Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC4	0	genome.wustl.edu	37	13	95696000	95696000	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	95696000	95696000	G	A	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.3671	p.A1224V	0.996	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				48	0	0.00	71	4	5.26
ACSS3	0	genome.wustl.edu	37	12	81624851	81624851	+	Silent	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	81624851	81624851	T	C	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	silent	c.1530	p.P510	0.994	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058	tier1	-	-	50	0	0.00	81	41	33.61
ACTA1	0	genome.wustl.edu	37	1	229567918	229567918	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	229567918	229567918	C	T	SNP	ACTA1	ENST00000366684	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA1	HGNC	ENSG00000143632	tier1	-	-	40	0	0.00	53	6	10.17
ADAM19	0	genome.wustl.edu	37	5	156908845	156908845	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	156908845	156908845	C	A	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	missense	c.2663	p.G888V	0.001	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074	tier1	-	-	56	0	0.00	50	9	15.25
ADAMTS18	0	genome.wustl.edu	37	16	77353798	77353798	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	16	77353798	77353798	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2480	p.R827H	0.786	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	tier1	rs149031657	-	55	0	0.00	32	11	25.58
ADCY8	0	genome.wustl.edu	37	8	132052045	132052045	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	132052045	132052045	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.535	p.R179C	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897	tier1	-	-	39	0	0.00	42	12	21.82
ALAD	0	genome.wustl.edu	37	9	116151931	116151931	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	116151931	116151931	C	A	SNP	ALAD	ENST00000409155	human	ensembl	74_37	-1	known	missense	c.662	p.R221L	1.000	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218				21	0	0.00	24	3	11.11
ALDH1A2	0	genome.wustl.edu	37	15	58430744	58430744	+	RNA	SNP	A	A	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	58430744	58430744	A	C	SNP	ALDH1A2	ENST00000558504	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALDH1A2	HGNC	ENSG00000128918	tier1	-	-	21	0	0.00	32	8	20.00
ALG1	0	genome.wustl.edu	37	16	5125388	5125388	+	Splice_Site	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	16	5125388	5125388	G	A	SNP	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	splice_site	c.391-1	e4-1	1.000	-	-	-	no_errors	ALG1	HGNC	ENSG00000033011	tier1	-	-	34	0	0.00	33	23	41.07
AMMECR1	0	genome.wustl.edu	37	X	109561058	109561060	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	109561058	109561060	CCG	0	DEL	AMMECR1	ENST00000262844	human	ensembl	74_37	-1	known	in_frame_del	c.242_240	p.G82in_frame_del	1.000:1.000:0.999	NULL	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935				15	0	0.00	69	6	8.00
ANKRD36C	0	genome.wustl.edu	37	2	96604645	96604645	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	96604645	96604645	G	A	SNP	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	missense	c.1565	p.T522M	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501	tier1	-	-	123	0	0.00	185	11	5.61
ANKUB1	0	genome.wustl.edu	37	3	149485656	149485656	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	3	149485656	149485656	G	A	SNP	ANKUB1	ENST00000446160	human	ensembl	74_37	-1	known	silent	c.793	p.L265	0.980	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ubiquitin_supergroup	-	no_errors	ANKUB1	HGNC	ENSG00000206199				43	0	0.00	53	3	5.36
ANO4	0	genome.wustl.edu	37	12	101505402	101505402	+	Silent	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	101505402	101505402	C	G	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	silent	c.2364	p.V788	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	tier1	-	-	36	0	0.00	55	10	15.38
APAF1	0	genome.wustl.edu	37	12	99128582	99128582	+	RNA	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	99128582	99128582	A	G	SNP	APAF1	ENST00000547666	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	APAF1	HGNC	ENSG00000120868	tier1	-	-	23	0	0.00	16	24	60.00
ARAP3	0	genome.wustl.edu	37	5	141033939	141033939	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	141033939	141033939	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	missense	c.4213	p.E1405K	1.000	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	tier1	-	-	45	0	0.00	56	14	20.00
ARHGEF39	0	genome.wustl.edu	37	9	35662967	35662967	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	35662967	35662967	G	T	SNP	ARHGEF39	ENST00000378387	human	ensembl	74_37	-1	known	missense	c.649	p.R217S	0.974	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF39	HGNC	ENSG00000137135				36	0	0.00	37	2	5.00
ARL5C	0	genome.wustl.edu	37	17	37318973	37318973	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	37318973	37318973	G	A	SNP	ARL5C	ENST00000269586	human	ensembl	74_37	-1	known	silent	c.246	p.S82	0.999	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5C	HGNC	ENSG00000141748	tier1	-	-	58	0	0.00	37	24	39.34
ASCC2	0	genome.wustl.edu	37	22	30189408	30189408	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	30189408	30189408	G	T	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	nonsense	c.1860	p.Y620*	0.986	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				28	0	0.00	28	2	6.67
ATP8B5P	0	genome.wustl.edu	37	9	35451103	35451104	+	RNA	INS	-	-	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	35451103	35451104	-	A	INS	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.651:0.639	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766	tier1			22	0	0.00	26	4	13.33
ATXN1	0	genome.wustl.edu	37	6	16327921	16327921	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	16327921	16327921	C	A	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.621	p.Q207H	0.022	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				43	0	0.00	45	3	6.25
AVPR1A	0	genome.wustl.edu	37	12	63541286	63541286	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	63541286	63541286	C	A	SNP	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	missense	c.1110	p.K370N	0.116	prints_Vprs_V1A_rcpt	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148	tier1	-	-	52	0	0.00	54	20	27.03
BAI2	0	genome.wustl.edu	37	1	32222184	32222184	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	32222184	32222184	C	T	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.254	p.R85H	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753	tier1	-	-	56	0	0.00	39	11	22.00
BCL9L	0	genome.wustl.edu	37	11	118770824	118770824	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	118770824	118770824	G	T	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.3208	p.P1070T	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				57	0	0.00	32	4	11.11
BMP6	0	genome.wustl.edu	37	6	7845488	7845488	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	7845488	7845488	G	T	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.780	p.K260N	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				45	0	0.00	62	4	6.06
C5orf42	0	genome.wustl.edu	37	5	37198846	37198846	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	37198846	37198846	C	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.3630	p.W1210C	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	tier1	-	-	54	0	0.00	70	4	5.41
C6orf118	0	genome.wustl.edu	37	6	165693522	165693522	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	165693522	165693522	G	T	SNP	C6orf118	ENST00000491176	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6orf118	HGNC	ENSG00000112539	tier1	-	-	30	0	0.00	56	4	6.67
C6orf222	0	genome.wustl.edu	37	6	36290146	36290146	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	36290146	36290146	G	T	SNP	C6orf222	ENST00000437635	human	ensembl	74_37	-1	known	silent	c.1545	p.S515	0.713	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325				62	0	0.00	66	4	5.71
CACNA1B	0	genome.wustl.edu	37	9	140777281	140777281	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	140777281	140777281	G	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.476	p.G159V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				118	0	0.00	88	5	5.38
