.28
ACTB	0	genome.wustl.edu	37	7	5568131	5568131	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	5568131	5568131	C	T	SNP	ACTB	ENST00000331789	human	ensembl	74_37	-1	known	missense	c.583	p.E195K	0.993	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTB	HGNC	ENSG00000075624	tier1	-	-	102	0	0.00	61	24	28.24
ACY1	0	genome.wustl.edu	37	3	52020476	52020476	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	52020476	52020476	G	T	SNP	ACY1	ENST00000458031	human	ensembl	74_37	+1	known	missense	c.752	p.R251L	0.999	pfam_Peptidase_M20,tigrfam_N-acyl_aa_amidohydrolase	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,tigrfam_N-acyl_aa_amidohydrolase	-	no_errors	ACY1	HGNC	ENSG00000243989				107	0	0.00	44	3	6.38
ADAM18	0	genome.wustl.edu	37	8	39466616	39466616	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	39466616	39466616	C	A	SNP	ADAM18	ENST00000265707	human	ensembl	74_37	+1	known	missense	c.244	p.H82N	0.006	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619	tier1	-	-	34	0	0.00	14	10	41.67
ADAMTS18	0	genome.wustl.edu	37	16	77327044	77327044	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	77327044	77327044	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	nonsense	c.3118	p.Q1040*	0.993	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				34	0	0.00	36	3	7.69
ADAMTS20	0	genome.wustl.edu	37	12	43858461	43858461	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	43858461	43858461	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.1442	p.S481L	0.014	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				75	0	0.00	38	2	5.00
ADNP2	0	genome.wustl.edu	37	18	77896383	77896383	+	Silent	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	77896383	77896383	T	C	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.3087	p.P1029	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544	tier1	-	-	121	0	0.00	47	4	7.84
AGO2	0	genome.wustl.edu	37	8	141561493	141561493	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	141561493	141561493	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.1312	p.R438W	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				95	0	0.00	66	4	5.71
AHNAK2	0	genome.wustl.edu	37	14	105414400	105414400	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	105414400	105414400	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7388	p.A2463V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				121	0	0.00	76	4	5.00
AKAP6	0	genome.wustl.edu	37	14	33293482	33293482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	33293482	33293482	T	-	DEL	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	frame_shift_del	c.6463	p.F2156fs	0.998	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	tier1			17	0	0.00	21	2	8.70
ALG12	0	genome.wustl.edu	37	22	50303571	50303571	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	50303571	50303571	T	C	SNP	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	missense	c.635	p.H212R	0.497	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				138	0	0.00	74	4	5.06
AMMECR1L	0	genome.wustl.edu	37	2	128624513	128624513	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	128624513	128624513	G	A	SNP	AMMECR1L	ENST00000272647	human	ensembl	74_37	-1	known	missense	c.782	p.P261L	1.000	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1L	HGNC	ENSG00000144233				107	0	0.00	71	5	6.49
ANGPTL2	0	genome.wustl.edu	37	9	129854026	129854026	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	129854026	129854026	C	T	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	missense	c.1205	p.G402D	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859	tier1	-	-	57	0	0.00	29	4	12.12
AOX1	0	genome.wustl.edu	37	2	201467012	201467012	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	201467012	201467012	C	A	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.442	p.L148M	0.998	pfam_2Fe-2S-bd,superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	tier1	-	-	73	0	0.00	20	4	16.67
AQP12B	0	genome.wustl.edu	37	2	241615877	241615877	+	RNA	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	241615877	241615877	C	T	SNP	AQP12B	ENST00000459806	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	AQP12B	HGNC	ENSG00000185176	tier1	-	-	20	0	0.00	9	3	25.00
ARHGEF16	0	genome.wustl.edu	37	1	3389659	3389659	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	3389659	3389659	A	T	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.1040	p.E347V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762	tier1	-	-	42	0	0.00	11	23	67.65
ARHGEF33	0	genome.wustl.edu	37	2	39164609	39164609	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	39164609	39164609	C	T	SNP	ARHGEF33	ENST00000398800	human	ensembl	74_37	+1	known	silent	c.699	p.Y233	0.998	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_Prefoldin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF33	HGNC	ENSG00000214694	tier1	-	-	80	0	0.00	48	4	7.69
ATAD5	0	genome.wustl.edu	37	17	29161257	29161257	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	29161257	29161257	T	-	DEL	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	frame_shift_del	c.158	p.F54fs	0.997	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	tier1			53	0	0.00	32	3	8.57
ATG7	0	genome.wustl.edu	37	3	11389409	11389409	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	11389409	11389409	C	T	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.1184	p.P395L	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548	tier1	-	-	43	0	0.00	13	3	18.75
B4GALT7	0	genome.wustl.edu	37	5	177036004	177036004	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	177036004	177036004	G	T	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	+1	known	missense	c.817	p.A273S	0.977	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT7	HGNC	ENSG00000027847				65	0	0.00	29	2	6.45
BANK1	0	genome.wustl.edu	37	4	102942701	102942701	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	102942701	102942701	G	C	SNP	BANK1	ENST00000322953	human	ensembl	74_37	+1	known	missense	c.1237	p.E413Q	0.991	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064	tier1	-	-	43	0	0.00	33	15	31.25
BCAS3	0	genome.wustl.edu	37	17	59067400	59067400	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	59067400	59067400	C	T	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	silent	c.1290	p.H430	0.918	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				90	0	0.00	70	4	5.41
BHLHE41	0	genome.wustl.edu	37	12	26277481	26277481	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	26277481	26277481	T	G	SNP	BHLHE41	ENST00000242728	human	ensembl	74_37	-1	known	missense	c.97	p.K33Q	1.000	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	BHLHE41	HGNC	ENSG00000123095				78	0	0.00	49	4	7.55
BRAP	0	genome.wustl.edu	37	12	112093423	112093423	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	112093423	112093423	G	T	SNP	BRAP	ENST00000419234	human	ensembl	74_37	-1	known	silent	c.1258	p.R420	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234				68	0	0.00	36	3	7.69
BRWD1	0	genome.wustl.edu	37	21	40571465	40571465	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	21	40571465	40571465	C	T	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.4877	p.R1626Q	0.986	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				64	0	0.00	27	2	6.90
C10orf67	0	genome.wustl.edu	37	10	23622110	23622110	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	23622110	23622110	G	T	SNP	C10orf67	ENST00000323327	human	ensembl	74_37	-1	known	missense	c.211	p.L71I	0.001	NULL	NULL	-	no_errors	C10orf67	HGNC	ENSG00000179133				65	0	0.00	30	2	6.25
C14orf1	0	genome.wustl.edu	37	14	76117945	76117945	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	76117945	76117945	G	A	SNP	C14orf1	ENST00000256319	human	ensembl	74_37	-1	known	missense	c.376	p.R126W	1.000	NULL	pfam_Erg28	-	no_errors	C14orf1	HGNC	ENSG00000133935				70	0	0.00	33	2	5.71
C5	0	genome.wustl.edu	37	9	123759888	123759888	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	123759888	123759888	G	T	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.2727	p.N909K	0.140	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804	tier1	-	-	67	0	0.00	70	4	5.41
C9orf169	0	genome.wustl.edu	37	9	140120472	140120472	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	140120472	140120472	C	A	SNP	C9orf169	ENST00000359069	human	ensembl	74_37	+1	known	nonsense	c.399	p.C133*	1.000	pfam_UPF0574	pfam_UPF0574	-	no_errors	C9orf169	HGNC	ENSG00000197191				51	0	0.00	27	4	12.90
CASD1	0	genome.wustl.edu	37	7	94167097	94167097	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	94167097	94167097	G	A	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	missense	c.1157	p.R386H	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				50	0	0.00	32	2	5.88
CD109	0	genome.wustl.edu	37	6	74519854	74519854	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	74519854	74519854	T	C	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	missense	c.3503	p.L1168P	0.992	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				33	0	0.00	18	2	10.00
CDCA7L	0	genome.wustl.edu	37	7	21945184	21945184	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	21945184	21945184	G	A	SNP	CDCA7L	ENST00000406877	human	ensembl	74_37	-1	known	silent	c.987	p.T329	0.646	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649				42	0	0.00	28	2	6.67
CDH15	0	genome.wustl.edu	37	16	89259946	89259946	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	89259946	89259946	G	T	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.1924	p.G642C	0.483	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				71	0	0.00	38	2	5.00
CDHR4	0	genome.wustl.edu	37	3	49834363	49834363	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	49834363	49834363	C	T	SNP	CDHR4	ENST00000412678	human	ensembl	74_37	-1	known	missense	c.598	p.A200T	0.841	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492	tier1	-	-	103	0	0.00	40	4	9.09