CARD10	0	genome.wustl.edu	37	22	37891912	37891912	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	37891912	37891912	C	A	SNP	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	missense	c.2158	p.D720Y	0.972	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065				34	0	0.00	37	2	5.13
CASZ1	0	genome.wustl.edu	37	1	10707929	10707929	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	10707929	10707929	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.3426	p.S1142	0.560	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				53	0	0.00	67	4	5.63
CCDC103	0	genome.wustl.edu	37	17	42980014	42980015	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	42980014	42980015	AG	-	DEL	CCDC103	ENST00000410006	human	ensembl	74_37	+1	known	frame_shift_del	c.558_559	p.S190fs	0.000:0.999	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131	tier1			36	0	0.00	20	4	16.67
CCDC151	0	genome.wustl.edu	37	19	11537295	11537295	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	11537295	11537295	C	G	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	missense	c.811	p.E271Q	0.849	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003	tier1	-	-	39	0	0.00	32	8	20.00
CCDC180	0	genome.wustl.edu	37	9	100133895	100133895	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	100133895	100133895	G	T	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	+1	known	missense	c.4639	p.G1547C	0.002	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816				45	0	0.00	30	2	6.25
CCDC65	0	genome.wustl.edu	37	12	49298842	49298842	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	49298842	49298842	G	C	SNP	CCDC65	ENST00000266984	human	ensembl	74_37	+1	known	missense	c.246	p.E82D	1.000	NULL	NULL	-	no_errors	CCDC65	HGNC	ENSG00000139537	tier1	-	-	25	0	0.00	37	18	32.73
CDH18	0	genome.wustl.edu	37	5	19721493	19721493	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	19721493	19721493	G	T	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	silent	c.606	p.L202	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				66	0	0.00	68	4	5.56
CDHR3	0	genome.wustl.edu	37	7	105603730	105603730	+	RNA	SNP	T	T	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	105603730	105603730	T	A	SNP	CDHR3	ENST00000461766	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDHR3	HGNC	ENSG00000128536	tier1	-	-	42	0	0.00	24	11	31.43
CEP250	0	genome.wustl.edu	37	20	34084539	34084539	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	34084539	34084539	G	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.3301	p.A1101S	0.931	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	tier1	-	-	48	0	0.00	71	4	5.33
CHMP1A	0	genome.wustl.edu	37	16	89720321	89720321	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	16	89720321	89720321	G	T	SNP	CHMP1A	ENST00000397901	human	ensembl	74_37	-1	known	missense	c.18	p.F6L	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP1A	HGNC	ENSG00000131165	tier1	-	-	51	0	0.00	57	6	9.52
CHPF	0	genome.wustl.edu	37	2	220404553	220404553	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	220404553	220404553	C	T	SNP	CHPF	ENST00000243776	human	ensembl	74_37	-1	known	missense	c.1880	p.R627H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989				18	0	0.00	16	4	20.00
CLCNKA	0	genome.wustl.edu	37	1	16360282	16360282	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	16360282	16360282	G	T	SNP	CLCNKA	ENST00000464764	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CLCNKA	HGNC	ENSG00000186510	tier1	-	-	30	0	0.00	39	4	9.30
CNST	0	genome.wustl.edu	37	1	246811175	246811175	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	246811175	246811175	G	C	SNP	CNST	ENST00000366513	human	ensembl	74_37	+1	known	missense	c.1672	p.D558H	0.761	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	tier1	-	-	17	0	0.00	21	6	22.22
CNTLN	0	genome.wustl.edu	37	9	17236494	17236494	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	17236494	17236494	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.757	p.R253C	0.541	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				31	0	0.00	13	2	13.33
CNTNAP2	0	genome.wustl.edu	37	7	148114542	148114542	+	RNA	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	148114542	148114542	T	C	SNP	CNTNAP2	ENST00000463592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1	-	-	19	0	0.00	41	18	30.51
COL6A3	0	genome.wustl.edu	37	2	238232763	238232763	+	RNA	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	238232763	238232763	C	A	SNP	COL6A3	ENST00000473258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	COL6A3	HGNC	ENSG00000163359	tier1	-	-	65	0	0.00	89	8	8.25
CPSF6	0	genome.wustl.edu	37	12	69656329	69656329	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	69656329	69656329	G	T	SNP	CPSF6	ENST00000266679	human	ensembl	74_37	+1	known	missense	c.1757	p.R586L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605				41	0	0.00	25	3	10.71
CR2	0	genome.wustl.edu	37	1	207639910	207639910	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	207639910	207639910	G	A	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	missense	c.98	p.R33Q	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	tier1	-	-	47	0	0.00	89	18	16.82
CREBBP	0	genome.wustl.edu	37	16	3820668	3820668	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	16	3820668	3820668	G	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.2783	p.P928Q	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	tier1	-	-	35	0	0.00	53	4	7.02
CRYBG3	0	genome.wustl.edu	37	3	97599990	97599990	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	3	97599990	97599990	G	T	SNP	CRYBG3	ENST00000182096	human	ensembl	74_37	+1	known	missense	c.1235	p.R412L	0.593	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200				28	0	0.00	47	4	7.84
CUX2	0	genome.wustl.edu	37	12	111758235	111758237	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	111758235	111758237	TCC	-	DEL	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	in_frame_del	c.2422_2424	p.S811in_frame_del	1.000:1.000:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	tier1			18	0	0.00	20	4	16.67
CXCR4	0	genome.wustl.edu	37	2	136873012	136873012	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	136873012	136873012	G	C	SNP	CXCR4	ENST00000409817	human	ensembl	74_37	-1	known	missense	c.498	p.I166M	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Chemokine_CXCR4_N_dom,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CXCR4	HGNC	ENSG00000121966	tier1	-	-	27	0	0.00	21	15	41.67
CYFIP2	0	genome.wustl.edu	37	5	156727761	156727761	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	156727761	156727761	G	T	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	silent	c.426	p.R142	0.122	pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				21	0	0.00	29	3	9.38
DAXX	0	genome.wustl.edu	37	6	33286968	33286968	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	33286968	33286968	C	G	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.1969	p.E657Q	0.000	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	tier1	-	-	27	0	0.00	39	4	9.30
DCAF13	0	genome.wustl.edu	37	8	104439377	104439377	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	104439377	104439377	G	A	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.977	p.C326Y	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934	tier1	-	-	49	0	0.00	81	23	22.12
DHX8	0	genome.wustl.edu	37	17	41582146	41582146	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	41582146	41582146	C	T	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	nonsense	c.1681	p.Q561*	1.000	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	tier1	-	-	46	0	0.00	30	25	44.64
DIP2A	0	genome.wustl.edu	37	21	47954536	47954536	+	Silent	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	21	47954536	47954536	A	G	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.1581	p.T527	0.029	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	tier1	-	-	54	0	0.00	37	4	9.76
DMXL1	0	genome.wustl.edu	37	5	118484613	118484613	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	118484613	118484613	G	T	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	nonsense	c.3091	p.E1031*	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				17	0	0.00	35	2	5.41
DNAH5	0	genome.wustl.edu	37	5	13810233	13810233	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	13810233	13810233	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.7544	p.T2515M	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	-	-	40	0	0.00	41	15	26.79