CDS2	0	genome.wustl.edu	37	20	5107779	5107779	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	20	5107779	5107779	C	T	SNP	CDS2	ENST00000460006	human	ensembl	74_37	+1	known	missense	c.41	p.A14V	0.020	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	tier1	-	-	22	0	0.00	17	4	19.05
CELA2B	0	genome.wustl.edu	37	1	15807634	15807634	+	Silent	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	15807634	15807634	C	A	SNP	CELA2B	ENST00000375910	human	ensembl	74_37	+1	known	silent	c.171	p.T57	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704				71	0	0.00	51	4	7.27
CEP152	0	genome.wustl.edu	37	15	49054609	49054609	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	49054609	49054609	A	T	SNP	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	missense	c.2541	p.H847Q	0.364	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	tier1	-	-	47	0	0.00	35	4	10.26
CILP2	0	genome.wustl.edu	37	19	19654602	19654602	+	Silent	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	19654602	19654602	C	A	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	silent	c.1248	p.P416	0.010	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				72	0	0.00	51	3	5.45
CLPTM1L	0	genome.wustl.edu	37	5	1341903	1341903	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	1341903	1341903	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	silent	c.336	p.H112	0.161	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656	tier1	rs138976877	-	60	0	0.00	27	15	35.71
COL12A1	0	genome.wustl.edu	37	6	75892984	75892984	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	75892984	75892984	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.1673	p.R558I	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				84	0	0.00	43	3	6.38
COL18A1	0	genome.wustl.edu	37	21	46893894	46893894	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	21	46893894	46893894	G	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.1982	p.G661V	0.896	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	tier1	-	-	76	0	0.00	25	9	26.47
COQ10B	0	genome.wustl.edu	37	2	198318586	198318586	+	RNA	SNP	C	C	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	198318586	198318586	C	G	SNP	COQ10B	ENST00000488445	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COQ10B	HGNC	ENSG00000115520	tier1	-	-	54	0	0.00	21	10	32.26
COX6B2	0	genome.wustl.edu	37	19	55865104	55865104	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	55865104	55865104	G	T	SNP	COX6B2	ENST00000326529	human	ensembl	74_37	-1	known	missense	c.252	p.F84L	0.019	superfamily_Cyt_c_oxidase_su6B,pirsf_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B,pirsf_Cyt_c_oxidase_su6B	-	no_errors	COX6B2	HGNC	ENSG00000160471				81	0	0.00	68	4	5.56
CSMD2	0	genome.wustl.edu	37	1	34025005	34025005	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	34025005	34025005	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.8449	p.D2817N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	tier1	-	-	75	0	0.00	67	37	35.58
CSPP1	0	genome.wustl.edu	37	8	68092096	68092096	+	Splice_Site	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	68092096	68092096	A	G	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	splice_site	c.3142-2	e26-2	1.000	-	-	-	no_errors	CSPP1	HGNC	ENSG00000104218	tier1	-	-	42	0	0.00	33	4	10.81
CWF19L1	0	genome.wustl.edu	37	10	102016226	102016226	+	Silent	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	102016226	102016226	T	C	SNP	CWF19L1	ENST00000354105	human	ensembl	74_37	-1	known	silent	c.297	p.K99	0.999	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485	tier1	-	-	62	0	0.00	33	16	32.65
DBN1	0	genome.wustl.edu	37	5	176885170	176885170	+	Silent	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	176885170	176885170	A	T	SNP	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	silent	c.1671	p.A557	0.958	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	tier1	-	-	128	0	0.00	41	4	8.89
DCAF8	0	genome.wustl.edu	37	1	160201124	160201124	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	160201124	160201124	G	T	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	missense	c.1495	p.H499N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716				99	0	0.00	74	4	5.13
DCAF8L1	0	genome.wustl.edu	37	X	27998247	27998247	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	27998247	27998247	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.1205	p.G402D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	tier1	-	-	42	0	0.00	23	4	14.81
DCLRE1A	0	genome.wustl.edu	37	10	115608957	115608957	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	115608957	115608957	T	A	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	missense	c.1907	p.K636M	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				30	0	0.00	26	2	7.14
DDX60L	0	genome.wustl.edu	37	4	169340523	169340523	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	169340523	169340523	A	T	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.2540	p.F847Y	0.998	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				70	0	0.00	29	2	6.45
DGKI	0	genome.wustl.edu	37	7	137255958	137255958	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	137255958	137255958	C	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.1910	p.G637D	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	tier1	-	-	69	0	0.00	44	4	8.33
DLD	0	genome.wustl.edu	37	7	107542770	107542770	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	107542770	107542770	A	T	SNP	DLD	ENST00000205402	human	ensembl	74_37	+1	known	missense	c.199	p.T67S	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,pfam_GIDA-rel,prints_Hg_reductase,tigrfam_Lipoamide_DH	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Lipoamide_DH	-	no_errors	DLD	HGNC	ENSG00000091140	tier1	-	-	82	0	0.00	65	4	5.80
DLGAP3	0	genome.wustl.edu	37	1	35370962	35370962	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	35370962	35370962	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.23	p.R8Q	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	tier1	-	-	68	0	0.00	77	12	13.48
DLGAP4	0	genome.wustl.edu	37	20	35154319	35154319	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	20	35154319	35154319	G	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	silent	c.2670	p.L890	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				58	0	0.00	40	3	6.98
DNAH10	0	genome.wustl.edu	37	12	124267779	124267779	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	124267779	124267779	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.784	p.A262S	0.934	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653	tier1	-	-	99	0	0.00	62	4	6.06
DNAH6	0	genome.wustl.edu	37	2	85046517	85046517	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	85046517	85046517	C	T	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	silent	c.12462	p.C4154	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423	tier1	-	-	70	0	0.00	47	4	7.84
DSC2	0	genome.wustl.edu	37	18	28662348	28662348	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	28662348	28662348	G	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	silent	c.1119	p.I373	0.473	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755	tier1	-	-	101	0	0.00	86	14	14.00
DTWD1	0	genome.wustl.edu	37	15	49926993	49926994	+	Splice_Site	INS	-	-	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	49926993	49926994	-	A	INS	DTWD1	ENST00000251250	human	ensembl	74_37	+1	known	splice_site_ins	c.667+2_667+1	e3+2	1.000:1.000	-	-	-	no_errors	DTWD1	HGNC	ENSG00000104047	tier1			31	0	0.00	26	4	13.33
DTX2	0	genome.wustl.edu	37	7	76110027	76110027	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	76110027	76110027	G	A	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	silent	c.201	p.Q67	0.507	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073	tier1	-	-	72	0	0.00	35	4	10.26
EBF2	0	genome.wustl.edu	37	8	25744358	25744358	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	25744358	25744358	G	A	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	missense	c.922	p.R308W	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818	tier1	-	-	136	0	0.00	68	4	5.56
ENOX2	0	genome.wustl.edu	37	X	129803957	129803957	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	129803957	129803957	C	T	SNP	ENOX2	ENST00000338144	human	ensembl	74_37	-1	known	missense	c.763	p.V255I	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675	tier1	-	-	21	0	0.00	9	3	25.00
ENSG00000221749	0	genome.wustl.edu	37	12	129154486	129154486	+	RNA	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	129154486	129154486	A	G	SNP	ENSG00000221749	ENST00000408822	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.391	-	-	-	no_errors	AC107020.1	Clone_based_ensembl_gene	ENSG00000221749	tier1	-	-	72	0	0.00	18	16	47.06
ENSG00000254246	0	genome.wustl.edu	37	5	156531839	156531839	+	RNA	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	156531839	156531839	A	-	DEL	ENSG00000254246	ENST00000517708	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTB-120L21.1	Clone_based_vega_gene	ENSG00000254246	tier1			55	0	0.00	26	3	10.34
ENSG00000260772	0	genome.wustl.edu	37	16	69738348	69738348	+	RNA	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	69738348	69738348	A	T	SNP	ENSG00000260772	ENST00000561622	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-311C24.1	Clone_based_vega_gene	ENSG00000260772	tier1	-	-	81	0	0.00	44	19	30.16
ERCC3	0	genome.wustl.edu	37	2	128036799	128036799	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	128036799	128036799	G	T	SNP	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	silent	c.1680	p.V560	0.849	superfamily_P-loop_NTPase,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161	tier1	-	-	103	0	0.00	34	18	34.62
FA2H	0	genome.wustl.edu	37	16	74752979	74752979	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	74752979	74752979	G	A	SNP	FA2H	ENST00000567683	human	ensembl	74_37	-1	known	missense	c.443	p.T148I	1.000	NULL	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FA2H	HGNC	ENSG00000103089	tier1	-	-	55	0	0.00	48	4	7.69