DST	0	genome.wustl.edu	37	6	56480403	56480403	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	56480403	56480403	G	T	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.7862	p.A2621D	0.997	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	49	0	0.00	79	5	5.95
DST	0	genome.wustl.edu	37	6	56417998	56417998	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	56417998	56417998	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.15499	p.P5167S	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				44	0	0.00	70	4	5.41
EIF2AK1	0	genome.wustl.edu	37	7	6066493	6066493	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	6066493	6066493	G	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	missense	c.1630	p.Q544K	0.472	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	tier1	-	-	35	0	0.00	54	4	6.90
EIF4ENIF1	0	genome.wustl.edu	37	22	31836038	31836038	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	31836038	31836038	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.2786	p.P929L	0.997	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	tier1	-	-	35	0	0.00	30	22	42.31
ENSG00000167765	0	genome.wustl.edu	37	19	52097516	52097516	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	52097516	52097516	G	A	SNP	ENSG00000167765	ENST00000301439	human	ensembl	74_37	-1	known	missense	c.59	p.A20V	0.002	NULL	NULL	-	no_errors	AC018755.1	Clone_based_ensembl_gene	ENSG00000167765				66	0	0.00	74	4	5.13
ENSG00000221060	0	genome.wustl.edu	37	14	70270921	70270922	+	RNA	INS	-	-	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	70270921	70270922	-	T	INS	ENSG00000221060	ENST00000408133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	SNORA11	RFAM	ENSG00000221060	tier1			20	0	0.00	34	5	12.82
ENSG00000223579	0	genome.wustl.edu	37	22	20639449	20639450	+	RNA	INS	-	-	TA			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	20639449	20639450	0	TA	INS	ENSG00000223579	ENST00000577456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.984:0.986	-	-	-	no_errors	AC011718.2	Clone_based_vega_gene	ENSG00000223579				13	0	0.00	9	4	30.77
ENSG00000225241	0	genome.wustl.edu	37	1	144615246	144615247	+	RNA	INS	-	-	AG			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	144615246	144615247	-	AG	INS	ENSG00000225241	ENST00000421407	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030:0.047	-	-	-	no_errors	RP11-640M9.2	Clone_based_vega_gene	ENSG00000225241	tier1			19	0	0.00	29	7	19.44
ENSG00000244050	0	genome.wustl.edu	37	12	8359249	8359249	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	8359249	8359249	G	T	SNP	ENSG00000244050	ENST00000542600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-266K4.1	Clone_based_vega_gene	ENSG00000244050	tier1	-	-	173	0	0.00	285	22	7.17
ENSG00000255686	0	genome.wustl.edu	37	12	117890935	117890935	+	RNA	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	117890935	117890935	C	T	SNP	ENSG00000255686	ENST00000540161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	RP11-227B21.2	Clone_based_vega_gene	ENSG00000255686	tier1	-	-	25	0	0.00	27	4	12.90
ENSG00000257931	0	genome.wustl.edu	37	14	19969402	19969402	+	RNA	DEL	T	T	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	19969402	19969402	T	-	DEL	ENSG00000257931	ENST00000547399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.163	-	-	-	no_errors	CTD-2311B13.7	Clone_based_vega_gene	ENSG00000257931	tier1			27	0	0.00	45	15	25.00
ENSG00000258443	0	genome.wustl.edu	37	14	73987345	73987345	+	RNA	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	73987345	73987345	A	G	SNP	ENSG00000258443	ENST00000553394	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-414A15.11	Clone_based_vega_gene	ENSG00000258443	tier1	-	-	21	0	0.00	11	9	45.00
ENSG00000259648	0	genome.wustl.edu	37	14	68083198	68083198	+	RNA	DEL	A	A	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	68083198	68083198	A	-	DEL	ENSG00000259648	ENST00000559968	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-643G16.4	Clone_based_vega_gene	ENSG00000259648	tier1			12	0	0.00	27	4	12.90
ENTHD1	0	genome.wustl.edu	37	22	40140021	40140021	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	40140021	40140021	T	C	SNP	ENTHD1	ENST00000325157	human	ensembl	74_37	-1	known	missense	c.1487	p.N496S	0.000	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	tier1	-	-	21	0	0.00	62	14	18.42
ENTPD5	0	genome.wustl.edu	37	14	74440671	74440671	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	74440671	74440671	C	T	SNP	ENTPD5	ENST00000334696	human	ensembl	74_37	-1	known	silent	c.795	p.G265	0.998	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097				33	0	0.00	66	4	5.71
EP300	0	genome.wustl.edu	37	22	41558785	41558785	+	Splice_Site	DEL	T	T	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	41558785	41558785	T	-	DEL	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site_del	c.3728+2	e21+2	1.000	-	-	-	no_errors	EP300	HGNC	ENSG00000100393	tier1			44	0	0.00	30	12	28.57
EP300	0	genome.wustl.edu	37	22	41558785	41558785	+	Splice_Site	SNP	T	T	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	41558785	41558785	T	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site	c.3728+2	e21+2	1.000	-	-	-	no_errors	EP300	HGNC	ENSG00000100393				44	0	0.00	17	13	30.95
EP400	0	genome.wustl.edu	37	12	132547096	132547096	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	132547096	132547096	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8292	p.Q2764	0.957	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	rs74479394	-	50	0	0.00	41	5	10.87
EPB41L2	0	genome.wustl.edu	37	6	131191073	131191075	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	131191073	131191075	CTG	-	DEL	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	in_frame_del	c.2237_2235	p.S746in_frame_del	1.000:1.000:1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	tier1			12	0	0.00	8	3	27.27
FAM46D	0	genome.wustl.edu	37	X	79698376	79698376	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	79698376	79698376	C	A	SNP	FAM46D	ENST00000308293	human	ensembl	74_37	+1	known	missense	c.338	p.P113Q	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	tier1	-	-	9	0	0.00	7	38	84.44
FAM91A1	0	genome.wustl.edu	37	8	124790938	124790938	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	124790938	124790938	A	G	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	missense	c.475	p.I159V	0.008	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	tier1	-	-	68	0	0.00	138	25	15.24
FAT3	0	genome.wustl.edu	37	11	92532036	92532036	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	92532036	92532036	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.5857	p.L1953M	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	25	0	0.00	10	14	58.33
FBN2	0	genome.wustl.edu	37	5	127866299	127866299	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	127866299	127866299	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.425	p.G142E	1.000	pirsf_FBN	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	tier1	-	-	45	0	0.00	39	10	20.41
FKBPL	0	genome.wustl.edu	37	6	32097535	32097535	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	32097535	32097535	G	T	SNP	FKBPL	ENST00000375156	human	ensembl	74_37	-1	known	missense	c.23	p.T8K	0.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FKBPL	HGNC	ENSG00000204315	tier1	-	-	37	0	0.00	65	4	5.80
FLOT2	0	genome.wustl.edu	37	17	27210170	27210170	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	27210170	27210170	T	-	DEL	FLOT2	ENST00000394908	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.N101fs	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589	tier1			42	0	0.00	37	2	5.13
FOCAD	0	genome.wustl.edu	37	9	20951011	20951011	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	20951011	20951011	G	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.3965	p.G1322V	1.000	pfam_DUF3028,superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352	tier1	-	-	76	0	0.00	68	4	5.56
FOXF2	0	genome.wustl.edu	37	6	1390978	1390980	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	1390978	1390980	CAC	-	DEL	FOXF2	ENST00000259806	human	ensembl	74_37	+1	known	in_frame_del	c.796_798	p.H269in_frame_del	0.969:0.975:0.979	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273	tier1			16	0	0.00	19	4	17.39
FSIP2	0	genome.wustl.edu	37	2	186655921	186655921	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	186655921	186655921	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.4325	p.L1442S	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	11	0	0.00	30	24	44.44
GCM1	0	genome.wustl.edu	37	6	52993048	52993048	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	52993048	52993048	G	T	SNP	GCM1	ENST00000259803	human	ensembl	74_37	-1	known	missense	c.1267	p.H423N	0.787	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270				25	0	0.00	31	3	8.82
GGT3P	0	genome.wustl.edu	37	22	18769843	18769843	+	RNA	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	18769843	18769843	T	C	SNP	GGT3P	ENST00000412448	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.856	-	-	-	no_errors	GGT3P	HGNC	ENSG00000197421				46	0	0.00	68	4	5.56
GNA12	0	genome.wustl.edu	37	7	2770886	2770886	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	2770886	2770886	C	T	SNP	GNA12	ENST00000275364	human	ensembl	74_37	-1	known	missense	c.1075	p.V359I	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_12	-	no_errors	GNA12	HGNC	ENSG00000146535	tier1	-	-	35	0	0.00	67	4	5.63
GNAS	0	genome.wustl.edu	37	20	57467171	57467171	+	RNA	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	57467171	57467171	G	C	SNP	GNAS	ENST00000476935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	GNAS	HGNC	ENSG00000087460	tier1	-	-	33	0	0.00	19	15	44.12
GNB5	0	genome.wustl.edu	37	15	52425597	52425597	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	52425597	52425597	C	T	SNP	GNB5	ENST00000261837	human	ensembl	74_37	-1	known	missense	c.841	p.E281K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB5	HGNC	ENSG00000069966	tier1	-	-	59	0	0.00	29	30	50.85
GPR135	0	genome.wustl.edu	37	14	59930820	59930820	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	59930820	59930820	C	T	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	silent	c.1125	p.L375	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619	tier1	-	-	69	0	0.00	78	5	6.02
GPRASP2	0	genome.wustl.edu	37	X	101970762	101970762	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	101970762	101970762	G	T	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.965	p.R322I	0.832	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	tier1	-	-	36	0	0.00	67	4	5.63
GRIN3A	0	genome.wustl.edu	37	9	104499884	104499884	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	104499884	104499884	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	silent	c.378	p.D126	0.601	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	tier1	-	-	24	0	0.00	15	6	28.57
HFM1	0	genome.wustl.edu	37	1	91727919	91727919	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	91727919	91727919	G	A	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	silent	c.4117	p.L1373	0.639	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669	tier1	-	-	90	0	0.00	103	47	31.33
HIC1	0	genome.wustl.edu	37	17	1961209	1961209	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	1961209	1961209	G	T	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	nonsense	c.1282	p.E428*	0.994	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				53	0	0.00	64	4	5.88
HIST1H1C	0	genome.wustl.edu	37	6	26056024	26056024	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	26056024	26056024	C	T	SNP	HIST1H1C	ENST00000343677	human	ensembl	74_37	-1	known	silent	c.633	p.K211	1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	tier1	-	-	52	0	0.00	23	17	42.50
HIST1H2AB	0	genome.wustl.edu	37	6	26033433	26033433	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	26033433	26033433	C	T	SNP	HIST1H2AB	ENST00000259791	human	ensembl	74_37	-1	known	missense	c.364	p.E122K	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AB	HGNC	ENSG00000137259	tier1	-	-	68	0	0.00	84	5	5.62
HIVEP2	0	genome.wustl.edu	37	6	143081380	143081380	+	Silent	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	143081380	143081380	T	C	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.6045	p.R2015	0.878	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	tier1	-	-	23	0	0.00	21	22	51.16
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				51	0	0.00	54	3	5.26
ICAM5	0	genome.wustl.edu	37	19	10403825	10403825	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	10403825	10403825	G	A	SNP	ICAM5	ENST00000221980	human	ensembl	74_37	+1	known	silent	c.1368	p.L456	0.932	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376	tier1	-	-	56	0	0.00	66	4	5.71
IGF1R	0	genome.wustl.edu	37	15	99250893	99250893	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	99250893	99250893	A	G	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.197	p.K66R	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	tier1	-	-	53	0	0.00	37	4	9.76
INO80	0	genome.wustl.edu	37	15	41362726	41362726	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	41362726	41362726	G	A	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.1625	p.A542V	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	tier1	-	-	64	0	0.00	66	4	5.71
INPP5J	0	genome.wustl.edu	37	22	31521386	31521386	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	31521386	31521386	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	missense	c.661	p.A221T	0.038	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	tier1	-	-	68	0	0.00	59	4	6.35
ISLR	0	genome.wustl.edu	37	15	74467244	74467244	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	74467244	74467244	G	T	SNP	ISLR	ENST00000249842	human	ensembl	74_37	+1	known	silent	c.45	p.L15	0.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ISLR	HGNC	ENSG00000129009				34	0	0.00	37	2	5.13
KATNBL1P6	0	genome.wustl.edu	37	6	147123946	147123946	+	RNA	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	147123946	147123946	T	C	SNP	KATNBL1P6	ENST00000562413	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KATNBL1P6	HGNC	ENSG00000228283	tier1	-	-	82	0	0.00	92	71	43.56
KCNE1L	0	genome.wustl.edu	37	X	108868055	108868055	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	108868055	108868055	G	T	SNP	KCNE1L	ENST00000372101	human	ensembl	74_37	-1	known	silent	c.195	p.L65	1.000	NULL	NULL	-	no_errors	KCNE1L	HGNC	ENSG00000176076				17	0	0.00	37	4	9.76
KDM2A	0	genome.wustl.edu	37	11	67023792	67023792	+	RNA	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	67023792	67023792	C	G	SNP	KDM2A	ENST00000524657	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1	-	-	24	0	0.00	40	19	32.20
KDM5C	0	genome.wustl.edu	37	X	53223826	53223826	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	53223826	53223826	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.3533	p.S1178L	0.005	superfamily_Znf_FYVE_PHD	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	tier1	-	-	44	0	0.00	19	21	52.50
KIAA0825	0	genome.wustl.edu	37	5	93798218	93798218	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	93798218	93798218	G	A	SNP	KIAA0825	ENST00000427991	human	ensembl	74_37	-1	known	missense	c.2120	p.T707I	0.895	NULL	NULL	-	no_errors	KIAA0825	HGNC	ENSG00000185261				20	0	0.00	53	4	7.02
KLHL4	0	genome.wustl.edu	37	X	86873036	86873036	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	86873036	86873036	A	T	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	nonsense	c.829	p.K277*	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	tier1	-	-	23	0	0.00	47	19	28.36
KLK11	0	genome.wustl.edu	37	19	51527571	51527571	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	51527571	51527571	G	T	SNP	KLK11	ENST00000391804	human	ensembl	74_37	-1	known	missense	c.268	p.L90I	0.569	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK11	HGNC	ENSG00000167757				40	0	0.00	69	4	5.48
KMT2D	0	genome.wustl.edu	37	12	49431850	49431850	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	49431850	49431850	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.9289	p.E3097K	0.997	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1	-	-	101	0	0.00	127	7	5.19
KRT77	0	genome.wustl.edu	37	12	53086350	53086350	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	53086350	53086350	G	T	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	missense	c.1282	p.L428M	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182	tier1	-	-	36	0	0.00	22	15	40.54
KSR1	0	genome.wustl.edu	37	17	25931751	25931751	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	25931751	25931751	G	T	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	silent	c.1677	p.A559	0.005	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068	tier1	-	-	56	0	0.00	74	5	6.33