FAM105B	0	genome.wustl.edu	37	5	14687651	14687651	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	14687651	14687651	A	T	SNP	FAM105B	ENST00000284274	human	ensembl	74_37	+1	known	nonsense	c.490	p.K164*	0.352	prints_FAM105B	prints_FAM105,prints_FAM105B,prints_FAM105A	-	no_errors	FAM105B	HGNC	ENSG00000154124				87	0	0.00	66	4	5.63
FAM155A	0	genome.wustl.edu	37	13	108518145	108518145	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	13	108518145	108518145	G	C	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.800	p.A267G	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	tier1	-	-	55	0	0.00	26	11	29.73
FAM161A	0	genome.wustl.edu	37	2	62080999	62080999	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	62080999	62080999	C	T	SNP	FAM161A	ENST00000405894	human	ensembl	74_37	-1	known	missense	c.178	p.A60T	0.060	NULL	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264				91	0	0.00	47	4	7.84
FAM214A	0	genome.wustl.edu	37	15	52879367	52879367	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	52879367	52879367	G	T	SNP	FAM214A	ENST00000261844	human	ensembl	74_37	-1	known	missense	c.2858	p.P953H	1.000	NULL	NULL	-	no_errors	FAM214A	HGNC	ENSG00000047346	tier1	-	-	106	0	0.00	56	4	6.67
FAM49A	0	genome.wustl.edu	37	2	16745363	16745363	+	Splice_Site	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	16745363	16745363	C	A	SNP	FAM49A	ENST00000355549	human	ensembl	74_37	-1	known	splice_site	c.193-1	e3-1	1.000	-	-	-	no_errors	FAM49A	HGNC	ENSG00000197872				69	0	0.00	33	2	5.71
FBXO38	0	genome.wustl.edu	37	5	147793797	147793798	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	147793797	147793798	-	T	INS	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	frame_shift_ins	c.1192_1193	p.S400fs	1.000:1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868	tier1			37	0	0.00	21	2	8.70
FBXO8	0	genome.wustl.edu	37	4	175158640	175158640	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	175158640	175158640	C	A	SNP	FBXO8	ENST00000393674	human	ensembl	74_37	-1	known	missense	c.883	p.A295S	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_F-box_dom,smart_Sec7_dom,pfscan_F-box_dom,pfscan_Sec7_dom	-	no_errors	FBXO8	HGNC	ENSG00000164117				42	0	0.00	16	2	11.11
FEM1C	0	genome.wustl.edu	37	5	114860292	114860292	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	114860292	114860292	C	T	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	missense	c.1567	p.V523I	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780				77	0	0.00	29	2	6.45
FEN1	0	genome.wustl.edu	37	11	61562992	61562992	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	61562992	61562992	G	A	SNP	FEN1	ENST00000305885	human	ensembl	74_37	+1	known	silent	c.159	p.L53	0.993	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	FEN1	HGNC	ENSG00000168496	tier1	-	-	92	0	0.00	55	4	6.78
FGF5	0	genome.wustl.edu	37	4	81189430	81189430	+	RNA	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	81189430	81189430	C	A	SNP	FGF5	ENST00000503413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FGF5	HGNC	ENSG00000138675	tier1	-	-	29	0	0.00	10	4	28.57
FGF5	0	genome.wustl.edu	37	4	81208235	81208236	+	RNA	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	81208235	81208236	-	T	INS	FGF5	ENST00000503413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.109:0.035	-	-	-	no_errors	FGF5	HGNC	ENSG00000138675	tier1			58	0	0.00	37	4	9.76
FKBP9	0	genome.wustl.edu	37	7	33044838	33044838	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	33044838	33044838	C	G	SNP	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	missense	c.1747	p.P583A	0.994	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				135	0	0.00	90	7	7.22
FKBP9L	0	genome.wustl.edu	37	7	55750467	55750467	+	RNA	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	55750467	55750467	G	C	SNP	FKBP9L	ENST00000455909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826	tier1	-	-	78	0	0.00	28	9	24.32
FLJ46361	0	genome.wustl.edu	37	10	124536328	124536328	+	Splice_Site	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	124536328	124536328	A	G	SNP	FLJ46361	ENST00000439464	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	RP11-318C4.2	Clone_based_vega_gene	ENSG00000176584				57	0	0.00	42	3	6.67
FOXM1	0	genome.wustl.edu	37	12	2983434	2983434	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	2983434	2983434	G	A	SNP	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	missense	c.211	p.P71S	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	tier1	-	-	60	0	0.00	44	4	8.33
FRAS1	0	genome.wustl.edu	37	4	79432599	79432599	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	79432599	79432599	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.9952	p.A3318T	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	tier1	-	-	74	0	0.00	40	4	9.09
FSCN2	0	genome.wustl.edu	37	17	79502107	79502107	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	79502107	79502107	G	A	SNP	FSCN2	ENST00000334850	human	ensembl	74_37	+1	known	missense	c.856	p.E286K	1.000	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	tier1	-	-	29	0	0.00	11	8	42.11
FTSJ3	0	genome.wustl.edu	37	17	61899154	61899155	+	In_Frame_Ins	INS	-	-	CTC			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	61899154	61899155	-	CTC	INS	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	in_frame_ins	c.1525_1524	p.508in_frame_insE	1.000:0.886	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	tier1			32	0	0.00	17	4	19.05
FYTTD1	0	genome.wustl.edu	37	3	197508914	197508915	+	RNA	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	197508914	197508915	-	T	INS	FYTTD1	ENST00000492360	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.017:0.208	-	-	-	no_errors	FYTTD1	HGNC	ENSG00000122068	tier1			8	0	0.00	22	5	18.52
GAD1	0	genome.wustl.edu	37	2	171687588	171687588	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	171687588	171687588	C	T	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	missense	c.433	p.H145Y	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683	tier1	-	-	84	0	0.00	60	4	6.25
GADD45B	0	genome.wustl.edu	37	19	2476577	2476577	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	2476577	2476577	G	A	SNP	GADD45B	ENST00000215631	human	ensembl	74_37	+1	known	missense	c.95	p.R32H	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	GADD45B	HGNC	ENSG00000099860	tier1	-	-	62	0	0.00	47	4	7.84
GARS	0	genome.wustl.edu	37	7	30642730	30642730	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	30642730	30642730	T	C	SNP	GARS	ENST00000389266	human	ensembl	74_37	+1	known	missense	c.650	p.L217P	0.998	pfam_aa-tRNA-synt_IIb_cons-dom,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,prints_tRNA-synt_gly,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105				107	0	0.00	69	4	5.48
GGCX	0	genome.wustl.edu	37	2	85778646	85778646	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	85778646	85778646	G	A	SNP	GGCX	ENST00000233838	human	ensembl	74_37	-1	known	missense	c.1697	p.A566V	1.000	superfamily_RmlC_Cupin	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486	tier1	-	-	64	0	0.00	21	4	16.00
GIGYF2	0	genome.wustl.edu	37	2	233681605	233681605	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	233681605	233681605	G	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.2299	p.E767*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120	tier1	-	-	55	0	0.00	20	3	13.04
GIGYF2	0	genome.wustl.edu	37	2	233681731	233681731	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	233681731	233681731	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.2425	p.R809*	0.993	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				81	0	0.00	35	2	5.41
GJA8	0	genome.wustl.edu	37	1	147380384	147380384	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	147380384	147380384	G	T	SNP	GJA8	ENST00000240986	human	ensembl	74_37	+1	known	missense	c.302	p.R101L	1.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634	tier1	-	-	31	0	0.00	16	19	52.78
GON4L	0	genome.wustl.edu	37	1	155735075	155735075	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	155735075	155735075	G	C	SNP	GON4L	ENST00000368331	human	ensembl	74_37	-1	known	missense	c.4189	p.P1397A	0.003	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580				40	0	0.00	27	2	6.90
GPC6	0	genome.wustl.edu	37	13	94482729	94482729	+	Silent	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	13	94482729	94482729	C	A	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	silent	c.642	p.A214	0.996	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	tier1	-	-	127	0	0.00	48	34	41.46
GRPEL2	0	genome.wustl.edu	37	5	148725164	148725164	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	148725164	148725164	C	T	SNP	GRPEL2	ENST00000329271	human	ensembl	74_37	+1	known	missense	c.62	p.A21V	0.001	NULL	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL2	HGNC	ENSG00000164284				84	0	0.00	37	4	9.76
GYS1	0	genome.wustl.edu	37	19	49488805	49488805	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	49488805	49488805	T	-	DEL	GYS1	ENST00000323798	human	ensembl	74_37	-1	known	frame_shift_del	c.736	p.R246fs	1.000	pfam_Glycogen_synth,pfam_Starch_synth_cat_dom	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	tier1			42	0	0.00	30	2	6.25
HHIPL2	0	genome.wustl.edu	37	1	222713615	222713615	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	222713615	222713615	C	A	SNP	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	missense	c.1187	p.R396L	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512	tier1	-	-	87	0	0.00	72	4	5.26
HIP1	0	genome.wustl.edu	37	7	75182803	75182803	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	75182803	75182803	G	T	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	silent	c.2244	p.A748	0.544	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946	tier1	-	-	64	0	0.00	54	4	6.90
HLA-DRB1	0	genome.wustl.edu	37	6	32551952	32551953	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	32551952	32551953	CC	-	DEL	HLA-DRB1	ENST00000360004	human	ensembl	74_37	-1	known	frame_shift_del	c.304_303	p.A102fs	0.195:0.185	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	tier1			10	0	0.00	4	2	33.33