LINC00238	0	genome.wustl.edu	37	14	66959557	66959557	+	RNA	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	66959557	66959557	C	G	SNP	LINC00238	ENST00000411796	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00238	HGNC	ENSG00000196553	tier1	-	-	39	0	0.00	43	19	30.65
LINC00272	0	genome.wustl.edu	37	1	182377037	182377037	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	182377037	182377037	G	T	SNP	LINC00272	ENST00000367563	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.523	-	-	-	no_errors	LINC00272	HGNC	ENSG00000203729				33	0	0.00	63	4	5.97
LOC100506469	0	genome.wustl.edu	37	19	36033799	36033799	+	RNA	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	36033799	36033799	G	A	SNP	LOC100506469	ENST00000588286	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.154	-	-	-	no_errors	AD000090.2	Clone_based_vega_gene	ENSG00000236144	tier1	-	-	36	0	0.00	37	4	9.76
LOC100507377	0	genome.wustl.edu	37	12	74686447	74686447	+	RNA	DEL	G	G	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	74686447	74686447	G	-	DEL	LOC100507377	ENST00000548427	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.190	-	-	-	no_errors	RP11-81H3.2	Clone_based_vega_gene	ENSG00000251138	tier1			20	0	0.00	12	5	29.41
LOC101929676	0	genome.wustl.edu	37	4	119552234	119552234	+	RNA	SNP	A	A	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	4	119552234	119552234	A	C	SNP	LOC101929676	ENST00000567913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	RP11-384K6.6	Clone_based_vega_gene	ENSG00000260404				37	0	0.00	39	4	9.30
LOC645752	0	genome.wustl.edu	37	15	78208199	78208199	+	RNA	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	78208199	78208199	C	T	SNP	LOC645752	ENST00000563349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776	tier1	-	-	125	0	0.00	111	9	7.50
LPGAT1	0	genome.wustl.edu	37	1	211956837	211956837	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	211956837	211956837	G	C	SNP	LPGAT1	ENST00000366997	human	ensembl	74_37	-1	known	missense	c.461	p.S154C	1.000	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPGAT1	HGNC	ENSG00000123684	tier1	-	-	22	0	0.00	36	11	23.40
LPIN3	0	genome.wustl.edu	37	20	39986953	39986953	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	39986953	39986953	G	T	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	nonsense	c.2269	p.G757*	0.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				27	0	0.00	45	4	8.16
LPPR1	0	genome.wustl.edu	37	9	104071531	104071531	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	104071531	104071531	G	T	SNP	LPPR1	ENST00000374874	human	ensembl	74_37	+1	known	missense	c.424	p.V142L	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR1	Uniprot_gn	ENSG00000148123				37	0	0.00	51	4	7.27
LRRC37A3	0	genome.wustl.edu	37	17	62855652	62855652	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	62855652	62855652	T	C	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	missense	c.4612	p.K1538E	0.006	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				152	0	0.00	196	14	6.67
LRRC4B	0	genome.wustl.edu	37	19	51021262	51021262	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	51021262	51021262	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1708	p.D570N	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409	tier1	-	-	10	0	0.00	6	4	40.00
LRRIQ1	0	genome.wustl.edu	37	12	85638645	85638646	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	85638645	85638646	-	A	INS	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_ins	c.5095_5096	p.N1702fs	1.000:1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	tier1			30	0	0.00	37	5	11.90
LSM14B	0	genome.wustl.edu	37	20	60704986	60704986	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	60704986	60704986	G	A	SNP	LSM14B	ENST00000279068	human	ensembl	74_37	+1	known	silent	c.573	p.Q191	0.983	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657				56	0	0.00	73	4	5.13
MALAT1	0	genome.wustl.edu	37	11	65273214	65273214	+	RNA	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	65273214	65273214	G	C	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1	-	-	31	0	0.00	60	7	10.45
MALAT1	0	genome.wustl.edu	37	11	65270090	65270090	+	RNA	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	65270090	65270090	C	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.929	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				20	0	0.00	66	7	9.33
MALAT1	0	genome.wustl.edu	37	11	65270091	65270091	+	RNA	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	65270091	65270091	T	C	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				8	0	0.00	46	8	8.16
MED13	0	genome.wustl.edu	37	17	60059880	60059880	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	60059880	60059880	G	A	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.3484	p.R1162C	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				24	0	0.00	28	2	6.67
MEF2A	0	genome.wustl.edu	37	15	100252738	100252739	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	100252738	100252739	AG	-	DEL	MEF2A	ENST00000338042	human	ensembl	74_37	+1	known	frame_shift_del	c.1283_1284	p.Q428fs	0.928:0.862	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305	tier1			51	0	0.00	49	5	9.26
MIA3	0	genome.wustl.edu	37	1	222791507	222791507	+	Silent	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	222791507	222791507	C	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	silent	c.55	p.R19	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	tier1	-	-	10	0	0.00	4	6	60.00
MIR3125	0	genome.wustl.edu	37	2	12877501	12877501	+	RNA	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	12877501	12877501	G	A	SNP	MIR3125	ENST00000579927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR3125	HGNC	ENSG00000264370				70	0	0.00	95	8	7.77
MOCS2	0	genome.wustl.edu	37	5	52396306	52396306	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	52396306	52396306	C	T	SNP	MOCS2	ENST00000396954	human	ensembl	74_37	-1	known	missense	c.436	p.A146T	1.000	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	-	no_errors	MOCS2	HGNC	ENSG00000164172	tier1	-	-	36	0	0.00	60	4	6.25
MORF4L1	0	genome.wustl.edu	37	15	79189830	79189830	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	79189830	79189830	G	T	SNP	MORF4L1	ENST00000561171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MORF4L1	HGNC	ENSG00000185787	tier1	-	-	35	0	0.00	56	5	8.20
MTHFR	0	genome.wustl.edu	37	1	11861267	11861267	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	11861267	11861267	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	silent	c.549	p.L183	1.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				24	0	0.00	34	2	5.56
MYADML	0	genome.wustl.edu	37	2	33951529	33951530	+	RNA	INS	-	-	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	33951529	33951530	-	T	INS	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1			15	0	0.00	20	12	37.50
MYCBP2	0	genome.wustl.edu	37	13	77641876	77641876	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	77641876	77641876	C	G	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.12295	p.D4099H	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	tier1	-	-	50	0	0.00	22	52	70.27
MYOD1	0	genome.wustl.edu	37	11	17741729	17741729	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	17741729	17741729	C	T	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	missense	c.400	p.R134C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152	tier1	-	-	55	0	0.00	31	4	11.43
NAALAD2	0	genome.wustl.edu	37	11	89882266	89882266	+	Silent	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	89882266	89882266	C	A	SNP	NAALAD2	ENST00000534061	human	ensembl	74_37	+1	known	silent	c.474	p.G158	0.482	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616	tier1	-	-	117	0	0.00	59	81	57.86
NAP1L4	0	genome.wustl.edu	37	11	2981115	2981115	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	2981115	2981115	C	T	SNP	NAP1L4	ENST00000380542	human	ensembl	74_37	-1	known	missense	c.631	p.E211K	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L4	HGNC	ENSG00000205531	tier1	-	-	63	0	0.00	29	51	63.75
NBEAL1	0	genome.wustl.edu	37	2	204053201	204053201	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	204053201	204053201	G	C	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.6625	p.E2209Q	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	tier1	-	-	48	0	0.00	69	20	22.47
NCAPG	0	genome.wustl.edu	37	4	17839321	17839321	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	4	17839321	17839321	C	T	SNP	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	missense	c.2363	p.S788F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805				36	0	0.00	37	2	5.13
NCOA3	0	genome.wustl.edu	37	20	46279857	46279857	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	46279857	46279857	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.3783	p.Q1261	0.971	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				46	0	0.00	84	5	5.62
NEFM	0	genome.wustl.edu	37	8	24771823	24771823	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	24771823	24771823	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.517	p.L173	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	tier1	-	-	62	0	0.00	65	4	5.80
NELFE	0	genome.wustl.edu	37	6	31922591	31922591	+	Silent	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	31922591	31922591	A	G	SNP	NELFE	ENST00000375429	human	ensembl	74_37	-1	known	silent	c.483	p.G161	0.508	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NELFE	HGNC	ENSG00000204356				22	0	0.00	29	4	12.12
NLRP1	0	genome.wustl.edu	37	17	5418260	5418260	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	5418260	5418260	C	G	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	missense	c.4236	p.Q1412H	0.951	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	tier1	-	-	38	0	0.00	27	15	35.71
NME7	0	genome.wustl.edu	37	1	169292492	169292493	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	169292492	169292493	-	A	INS	NME7	ENST00000367811	human	ensembl	74_37	-1	known	frame_shift_ins	c.141_140	p.L47fs	0.998:1.000	smart_Uncharacterised_DM10,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156	tier1			32	0	0.00	37	6	13.95
NOP58	0	genome.wustl.edu	37	2	203149089	203149089	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	203149089	203149089	A	T	SNP	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	missense	c.319	p.I107F	1.000	NULL	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044	tier1	-	-	46	0	0.00	70	25	26.32
NPR3	0	genome.wustl.edu	37	5	32739001	32739001	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	32739001	32739001	C	T	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	silent	c.924	p.H308	0.946	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				33	0	0.00	47	3	6.00
NRDE2	0	genome.wustl.edu	37	14	90778760	90778760	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	90778760	90778760	G	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.535	p.L179I	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				36	0	0.00	45	4	8.16
NUP107	0	genome.wustl.edu	37	12	69126365	69126365	+	RNA	SNP	T	T	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	69126365	69126365	T	A	SNP	NUP107	ENST00000401003	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP107	HGNC	ENSG00000111581	tier1	-	-	43	0	0.00	68	6	8.11
NUP153	0	genome.wustl.edu	37	6	17706534	17706534	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	17706534	17706534	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.85	p.Y29D	1.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	tier1	-	-	123	0	0.00	66	58	46.77
NYAP2	0	genome.wustl.edu	37	2	226447460	226447460	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	226447460	226447460	G	C	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1327	p.G443R	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	tier1	-	-	67	0	0.00	41	33	44.59
NYNRIN	0	genome.wustl.edu	37	14	24880348	24880348	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	24880348	24880348	G	T	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	silent	c.2481	p.R827	0.936	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	tier1	-	-	50	0	0.00	30	4	11.76
OPTN	0	genome.wustl.edu	37	10	13164403	13164403	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	13164403	13164403	G	C	SNP	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	missense	c.798	p.K266N	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240	tier1	-	-	76	0	0.00	87	6	6.45
OVCA2	0	genome.wustl.edu	37	17	1945944	1945944	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	1945944	1945944	A	T	SNP	OVCA2	ENST00000572195	human	ensembl	74_37	+1	known	missense	c.230	p.E77V	0.152	pfam_Serine_hydrolase_FSH	pfam_Serine_hydrolase_FSH,pfam_PLipase/COase/thioEstase	-	no_errors	OVCA2	HGNC	ENSG00000262664	tier1	-	-	28	0	0.00	27	14	34.15
PAXBP1	0	genome.wustl.edu	37	21	34134551	34134551	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	21	34134551	34134551	G	T	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	missense	c.727	p.P243T	0.992	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				23	0	0.00	51	4	7.27
PCDHA9	0	genome.wustl.edu	37	5	140230375	140230375	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	140230375	140230375	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	silent	c.2295	p.Q765	0.240	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	tier1	-	-	81	0	0.00	48	42	46.67
PCDHB3	0	genome.wustl.edu	37	5	140481751	140481751	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	140481751	140481751	C	G	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1518	p.I506M	0.969	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	tier1	-	-	257	0	0.00	191	58	23.29
PCDHGC5	0	genome.wustl.edu	37	5	140870755	140870755	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	140870755	140870755	G	T	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	missense	c.1948	p.D650Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764	tier1	-	-	41	0	0.00	22	5	18.52
PCLO	0	genome.wustl.edu	37	7	82583637	82583637	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	82583637	82583637	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6632	p.T2211I	0.987	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				18	0	0.00	33	2	5.71
PDZD2	0	genome.wustl.edu	37	5	32037378	32037378	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	32037378	32037378	G	T	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.1449	p.E483D	0.996	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				40	0	0.00	38	2	5.00
PDZD7	0	genome.wustl.edu	37	10	102778670	102778670	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	102778670	102778670	C	T	SNP	PDZD7	ENST00000370215	human	ensembl	74_37	-1	known	silent	c.1233	p.A411	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862	tier1	-	-	44	0	0.00	28	8	22.22
PDZK1	0	genome.wustl.edu	37	1	145752451	145752451	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	145752451	145752451	G	C	SNP	PDZK1	ENST00000344770	human	ensembl	74_37	+1	known	missense	c.484	p.D162H	0.021	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZK1	HGNC	ENSG00000174827	tier1	-	-	122	0	0.00	130	62	32.29
PLEC	0	genome.wustl.edu	37	8	144996545	144996545	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	144996545	144996545	C	G	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.7855	p.E2619Q	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	tier1	-	-	45	0	0.00	35	14	28.57
PLEC	0	genome.wustl.edu	37	8	144996723	144996723	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	144996723	144996723	C	G	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.7785	p.E2595D	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	tier1	-	-	65	0	0.00	69	28	28.87
POMZP3	0	genome.wustl.edu	37	7	76254993	76254993	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	76254993	76254993	G	A	SNP	POMZP3	ENST00000310842	human	ensembl	74_37	-1	known	nonsense	c.73	p.Q25*	0.116	NULL	pfam_ZP_dom	-	no_errors	POMZP3	HGNC	ENSG00000146707	tier1	-	-	95	0	0.00	107	46	29.49
PPARGC1A	0	genome.wustl.edu	37	4	23816165	23816165	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	4	23816165	23816165	G	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.941	p.P314Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				40	0	0.00	37	2	5.13
PRDM9	0	genome.wustl.edu	37	5	23527626	23527626	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	23527626	23527626	G	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.2429	p.G810V	0.904	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	tier1	-	-	87	0	0.00	52	28	34.57
PRKAA1	0	genome.wustl.edu	37	5	40775593	40775593	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	5	40775593	40775593	G	A	SNP	PRKAA1	ENST00000354209	human	ensembl	74_37	-1	known	silent	c.282	p.I94	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356				24	0	0.00	41	3	6.82