HOMER1	0	genome.wustl.edu	37	5	78671920	78671921	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	78671920	78671921	-	T	INS	HOMER1	ENST00000334082	human	ensembl	74_37	-1	known	frame_shift_ins	c.977_976	p.L326fs	1.000:1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413	tier1			56	0	0.00	16	2	11.11
HRC	0	genome.wustl.edu	37	19	49656964	49656964	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	49656964	49656964	G	A	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	missense	c.1531	p.H511Y	0.000	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528	tier1	-	-	22	0	0.00	14	13	48.15
IARS	0	genome.wustl.edu	37	9	95009691	95009691	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	95009691	95009691	C	T	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	missense	c.2759	p.S920N	0.064	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				35	0	0.00	17	4	19.05
ING3	0	genome.wustl.edu	37	7	120595654	120595654	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	120595654	120595654	G	T	SNP	ING3	ENST00000315870	human	ensembl	74_37	+1	known	missense	c.243	p.Q81H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING3	HGNC	ENSG00000071243				47	0	0.00	31	2	6.06
INSIG1	0	genome.wustl.edu	37	7	155094456	155094456	+	Splice_Site	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	155094456	155094456	G	A	SNP	INSIG1	ENST00000340368	human	ensembl	74_37	+1	known	splice_site	c.705-1	e4-1	1.000	-	-	-	no_errors	INSIG1	HGNC	ENSG00000186480	tier1	rs112769976	-	123	0	0.00	62	5	7.46
IQGAP3	0	genome.wustl.edu	37	1	156508933	156508933	+	RNA	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	156508933	156508933	C	T	SNP	IQGAP3	ENST00000498755	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	IQGAP3	HGNC	ENSG00000183856	tier1	-	-	19	0	0.00	3	5	62.50
JAKMIP2	0	genome.wustl.edu	37	5	147024553	147024553	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	147024553	147024553	G	A	SNP	JAKMIP2	ENST00000265272	human	ensembl	74_37	-1	known	missense	c.943	p.R315C	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049				55	0	0.00	33	2	5.71
KARS	0	genome.wustl.edu	37	16	75670405	75670405	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	75670405	75670405	G	T	SNP	KARS	ENST00000564578	human	ensembl	74_37	-1	known	missense	c.347	p.S116Y	1.000	NULL	NULL	-	no_errors	KARS	HGNC	ENSG00000065427				78	0	0.00	34	3	8.11
KBTBD12	0	genome.wustl.edu	37	3	127642922	127642922	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	127642922	127642922	G	A	SNP	KBTBD12	ENST00000405109	human	ensembl	74_37	+1	known	missense	c.1018	p.A340T	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	tier1	-	-	63	0	0.00	38	4	9.52
KBTBD4	0	genome.wustl.edu	37	11	47599482	47599482	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	47599482	47599482	G	A	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	missense	c.118	p.R40W	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	tier1	-	-	45	0	0.00	22	15	40.54
KCNH5	0	genome.wustl.edu	37	14	63246448	63246448	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	63246448	63246448	G	T	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	silent	c.2017	p.R673	0.976	prints_K_chnl_volt-dep_EAG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				69	0	0.00	37	2	5.13
KCNH7	0	genome.wustl.edu	37	2	163253371	163253371	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	163253371	163253371	C	T	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	missense	c.2492	p.C831Y	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				50	0	0.00	37	2	5.13
KDR	0	genome.wustl.edu	37	4	55958878	55958878	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	55958878	55958878	G	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2975	p.P992H	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052	tier1	-	-	75	0	0.00	51	4	7.14
KIF17	0	genome.wustl.edu	37	1	20998548	20998548	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	20998548	20998548	G	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	missense	c.2605	p.R869S	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				61	0	0.00	38	2	5.00
KLK10	0	genome.wustl.edu	37	19	51518085	51518085	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	51518085	51518085	A	G	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	missense	c.802	p.W268R	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				81	0	0.00	32	3	8.57
KLK11	0	genome.wustl.edu	37	19	51530744	51530744	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	51530744	51530744	C	-	DEL	KLK11	ENST00000594768	human	ensembl	74_37	-1	known	frame_shift_del	c.30	p.W10fs	0.055	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK11	HGNC	ENSG00000167757	tier1			102	0	0.00	42	12	22.22
KPNA1	0	genome.wustl.edu	37	3	122168479	122168479	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	122168479	122168479	C	T	SNP	KPNA1	ENST00000344337	human	ensembl	74_37	-1	known	missense	c.859	p.D287N	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA1	HGNC	ENSG00000114030				45	0	0.00	27	2	6.90
L3MBTL4	0	genome.wustl.edu	37	18	6215816	6215816	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	6215816	6215816	T	A	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.803	p.N268I	0.983	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	tier1	rs139480207	-	79	0	0.00	57	11	16.18
LAMA3	0	genome.wustl.edu	37	18	21393048	21393048	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	21393048	21393048	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.1769	p.G590D	0.959	pfam_EGF_laminin,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				30	0	0.00	21	2	8.70
LINC00615	0	genome.wustl.edu	37	12	91340252	91340253	+	RNA	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	91340252	91340253	-	T	INS	LINC00615	ENST00000546725	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.092:0.148	-	-	-	no_errors	LINC00615	HGNC	ENSG00000196243	tier1			37	0	0.00	19	3	13.64
LOC100996870	0	genome.wustl.edu	37	9	66466650	66466650	+	RNA	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	66466650	66466650	G	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.105	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1	rs1133399	-	21	0	0.00	12	4	25.00
LOC100996870	0	genome.wustl.edu	37	9	66457322	66457322	+	RNA	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	66457322	66457322	G	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.168	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				77	0	0.00	77	6	7.23
LOC728586	0	genome.wustl.edu	37	5	127133824	127133824	+	RNA	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	127133824	127133824	A	-	DEL	LOC728586	ENST00000514853	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.951	-	-	-	no_errors	CTC-228N24.1	Clone_based_vega_gene	ENSG00000230561	tier1			87	0	0.00	29	2	6.45
LRRC37A	0	genome.wustl.edu	37	17	44408828	44408828	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	44408828	44408828	T	A	SNP	LRRC37A	ENST00000320254	human	ensembl	74_37	+1	known	missense	c.4185	p.N1395K	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A	HGNC	ENSG00000176681	tier1	-	-	92	0	0.00	67	4	5.63
MADD	0	genome.wustl.edu	37	11	47306054	47306054	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	47306054	47306054	C	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.2095	p.R699C	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				32	0	0.00	30	2	6.25
MAP4	0	genome.wustl.edu	37	3	47950671	47950671	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	47950671	47950671	C	T	SNP	MAP4	ENST00000264724	human	ensembl	74_37	-1	known	missense	c.1061	p.G354E	0.010	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	tier1	-	-	78	0	0.00	23	3	11.54
MAS1L	0	genome.wustl.edu	37	6	29455082	29455082	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	29455082	29455082	G	-	DEL	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	frame_shift_del	c.598	p.L200fs	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687	tier1			51	0	0.00	17	2	10.53
MAST4	0	genome.wustl.edu	37	5	66396405	66396405	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	66396405	66396405	G	A	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.1064	p.R355H	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				87	0	0.00	31	2	6.06
MBD4	0	genome.wustl.edu	37	3	129151300	129151300	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	129151300	129151300	C	A	SNP	MBD4	ENST00000507208	human	ensembl	74_37	-1	novel	missense	c.1711	p.A571S	0.001	NULL	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071	tier1	-	-	55	0	0.00	29	4	12.12
MCMDC2	0	genome.wustl.edu	37	8	67796185	67796185	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	67796185	67796185	C	T	SNP	MCMDC2	ENST00000422365	human	ensembl	74_37	+1	known	silent	c.1029	p.C343	0.593	smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	-	no_errors	MCMDC2	HGNC	ENSG00000178460				40	0	0.00	32	3	8.33
MED13	0	genome.wustl.edu	37	17	60129928	60129928	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	60129928	60129928	T	C	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.440	p.Y147C	1.000	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	tier1	-	-	81	0	0.00	44	4	8.33
MED20	0	genome.wustl.edu	37	6	41888792	41888792	+	RNA	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	41888792	41888792	A	G	SNP	MED20	ENST00000482361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED20	HGNC	ENSG00000124641	tier1	-	-	49	0	0.00	15	17	53.12
MIER3	0	genome.wustl.edu	37	5	56234765	56234765	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	56234765	56234765	G	T	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	missense	c.260	p.A87E	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545	tier1	-	-	79	0	0.00	36	4	10.00
MKKS	0	genome.wustl.edu	37	20	10388353	10388353	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	20	10388353	10388353	G	T	SNP	MKKS	ENST00000347364	human	ensembl	74_37	-1	known	missense	c.1183	p.H395N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	MKKS	HGNC	ENSG00000125863	tier1	-	-	50	0	0.00	37	4	9.76