PROM2	0	genome.wustl.edu	37	2	95943752	95943752	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	95943752	95943752	G	T	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	missense	c.1050	p.E350D	1.000	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				57	0	0.00	85	5	5.56
PTH2	0	genome.wustl.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	49926533	49926533	G	C	SNP	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	missense	c.64	p.L22V	0.132	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538	tier1	rs200733272	-	88	0	0.00	91	5	5.15
PTPN9	0	genome.wustl.edu	37	15	75809693	75809693	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	75809693	75809693	C	T	SNP	PTPN9	ENST00000306726	human	ensembl	74_37	-1	known	silent	c.435	p.Q145	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410	tier1	-	-	42	0	0.00	34	30	46.88
PTPRK	0	genome.wustl.edu	37	6	128383359	128383359	+	RNA	DEL	T	T	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	128383359	128383359	T	-	DEL	PTPRK	ENST00000434424	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1			18	0	0.00	14	2	12.50
RAPGEF5	0	genome.wustl.edu	37	7	22233043	22233043	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	22233043	22233043	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	silent	c.687	p.K229	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237	tier1	-	-	31	0	0.00	24	12	32.43
REPS2	0	genome.wustl.edu	37	X	17165604	17165605	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	17165604	17165605	-	C	INS	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	frame_shift_ins	c.1983_1984	p.*661fs	1.000:0.910	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891	tier1			23	0	0.00	19	29	60.42
RFX3	0	genome.wustl.edu	37	9	3293163	3293163	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	3293163	3293163	G	T	SNP	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	missense	c.645	p.H215Q	1.000	pfam_DNA-bd_RFX	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298	tier1	-	-	87	0	0.00	74	4	5.13
RFX7	0	genome.wustl.edu	37	15	56386365	56386365	+	Silent	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	56386365	56386365	A	G	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	silent	c.3561	p.N1187	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	tier1	-	-	22	0	0.00	12	18	60.00
RMND1	0	genome.wustl.edu	37	6	151766902	151766902	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	151766902	151766902	T	C	SNP	RMND1	ENST00000367303	human	ensembl	74_37	-1	known	missense	c.45	p.I15M	0.106	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	tier1	-	-	21	0	0.00	37	7	15.91
RNF111	0	genome.wustl.edu	37	15	59373162	59373162	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	59373162	59373162	A	G	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	missense	c.1976	p.H659R	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450	tier1	-	-	45	0	0.00	30	19	38.00
RPF1	0	genome.wustl.edu	37	1	84961936	84961936	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	84961936	84961936	C	T	SNP	RPF1	ENST00000370654	human	ensembl	74_37	+1	known	silent	c.891	p.F297	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF1	HGNC	ENSG00000117133	tier1	-	-	14	0	0.00	15	26	63.41
RPL23AP53	0	genome.wustl.edu	37	8	163319	163319	+	RNA	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	163319	163319	C	G	SNP	RPL23AP53	ENST00000606975	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	RPL23AP53	HGNC	ENSG00000223508	tier1	-	-	50	0	0.00	56	12	17.65
RUSC2	0	genome.wustl.edu	37	9	35561273	35561273	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	35561273	35561273	G	C	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.4445	p.G1482A	0.413	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853	tier1	-	-	57	0	0.00	17	31	64.58
SEC16B	0	genome.wustl.edu	37	1	177913774	177913774	+	Silent	SNP	A	A	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	177913774	177913774	A	C	SNP	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	silent	c.1803	p.T601	0.042	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341	tier1	-	-	44	0	0.00	80	17	17.53
SEC31A	0	genome.wustl.edu	37	4	83799895	83799895	+	Silent	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	4	83799895	83799895	C	G	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	silent	c.390	p.V130	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	tier1	-	-	19	0	0.00	20	27	57.45
SGK2	0	genome.wustl.edu	37	20	42195101	42195101	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	42195101	42195101	C	T	SNP	SGK2	ENST00000341458	human	ensembl	74_37	+1	known	missense	c.146	p.P49L	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	tier1	-	-	57	0	0.00	92	12	11.54
SIX4	0	genome.wustl.edu	37	14	61180669	61180669	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	61180669	61180669	C	A	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	missense	c.1802	p.G601V	0.336	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625	tier1	-	-	44	0	0.00	37	21	36.21
SKIDA1	0	genome.wustl.edu	37	10	21805483	21805484	+	In_Frame_Ins	INS	-	-	TCT			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	21805483	21805484	-	TCT	INS	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	in_frame_ins	c.1269_1268	p.427in_frame_insE	0.410:0.996	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592	tier1			46	0	0.00	49	5	9.26
SLC2A6	0	genome.wustl.edu	37	9	136337224	136337224	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	136337224	136337224	G	A	SNP	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	silent	c.1443	p.C481	0.998	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326				76	0	0.00	53	4	7.02
SLITRK4	0	genome.wustl.edu	37	X	142718078	142718078	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	142718078	142718078	C	G	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.847	p.G283R	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	tier1	-	-	35	0	0.00	55	33	37.08
SLITRK5	0	genome.wustl.edu	37	13	88327729	88327729	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	88327729	88327729	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.86	p.A29V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	tier1	-	-	35	0	0.00	34	4	10.53
SMC1B	0	genome.wustl.edu	37	22	45802661	45802661	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	45802661	45802661	G	T	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	silent	c.384	p.V128	0.969	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				45	0	0.00	91	5	5.21
SP2	0	genome.wustl.edu	37	17	46005104	46005104	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	46005104	46005104	G	A	SNP	SP2	ENST00000376741	human	ensembl	74_37	+1	known	missense	c.1756	p.E586K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182	tier1	-	-	32	0	0.00	30	9	23.08
SPATA7	0	genome.wustl.edu	37	14	88859798	88859798	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	88859798	88859798	G	A	SNP	SPATA7	ENST00000393545	human	ensembl	74_37	+1	known	missense	c.156	p.M52I	1.000	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317	tier1	-	-	58	0	0.00	43	9	17.31
SPG11	0	genome.wustl.edu	37	15	44881455	44881455	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	44881455	44881455	G	C	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.4901	p.S1634C	0.996	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133	tier1	-	-	36	0	0.00	38	18	32.14
SPOCD1	0	genome.wustl.edu	37	1	32266183	32266183	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	32266183	32266183	G	T	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	silent	c.1461	p.A487	0.220	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				76	0	0.00	91	5	5.21
SPTA1	0	genome.wustl.edu	37	1	158606438	158606438	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	1	158606438	158606438	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5303	p.A1768V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				36	0	0.00	68	4	5.56
SRRM5	0	genome.wustl.edu	37	19	44116308	44116308	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	44116308	44116308	T	C	SNP	SRRM5	ENST00000526798	human	ensembl	74_37	+1	known	missense	c.80	p.M27T	0.063	NULL	NULL	-	no_errors	SRRM5	HGNC	ENSG00000226763	tier1	-	-	83	0	0.00	49	30	37.97