MLIP	0	genome.wustl.edu	37	6	54002293	54002293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	54002293	54002293	C	-	DEL	MLIP	ENST00000502396	human	ensembl	74_37	+1	putative	frame_shift_del	c.1426	p.P476fs	0.424	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147	tier1			59	0	0.00	17	2	10.53
MPV17	0	genome.wustl.edu	37	2	27532772	27532772	+	Silent	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	27532772	27532772	A	G	SNP	MPV17	ENST00000402310	human	ensembl	74_37	-1	novel	silent	c.486	p.P162	0.007	NULL	NULL	-	no_errors	MPV17	HGNC	ENSG00000115204	tier1	-	-	46	0	0.00	37	4	9.76
MRPS18A	0	genome.wustl.edu	37	6	43655404	43655404	+	Splice_Site	SNP	C	C	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	43655404	43655404	C	G	SNP	MRPS18A	ENST00000372133	human	ensembl	74_37	-1	known	splice_site	c.112+1	e1+1	1.000	-	-	-	no_errors	MRPS18A	HGNC	ENSG00000096080				145	0	0.00	65	5	7.14
MST1R	0	genome.wustl.edu	37	3	49933711	49933712	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	49933711	49933712	-	A	INS	MST1R	ENST00000296474	human	ensembl	74_37	-1	known	frame_shift_ins	c.2566_2565	p.G855fs	0.073:0.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MST1R	HGNC	ENSG00000164078	tier1			43	0	0.00	12	2	14.29
MT-RNR2	0	genome.wustl.edu	37	MT	1832	1832	+	RNA	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	MT	1832	1832	A	T	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	15	0	0.00	5	2	28.57
MTTP	0	genome.wustl.edu	37	4	100540133	100540133	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	100540133	100540133	A	T	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.2220	p.E740D	0.948	NULL	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	tier1	-	-	90	0	0.00	49	12	19.67
MUC4	0	genome.wustl.edu	37	3	195508454	195508455	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	195508454	195508455	0	C	INS	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	frame_shift_ins	c.9997_9996	p.S3332fs	0.512:0.562	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				100	0	0.00	160	10	5.88
MVP	0	genome.wustl.edu	37	16	29845364	29845364	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	29845364	29845364	G	A	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	missense	c.554	p.R185Q	1.000	pfam_Vault_N	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	tier1	-	-	28	0	0.00	16	6	27.27
MYBPH	0	genome.wustl.edu	37	1	203144850	203144850	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	203144850	203144850	A	T	SNP	MYBPH	ENST00000255416	human	ensembl	74_37	-1	known	missense	c.34	p.C12S	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPH	HGNC	ENSG00000133055	tier1	-	-	100	0	0.00	74	4	5.13
MYH6	0	genome.wustl.edu	37	14	23871799	23871799	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	23871799	23871799	C	T	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.1015	p.V339M	0.970	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	tier1	-	-	45	0	0.00	14	14	50.00
MYPN	0	genome.wustl.edu	37	10	69934313	69934313	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	69934313	69934313	C	T	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.2464	p.R822W	0.999	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347	tier1	-	-	35	0	0.00	24	6	20.00
NAV2	0	genome.wustl.edu	37	11	20067059	20067059	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	20067059	20067059	A	G	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.3814	p.T1272A	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	tier1	-	-	33	0	0.00	23	8	25.81
NEK2	0	genome.wustl.edu	37	1	211846999	211846999	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	211846999	211846999	G	A	SNP	NEK2	ENST00000540251	human	ensembl	74_37	-1	known	silent	c.252	p.C84	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK2	HGNC	ENSG00000117650				52	0	0.00	45	4	8.00
NEO1	0	genome.wustl.edu	37	15	73590734	73590734	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	73590734	73590734	C	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.3947	p.S1316L	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				69	0	0.00	30	2	6.25
NEU2	0	genome.wustl.edu	37	2	233897431	233897431	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	233897431	233897431	C	T	SNP	NEU2	ENST00000233840	human	ensembl	74_37	+1	known	missense	c.50	p.A17V	0.007	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU2	HGNC	ENSG00000115488	tier1	-	-	29	0	0.00	13	4	23.53
NFE2L2	0	genome.wustl.edu	37	2	178098804	178098804	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	178098804	178098804	C	T	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.241	p.G81S	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	tier1	-	-	90	0	0.00	61	24	28.24
NOTCH4	0	genome.wustl.edu	37	6	32183074	32183074	+	Silent	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	32183074	32183074	G	C	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	silent	c.1950	p.L650	0.998	pirsf_Notch,smart_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	tier1	-	-	76	0	0.00	25	12	32.43
OR4C15	0	genome.wustl.edu	37	11	55322411	55322411	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	55322411	55322411	T	A	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.629	p.M210K	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				35	0	0.00	18	2	10.00
OR52A4	0	genome.wustl.edu	37	11	5142488	5142488	+	RNA	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	5142488	5142488	G	A	SNP	OR52A4	ENST00000481634	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	OR52A4	HGNC	ENSG00000205494	tier1	-	-	40	0	0.00	23	10	30.30
OR5R1	0	genome.wustl.edu	37	11	56185550	56185550	+	Silent	SNP	A	A	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	56185550	56185550	A	C	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	silent	c.159	p.T53	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942	tier1	-	-	47	0	0.00	31	4	11.43
OR6K6	0	genome.wustl.edu	37	1	158725227	158725227	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	158725227	158725227	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.622	p.D208N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	tier1	-	-	26	0	0.00	16	5	23.81
OR8H1	0	genome.wustl.edu	37	11	56058080	56058080	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	56058080	56058080	G	A	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.459	p.I153	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693	tier1	-	-	47	0	0.00	32	15	31.91
OSTF1	0	genome.wustl.edu	37	9	77742518	77742518	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	77742518	77742518	A	G	SNP	OSTF1	ENST00000346234	human	ensembl	74_37	+1	known	missense	c.115	p.I39V	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Ankyrin_rpt	-	no_errors	OSTF1	HGNC	ENSG00000134996	tier1	-	-	109	0	0.00	98	8	7.55
OTUD7A	0	genome.wustl.edu	37	15	31796012	31796012	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	31796012	31796012	G	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	missense	c.903	p.N301K	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				36	0	0.00	34	2	5.56
PAPD7	0	genome.wustl.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	6755013	6755014	AC	-	DEL	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	frame_shift_del	c.1584_1585	p.T532fs	1.000:1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941	tier1			50	0	0.00	30	3	9.09
PAPL	0	genome.wustl.edu	37	19	39591447	39591447	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	39591447	39591447	G	C	SNP	PAPL	ENST00000331256	human	ensembl	74_37	+1	known	missense	c.761	p.R254P	0.996	pfam_PEstase_dom	pfam_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	PAPL	Uniprot_gn	ENSG00000183760				36	0	0.00	24	2	7.69
PAPPA2	0	genome.wustl.edu	37	1	176659289	176659289	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	176659289	176659289	C	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.2154	p.S718R	1.000	pfam_Peptidase_M43	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	39	0	0.00	36	6	14.29
PARM1	0	genome.wustl.edu	37	4	75938361	75938361	+	Splice_Site	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	75938361	75938361	G	T	SNP	PARM1	ENST00000307428	human	ensembl	74_37	+1	known	splice_site	c.769+1	e2+1	1.000	-	-	-	no_errors	PARM1	HGNC	ENSG00000169116				26	0	0.00	30	2	6.25
PAXBP1	0	genome.wustl.edu	37	21	34120808	34120808	+	Splice_Site	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	21	34120808	34120808	A	G	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	splice_site	c.1923+2	e11+2	0.982	-	-	-	no_errors	PAXBP1	HGNC	ENSG00000159086	tier1	-	-	47	0	0.00	41	4	8.89
PCBP4	0	genome.wustl.edu	37	3	51992252	51992252	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	51992252	51992252	A	-	DEL	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	frame_shift_del	c.1100	p.L367fs	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097	tier1			56	0	0.00	17	2	10.53
PCDH15	0	genome.wustl.edu	37	10	55581113	55581113	+	RNA	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	55581113	55581113	G	A	SNP	PCDH15	ENST00000463095	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	25	0	0.00	18	7	28.00
PCF11	0	genome.wustl.edu	37	11	82880460	82880460	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	82880460	82880460	G	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.3083	p.G1028V	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				78	0	0.00	64	4	5.88
PCNT	0	genome.wustl.edu	37	21	47766842	47766842	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	21	47766842	47766842	G	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.906	p.E302D	1.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				21	0	0.00	17	2	10.53
PDE6A	0	genome.wustl.edu	37	5	149324057	149324057	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	149324057	149324057	G	T	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	silent	c.180	p.I60	0.979	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	tier1	-	-	26	0	0.00	12	3	20.00
PFAS	0	genome.wustl.edu	37	17	8161134	8161134	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	8161134	8161134	T	A	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	missense	c.1085	p.L362Q	0.990	pfam_AIR_synth_N_dom,superfamily_PurM_N-like,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				76	0	0.00	38	3	7.32
PHACTR4	0	genome.wustl.edu	37	1	28696279	28696279	+	RNA	DEL	G	G	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	28696279	28696279	G	-	DEL	PHACTR4	ENST00000463428	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	PHACTR4	HGNC	ENSG00000204138	tier1			82	0	0.00	57	21	26.92
PHLPP2	0	genome.wustl.edu	37	16	71736521	71736521	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	71736521	71736521	C	T	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	missense	c.398	p.C133Y	1.000	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199	tier1	-	-	99	0	0.00	57	4	6.56
PIK3C3	0	genome.wustl.edu	37	18	39647366	39647366	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	39647366	39647366	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	silent	c.2538	p.F846	0.999	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				107	0	0.00	38	2	5.00
PIK3R1	0	genome.wustl.edu	37	5	67588172	67588172	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	67588172	67588172	C	A	SNP	PIK3R1	ENST00000396611	human	ensembl	74_37	+1	known	nonsense	c.1002	p.Y334*	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675				99	0	0.00	38	2	5.00
PIKFYVE	0	genome.wustl.edu	37	2	209207315	209207315	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	209207315	209207315	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	nonsense	c.4969	p.R1657*	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				89	0	0.00	35	2	5.41
PIR	0	genome.wustl.edu	37	X	15402994	15402994	+	RNA	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	15402994	15402994	T	C	SNP	PIR	ENST00000492432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PIR	HGNC	ENSG00000087842	tier1	-	-	12	0	0.00	1	5	83.33
PLD1	0	genome.wustl.edu	37	3	171379880	171379880	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	171379880	171379880	T	C	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.2310	p.I770M	0.999	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	tier1	-	-	63	0	0.00	36	4	10.00
PLXNB2	0	genome.wustl.edu	37	22	50718132	50718132	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	50718132	50718132	G	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.4316	p.A1439V	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				97	0	0.00	55	3	5.00
PMFBP1	0	genome.wustl.edu	37	16	72188212	72188212	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	72188212	72188212	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	silent	c.312	p.L104	0.978	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				88	0	0.00	39	4	9.30
POM121	0	genome.wustl.edu	37	7	72413094	72413094	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	72413094	72413094	C	T	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.2562	p.T854	0.028	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	tier1	-	-	25	0	0.00	19	6	24.00
PPP1R18	0	genome.wustl.edu	37	6	30652836	30652836	+	Silent	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	30652836	30652836	T	C	SNP	PPP1R18	ENST00000274853	human	ensembl	74_37	-1	known	silent	c.960	p.E320	0.987	NULL	NULL	-	no_errors	PPP1R18	HGNC	ENSG00000146112	tier1	-	-	25	0	0.00	5	4	44.44
PPP3R2	0	genome.wustl.edu	37	9	104356841	104356841	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	104356841	104356841	G	T	SNP	PPP3R2	ENST00000374806	human	ensembl	74_37	-1	known	silent	c.372	p.G124	0.001	pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	PPP3R2	HGNC	ENSG00000188386	tier1	-	-	48	0	0.00	48	4	7.69
PRAMEF13	0	genome.wustl.edu	37	1	13448426	13448426	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	13448426	13448426	G	C	SNP	PRAMEF13	ENST00000376132	human	ensembl	74_37	-1	known	missense	c.1049	p.S350C	0.009	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495	tier1	-	-	38	0	0.00	9	11	55.00
PROSER2	0	genome.wustl.edu	37	10	11911789	11911789	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	11911789	11911789	G	0	DEL	PROSER2	ENST00000277570	human	ensembl	74_37	+1	known	frame_shift_del	c.692	p.R234fs	0.000	NULL	NULL	-	no_errors	PROSER2	HGNC	ENSG00000148426				8	0	0.00	4	2	33.33
PSD2	0	genome.wustl.edu	37	5	139192910	139192910	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	139192910	139192910	G	T	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	nonsense	c.388	p.E130*	0.986	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005	tier1	-	-	107	0	0.00	16	18	52.94
PTGS1	0	genome.wustl.edu	37	9	125143816	125143816	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	125143816	125143816	G	A	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	silent	c.663	p.K221	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	tier1	-	-	79	0	0.00	69	8	10.39
PTPN4	0	genome.wustl.edu	37	2	120709667	120709667	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	120709667	120709667	G	T	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.1775	p.R592I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179	tier1	-	-	78	0	0.00	62	4	6.06
PVRL3	0	genome.wustl.edu	37	3	110841020	110841020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	110841020	110841020	A	-	DEL	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	frame_shift_del	c.852	p.G286fs	1.000	pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707	tier1			63	0	0.00	21	2	8.70
QRICH2	0	genome.wustl.edu	37	17	74287108	74287108	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	74287108	74287108	G	A	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	silent	c.3202	p.L1068	0.009	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				73	0	0.00	44	3	6.25
RAD9B	0	genome.wustl.edu	37	12	110956488	110956488	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	110956488	110956488	C	T	SNP	RAD9B	ENST00000392672	human	ensembl	74_37	+1	known	silent	c.603	p.S201	0.004	pfam_Rad9/Ddc1,pirsf_Rad9	pfam_Rad9/Ddc1,pirsf_Rad9	-	no_errors	RAD9B	HGNC	ENSG00000151164				82	0	0.00	63	4	5.97
RAP1GAP2	0	genome.wustl.edu	37	17	2929399	2929399	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	2929399	2929399	T	A	SNP	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	missense	c.1849	p.C617S	1.000	NULL	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359	tier1	-	-	60	0	0.00	53	4	7.02
RAP1GAP2	0	genome.wustl.edu	37	17	2929685	2929685	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	2929685	2929685	G	T	SNP	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	missense	c.1907	p.R636L	1.000	NULL	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359	tier1	-	-	61	0	0.00	55	4	6.78
RFK	0	genome.wustl.edu	37	9	79003557	79003557	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	79003557	79003557	G	A	SNP	RFK	ENST00000376736	human	ensembl	74_37	-1	known	missense	c.250	p.H84Y	1.000	pfam_Riboflavin_kinase_bac/euk,superfamily_Riboflavin_kinase_bac/euk,smart_Riboflavin_kinase_bac/euk	pfam_Riboflavin_kinase_bac/euk,superfamily_Riboflavin_kinase_bac/euk,smart_Riboflavin_kinase_bac/euk	-	no_errors	RFK	HGNC	ENSG00000135002	tier1	-	-	42	0	0.00	52	4	7.14
RFX3	0	genome.wustl.edu	37	9	3248085	3248085	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	3248085	3248085	C	A	SNP	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	nonsense	c.1915	p.E639*	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	tier1	-	-	27	0	0.00	19	4	17.39
RNF213	0	genome.wustl.edu	37	17	78247183	78247183	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	78247183	78247183	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.241	p.A81S	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				46	0	0.00	32	4	11.11
RNPEP	0	genome.wustl.edu	37	1	201966644	201966644	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	201966644	201966644	C	T	SNP	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	missense	c.1052	p.T351I	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393	tier1	-	-	66	0	0.00	38	4	9.52
ROBO4	0	genome.wustl.edu	37	11	124761263	124761263	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	124761263	124761263	C	T	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	missense	c.1880	p.R627H	0.004	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				54	0	0.00	45	3	6.25
RP1	0	genome.wustl.edu	37	8	55537775	55537775	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	55537775	55537775	C	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.1333	p.R445S	0.034	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				49	0	0.00	30	2	6.25
RPLP0	0	genome.wustl.edu	37	12	120638796	120638796	+	RNA	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	120638796	120638796	G	A	SNP	RPLP0	ENST00000551336	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RPLP0	HGNC	ENSG00000089157	tier1	-	-	107	0	0.00	57	22	27.50
RTKN2	0	genome.wustl.edu	37	10	63964713	63964713	+	Silent	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	63964713	63964713	A	G	SNP	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	silent	c.1089	p.P363	0.285	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	tier1	-	-	66	0	0.00	37	4	9.76
RTN2	0	genome.wustl.edu	37	19	45997462	45997462	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	45997462	45997462	G	A	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	missense	c.776	p.T259M	0.938	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	tier1	-	-	75	0	0.00	28	11	28.21
SCG2	0	genome.wustl.edu	37	2	224463668	224463668	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	224463668	224463668	C	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	missense	c.333	p.M111I	1.000	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	tier1	-	-	44	0	0.00	17	3	15.00
SCG2	0	genome.wustl.edu	37	2	224463671	224463671	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	224463671	224463671	C	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	nonsense	c.330	p.W110*	1.000	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	tier1	-	-	46	0	0.00	17	3	15.00
SCML4	0	genome.wustl.edu	37	6	108029193	108029193	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	108029193	108029193	C	T	SNP	SCML4	ENST00000369025	human	ensembl	74_37	-1	putative	silent	c.270	p.A90	0.001	superfamily_SAM/pointed	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM	-	no_errors	SCML4	HGNC	ENSG00000146285				44	0	0.00	30	2	6.25
SEC24C	0	genome.wustl.edu	37	10	75526909	75526909	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	10	75526909	75526909	T	A	SNP	SEC24C	ENST00000339365	human	ensembl	74_37	+1	known	missense	c.1991	p.I664N	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	tier1	-	-	43	0	0.00	23	4	14.81
SEL1L3	0	genome.wustl.edu	37	4	25789889	25789889	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	25789889	25789889	T	-	DEL	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	frame_shift_del	c.2174	p.E725fs	1.000	smart_Sel1-like	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	tier1			56	0	0.00	17	2	10.53
SEMA3D	0	genome.wustl.edu	37	7	84647607	84647607	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	84647607	84647607	G	T	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	missense	c.1506	p.H502Q	0.998	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993	tier1	-	-	64	0	0.00	22	6	21.43
SFI1	0	genome.wustl.edu	37	22	32009191	32009191	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	32009191	32009191	C	A	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.2554	p.L852M	0.306	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	tier1	-	-	65	0	0.00	55	4	6.78
SFXN5	0	genome.wustl.edu	37	2	73268006	73268006	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	73268006	73268006	G	A	SNP	SFXN5	ENST00000272433	human	ensembl	74_37	-1	known	missense	c.226	p.R76C	0.998	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040				44	0	0.00	30	3	9.09
SH3BP1	0	genome.wustl.edu	37	22	38039752	38039754	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	38039752	38039754	AGG	-	DEL	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	in_frame_del	c.575_577	p.E196in_frame_del	1.000:1.000:1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	tier1			62	0	0.00	39	4	9.30
SHC4	0	genome.wustl.edu	37	15	49254947	49254947	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	49254947	49254947	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.266	p.R89H	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	tier1	-	-	89	0	0.00	62	4	6.06
SLC6A19	0	genome.wustl.edu	37	5	1216723	1216723	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	5	1216723	1216723	C	T	SNP	SLC6A19	ENST00000304460	human	ensembl	74_37	+1	known	missense	c.938	p.T313I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358	tier1	-	-	54	0	0.00	50	4	7.41
SLITRK5	0	genome.wustl.edu	37	13	88329272	88329272	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	13	88329272	88329272	G	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.1629	p.L543F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				50	0	0.00	25	2	7.41
SNORA67	0	genome.wustl.edu	37	17	7481397	7481397	+	RNA	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	7481397	7481397	G	A	SNP	SNORA67	ENST00000384423	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.905	-	-	-	no_errors	SNORA67	HGNC	ENSG00000264772	tier1	-	-	75	0	0.00	42	4	8.70
SP4	0	genome.wustl.edu	37	7	21470395	21470395	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	21470395	21470395	G	T	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	missense	c.1612	p.V538F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866				59	0	0.00	35	2	5.41
SPATA5	0	genome.wustl.edu	37	4	124235188	124235188	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	124235188	124235188	A	T	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	missense	c.2651	p.Y884F	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375				36	0	0.00	37	3	7.50
SPEN	0	genome.wustl.edu	37	1	16256000	16256000	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	16256000	16256000	G	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	nonsense	c.3265	p.G1089*	0.988	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	tier1	-	-	34	0	0.00	13	3	18.75
SPNS2	0	genome.wustl.edu	37	17	4435944	4435944	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	4435944	4435944	C	T	SNP	SPNS2	ENST00000329078	human	ensembl	74_37	+1	known	silent	c.900	p.T300	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018	tier1	-	-	25	0	0.00	16	9	36.00
SPTBN4	0	genome.wustl.edu	37	19	41060531	41060531	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	41060531	41060531	T	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.5063	p.L1688Q	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	tier1	-	-	58	0	0.00	46	4	8.00
SRGAP1	0	genome.wustl.edu	37	12	64456706	64456706	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	64456706	64456706	C	A	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.811	p.L271I	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				47	0	0.00	38	2	5.00
STAB2	0	genome.wustl.edu	37	12	104063385	104063385	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	104063385	104063385	C	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.2239	p.P747T	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	tier1	-	-	47	0	0.00	35	11	23.91
STAT4	0	genome.wustl.edu	37	2	191941041	191941041	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	191941041	191941041	T	C	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	missense	c.284	p.H95R	1.000	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				35	0	0.00	36	3	7.69
STL	0	genome.wustl.edu	37	6	125232348	125232348	+	RNA	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	125232348	125232348	G	T	SNP	STL	ENST00000439075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-510H23.1	Clone_based_vega_gene	ENSG00000236548	tier1	-	-	48	0	0.00	50	4	7.41
SYNE2	0	genome.wustl.edu	37	14	64492102	64492102	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	64492102	64492102	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.6215	p.G2072V	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	tier1	-	-	85	0	0.00	47	4	7.84
TAF1C	0	genome.wustl.edu	37	16	84217308	84217308	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	84217308	84217308	A	G	SNP	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	missense	c.215	p.L72P	0.027	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168	tier1	-	-	61	0	0.00	47	4	7.84
TBR1	0	genome.wustl.edu	37	2	162280507	162280507	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	162280507	162280507	C	T	SNP	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	silent	c.1818	p.P606	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535	tier1	-	-	17	0	0.00	12	7	36.84
TFAP2B	0	genome.wustl.edu	37	6	50789792	50789793	+	RNA	INS	-	-	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	6	50789792	50789793	-	T	INS	TFAP2B	ENST00000489228	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.549:0.009	-	-	-	no_errors	TFAP2B	HGNC	ENSG00000008196	tier1			41	0	0.00	29	2	6.45
TFAP4	0	genome.wustl.edu	37	16	4312652	4312652	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	4312652	4312652	C	T	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.140	p.R47Q	1.000	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				36	0	0.00	24	2	7.69
TLN1	0	genome.wustl.edu	37	9	35707164	35707164	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	9	35707164	35707164	G	A	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	silent	c.4860	p.L1620	0.271	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076	tier1	-	-	99	0	0.00	79	12	13.19
TLN2	0	genome.wustl.edu	37	15	63053890	63053890	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	63053890	63053890	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.4649	p.G1550E	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	61	0	0.00	41	4	8.89
TMEM105	0	genome.wustl.edu	37	17	79287626	79287626	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	79287626	79287626	C	T	SNP	TMEM105	ENST00000332900	human	ensembl	74_37	-1	known	missense	c.215	p.S72N	0.000	NULL	NULL	-	no_errors	TMEM105	HGNC	ENSG00000185332	tier1	-	-	107	0	0.00	61	4	6.15
TMEM134	0	genome.wustl.edu	37	11	67234982	67234984	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	67234982	67234984	TGT	-	DEL	TMEM134	ENST00000545682	human	ensembl	74_37	-1	known	in_frame_del	c.319_317	p.N106in_frame_del	0.429:0.280:0.315	pfam_DUF872_TM	pfam_DUF872_TM	-	no_errors	TMEM134	HGNC	ENSG00000172663	tier1			72	0	0.00	38	12	24.00
TMEM138	0	genome.wustl.edu	37	11	61135401	61135401	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	61135401	61135401	C	T	SNP	TMEM138	ENST00000278826	human	ensembl	74_37	+1	known	missense	c.307	p.R103C	1.000	NULL	NULL	-	no_errors	TMEM138	HGNC	ENSG00000149483				77	0	0.00	38	2	5.00
TMEM155	0	genome.wustl.edu	37	4	122682813	122682813	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	122682813	122682813	G	A	SNP	TMEM155	ENST00000337677	human	ensembl	74_37	-1	known	missense	c.92	p.A31V	0.062	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112				57	0	0.00	36	2	5.26
TMEM168	0	genome.wustl.edu	37	7	112415367	112415367	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	112415367	112415367	T	A	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	missense	c.1135	p.N379Y	1.000	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				40	0	0.00	37	2	5.13
TOM1	0	genome.wustl.edu	37	22	35723300	35723300	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	35723300	35723300	G	T	SNP	TOM1	ENST00000411850	human	ensembl	74_37	+1	known	missense	c.685	p.G229W	0.990	pfam_GAT,pirsf_TOM1,pfscan_GAT	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284				47	0	0.00	38	2	5.00
TOP2B	0	genome.wustl.edu	37	3	25648797	25648799	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	25648797	25648799	TCA	-	DEL	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	in_frame_del	c.4163_4161	p.D1388in_frame_del	1.000:1.000:0.992	NULL	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097	tier1			68	0	0.00	27	2	6.90
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934576	GMAF=0.0005	22	0	0.00	15	10	40.00
TP53	0	genome.wustl.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	7577124	7577124	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.814	p.V272M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	21	0	0.00	17	7	29.17
TP53BP2	0	genome.wustl.edu	37	1	223976780	223976780	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	223976780	223976780	G	T	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.3093	p.D1031E	1.000	superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	tier1	-	-	84	0	0.00	66	6	8.33
TPD52	0	genome.wustl.edu	37	8	80992548	80992548	+	Splice_Site	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	80992548	80992548	A	G	SNP	TPD52	ENST00000537855	human	ensembl	74_37	-1	known	splice_site	c.139+2	e1+2	1.000	-	-	-	no_errors	TPD52	HGNC	ENSG00000076554				70	0	0.00	49	3	5.77
TRIP10	0	genome.wustl.edu	37	19	6751251	6751251	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	6751251	6751251	T	-	DEL	TRIP10	ENST00000596758	human	ensembl	74_37	+1	known	frame_shift_del	c.1696	p.C566fs	0.419	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	TRIP10	HGNC	ENSG00000125733	tier1			53	0	0.00	17	7	29.17
TRO	0	genome.wustl.edu	37	X	54950123	54950123	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	54950123	54950123	C	T	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.1158	p.V386	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	tier1	-	-	49	0	0.00	26	4	13.33
TSNAX	0	genome.wustl.edu	37	1	231672957	231672957	+	Splice_Site	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	231672957	231672957	A	G	SNP	TSNAX	ENST00000366639	human	ensembl	74_37	+1	known	splice_site	c.122-2	e3-2	1.000	-	-	-	no_errors	TSNAX	HGNC	ENSG00000116918	tier1	-	-	90	0	0.00	64	4	5.88
TSPAN6	0	genome.wustl.edu	37	X	99888429	99888429	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	99888429	99888429	C	A	SNP	TSPAN6	ENST00000373020	human	ensembl	74_37	-1	known	missense	c.558	p.Q186H	0.204	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN6	HGNC	ENSG00000000003	tier1	-	-	95	0	0.00	28	22	44.00
TSPO	0	genome.wustl.edu	37	22	43558932	43558932	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	22	43558932	43558932	A	G	SNP	TSPO	ENST00000329563	human	ensembl	74_37	+1	known	missense	c.445	p.T149A	0.000	pfam_TspO_MBR,pirsf_TspO_MBR	pfam_TspO_MBR,pirsf_TspO_MBR	-	no_errors	TSPO	HGNC	ENSG00000100300	tier1	-	-	60	0	0.00	37	4	9.76
TSSC4	0	genome.wustl.edu	37	11	2423907	2423907	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	2423907	2423907	G	A	SNP	TSSC4	ENST00000333256	human	ensembl	74_37	+1	known	missense	c.44	p.G15D	0.000	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281	tier1	-	-	77	0	0.00	23	22	48.89
TTC24	0	genome.wustl.edu	37	1	156551465	156551465	+	Silent	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	156551465	156551465	G	A	SNP	TTC24	ENST00000368236	human	ensembl	74_37	+1	known	silent	c.309	p.L103	0.032	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC24	HGNC	ENSG00000187862				74	0	0.00	67	4	5.63
TTC25	0	genome.wustl.edu	37	17	40092767	40092767	+	RNA	DEL	T	T	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	40092767	40092767	T	-	DEL	TTC25	ENST00000377540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815	tier1			43	0	0.00	15	2	11.76
TTTY5	0	genome.wustl.edu	37	Y	24443605	24443605	+	RNA	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	Y	24443605	24443605	A	-	DEL	TTTY5	ENST00000400581	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	TTTY5	HGNC	ENSG00000215560	tier1			38	0	0.00	3	2	40.00
TUSC2	0	genome.wustl.edu	37	3	50357934	50357934	+	RNA	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	3	50357934	50357934	G	T	SNP	TUSC2	ENST00000462137	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	TUSC2	HGNC	ENSG00000114383	tier1	-	-	37	0	0.00	12	4	25.00
UACA	0	genome.wustl.edu	37	15	70976776	70976776	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	15	70976776	70976776	G	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	silent	c.612	p.L204	0.986	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831	tier1	-	-	47	0	0.00	23	3	11.54
UFSP2	0	genome.wustl.edu	37	4	186336464	186336464	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	186336464	186336464	G	T	SNP	UFSP2	ENST00000264689	human	ensembl	74_37	-1	known	missense	c.529	p.L177I	1.000	NULL	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775	tier1	-	-	171	0	0.00	66	4	5.71
UGT2A3	0	genome.wustl.edu	37	4	69796326	69796326	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	4	69796326	69796326	G	T	SNP	UGT2A3	ENST00000251566	human	ensembl	74_37	-1	known	missense	c.1242	p.N414K	0.279	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220				77	0	0.00	59	4	6.35
UNC119	0	genome.wustl.edu	37	17	26875695	26875695	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	17	26875695	26875695	G	T	SNP	UNC119	ENST00000335765	human	ensembl	74_37	-1	known	silent	c.249	p.I83	0.885	pfam_GMP_PDE_delta,superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119	HGNC	ENSG00000109103	tier1	-	-	60	0	0.00	40	4	9.09
UNC80	0	genome.wustl.edu	37	2	210698843	210698843	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	2	210698843	210698843	A	-	DEL	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	frame_shift_del	c.2893	p.K966fs	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1			84	0	0.00	26	3	10.34
USP14	0	genome.wustl.edu	37	18	203115	203115	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	203115	203115	G	T	SNP	USP14	ENST00000261601	human	ensembl	74_37	+1	known	silent	c.960	p.L320	0.849	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557	tier1	-	-	60	0	0.00	43	4	8.51
VWF	0	genome.wustl.edu	37	12	6125355	6125355	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	12	6125355	6125355	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.5355	p.M1785I	0.026	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	54	0	0.00	48	4	7.69
XIST	0	genome.wustl.edu	37	X	73070803	73070803	+	RNA	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	73070803	73070803	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1	-	-	23	0	0.00	5	16	76.19
YY1	0	genome.wustl.edu	37	14	100743822	100743822	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	100743822	100743822	A	G	SNP	YY1	ENST00000262238	human	ensembl	74_37	+1	known	missense	c.1130	p.H377R	1.000	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811	tier1	-	-	35	0	0.00	19	9	32.14
ZBTB16	0	genome.wustl.edu	37	11	113934619	113934619	+	Silent	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	11	113934619	113934619	C	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	silent	c.597	p.T199	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				17	0	0.00	25	2	7.41
ZC2HC1C	0	genome.wustl.edu	37	14	75537781	75537781	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	14	75537781	75537781	G	T	SNP	ZC2HC1C	ENST00000524913	human	ensembl	74_37	+1	known	nonsense	c.505	p.E169*	0.625	NULL	NULL	-	no_errors	ZC2HC1C	HGNC	ENSG00000119703	tier1	-	-	53	0	0.00	37	4	9.76
ZFAND1	0	genome.wustl.edu	37	8	82629519	82629519	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	8	82629519	82629519	C	A	SNP	ZFAND1	ENST00000220669	human	ensembl	74_37	-1	known	nonsense	c.103	p.E35*	1.000	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	-	no_errors	ZFAND1	HGNC	ENSG00000104231				42	0	0.00	18	2	10.00
ZFX	0	genome.wustl.edu	37	X	24197367	24197367	+	Silent	SNP	A	A	G			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	24197367	24197367	A	G	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	silent	c.243	p.S81	1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	tier1	-	-	44	0	0.00	26	3	10.34
ZNF267	0	genome.wustl.edu	37	16	31927437	31927437	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	31927437	31927437	C	T	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.1867	p.R623W	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				67	0	0.00	33	2	5.71
ZNF407	0	genome.wustl.edu	37	18	72632586	72632586	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	18	72632586	72632586	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.5366	p.R1789Q	0.008	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				72	0	0.00	28	2	6.67
ZNF436	0	genome.wustl.edu	37	1	23689412	23689412	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	1	23689412	23689412	G	T	SNP	ZNF436	ENST00000314011	human	ensembl	74_37	-1	known	silent	c.463	p.R155	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF436	HGNC	ENSG00000125945				55	0	0.00	38	2	5.00
ZNF479	0	genome.wustl.edu	37	7	57188204	57188204	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	7	57188204	57188204	A	-	DEL	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	frame_shift_del	c.918	p.F306fs	0.022	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	tier1			116	0	0.00	84	6	6.67
ZNF720	0	genome.wustl.edu	37	16	31765275	31765275	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	16	31765275	31765275	A	T	SNP	ZNF720	ENST00000398696	human	ensembl	74_37	+1	known	missense	c.205	p.T69S	0.013	NULL	NULL	-	no_errors	ZNF720	HGNC	ENSG00000197302	tier1	-	-	40	0	0.00	50	4	7.41
ZNF99	0	genome.wustl.edu	37	19	22941058	22941058	+	Silent	SNP	G	G	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	19	22941058	22941058	G	T	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	silent	c.1380	p.T460	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	-	-	87	0	0.00	41	14	25.45
ZXDB	0	genome.wustl.edu	37	X	57619666	57619666	+	Silent	SNP	C	C	T			TCGA-LN-A8I0-01A-11D-A36J-09	TCGA-LN-A8I0-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d0906d6-e09d-4a51-b193-df76f464bf2b	ac64b984-1741-431e-adc0-9141658224a6	X	57619666	57619666	C	T	SNP	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	silent	c.1185	p.C395	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455	tier1	-	-	55	0	0.00	36	4	10.00