SSPO	0	genome.wustl.edu	37	7	149486300	149486300	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	149486300	149486300	G	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.826	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	40	0	0.00	34	19	35.85
STAB1	0	genome.wustl.edu	37	3	52551624	52551624	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	3	52551624	52551624	T	C	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.4622	p.L1541P	0.996	pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	tier1	-	-	74	0	0.00	61	4	6.15
STARD9	0	genome.wustl.edu	37	15	42977858	42977858	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	15	42977858	42977858	C	A	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	missense	c.4082	p.P1361H	0.006	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433				65	0	0.00	58	4	6.45
STIP1	0	genome.wustl.edu	37	11	63953435	63953435	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	63953435	63953435	A	T	SNP	STIP1	ENST00000358794	human	ensembl	74_37	+1	putative	missense	c.139	p.S47C	0.001	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439	tier1	-	-	53	0	0.00	41	28	40.58
STK11IP	0	genome.wustl.edu	37	2	220480764	220480764	+	Splice_Site	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	220480764	220480764	A	G	SNP	STK11IP	ENST00000456909	human	ensembl	74_37	+1	novel	splice_site	c.3118-2	e24-2	0.997	-	-	-	no_errors	STK11IP	HGNC	ENSG00000144589	tier1	-	-	26	0	0.00	9	11	55.00
SUCLG1	0	genome.wustl.edu	37	2	84650856	84650857	+	RNA	INS	-	-	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	84650856	84650857	-	T	INS	SUCLG1	ENST00000491123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SUCLG1	HGNC	ENSG00000163541	tier1			28	0	0.00	26	3	10.34
SUMF2	0	genome.wustl.edu	37	7	56145799	56145799	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	7	56145799	56145799	A	G	SNP	SUMF2	ENST00000342190	human	ensembl	74_37	+1	known	missense	c.653	p.K218R	0.001	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF2	HGNC	ENSG00000129103	tier1	-	-	44	0	0.00	35	21	37.50
SUN2	0	genome.wustl.edu	37	22	39138309	39138310	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	39138309	39138310	-	A	INS	SUN2	ENST00000216064	human	ensembl	74_37	-1	known	frame_shift_ins	c.1065_1064	p.Q356fs	0.974:0.944	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242	tier1			25	0	0.00	8	19	70.37
TAF1B	0	genome.wustl.edu	37	2	10073979	10073979	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	10073979	10073979	C	G	SNP	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	missense	c.1633	p.L545V	0.986	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	tier1	-	-	37	0	0.00	58	10	14.71
TDRD1	0	genome.wustl.edu	37	10	115981169	115981169	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	115981169	115981169	A	G	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.2824	p.I942V	0.287	pfam_Tudor	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	tier1	-	-	28	0	0.00	43	18	29.51
TECPR2	0	genome.wustl.edu	37	14	102963419	102963419	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	102963419	102963419	A	G	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.3893	p.E1298G	1.000	pfam_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	tier1	-	-	80	0	0.00	49	45	47.87
TENM4	0	genome.wustl.edu	37	11	78381002	78381002	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	11	78381002	78381002	T	C	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.6388	p.I2130V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256	tier1	-	-	37	0	0.00	13	12	48.00
TFDP1	0	genome.wustl.edu	37	13	114294708	114294708	+	RNA	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	114294708	114294708	G	C	SNP	TFDP1	ENST00000494812	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	TFDP1	HGNC	ENSG00000198176	tier1	-	-	11	0	0.00	4	6	60.00
TGDS	0	genome.wustl.edu	37	13	95248249	95248249	+	RNA	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	95248249	95248249	G	T	SNP	TGDS	ENST00000498294	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	TGDS	HGNC	ENSG00000088451	tier1	-	-	109	0	0.00	62	4	5.97
TGM3	0	genome.wustl.edu	37	20	2312957	2312957	+	Splice_Site	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	2312957	2312957	G	T	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	splice_site	c.1642+1	e10+1	1.000	-	-	-	no_errors	TGM3	HGNC	ENSG00000125780				17	0	0.00	32	3	8.57
THBS2	0	genome.wustl.edu	37	6	169637866	169637866	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	169637866	169637866	G	C	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.1154	p.S385C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	tier1	-	-	85	0	0.00	69	13	15.85
TMBIM4	0	genome.wustl.edu	37	12	66539653	66539653	+	Silent	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	66539653	66539653	T	C	SNP	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	silent	c.432	p.Q144	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957	tier1	-	-	53	0	0.00	83	28	24.78
TMEM97	0	genome.wustl.edu	37	17	26652649	26652649	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	26652649	26652649	A	G	SNP	TMEM97	ENST00000226230	human	ensembl	74_37	+1	known	missense	c.247	p.I83V	0.004	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084	tier1	-	-	61	0	0.00	75	9	10.71
TP53	0	genome.wustl.edu	37	17	7578239	7578239	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	7578239	7578239	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.610	p.E204*	0.045	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	65	0	0.00	20	41	67.21
TPTE2	0	genome.wustl.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	13	20025336	20025336	A	G	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	silent	c.771	p.H257	0.040	pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				58	0	0.00	47	4	7.84
TTC16	0	genome.wustl.edu	37	9	130493299	130493299	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	130493299	130493299	C	G	SNP	TTC16	ENST00000373289	human	ensembl	74_37	+1	known	missense	c.2237	p.S746C	0.019	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094				95	0	0.00	55	3	5.17
TTC40	0	genome.wustl.edu	37	10	134751079	134751079	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	134751079	134751079	A	G	SNP	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	missense	c.637	p.Y213H	0.202	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	34	0	0.00	36	8	18.18
TTN	0	genome.wustl.edu	37	2	179648828	179648828	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	179648828	179648828	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.2744	p.R915H	0.001	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	38	0	0.00	45	11	19.64
TTYH2	0	genome.wustl.edu	37	17	72227120	72227120	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	72227120	72227120	C	G	SNP	TTYH2	ENST00000269346	human	ensembl	74_37	+1	known	missense	c.396	p.F132L	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540				43	0	0.00	38	3	7.32
TUBBP5	0	genome.wustl.edu	37	9	141069223	141069223	+	RNA	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	141069223	141069223	T	C	SNP	TUBBP5	ENST00000503395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	-	-	42	0	0.00	24	5	17.24
UBAP2	0	genome.wustl.edu	37	9	33941666	33941666	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	9	33941666	33941666	G	C	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	nonsense	c.1910	p.S637*	0.028	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	tier1	-	-	23	0	0.00	23	21	47.73
UBE2K	0	genome.wustl.edu	37	4	39776500	39776500	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	4	39776500	39776500	C	G	SNP	UBE2K	ENST00000261427	human	ensembl	74_37	+1	known	missense	c.346	p.L116V	0.828	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_UBA/Ts_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2K	HGNC	ENSG00000078140	tier1	-	-	16	0	0.00	3	13	81.25
UBTD1	0	genome.wustl.edu	37	10	99330073	99330073	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	99330073	99330073	G	T	SNP	UBTD1	ENST00000370664	human	ensembl	74_37	+1	known	missense	c.477	p.K159N	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBTD1	HGNC	ENSG00000165886				64	0	0.00	53	3	5.36
UNG	0	genome.wustl.edu	37	12	109547654	109547654	+	Silent	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	109547654	109547654	G	A	SNP	UNG	ENST00000242576	human	ensembl	74_37	+1	known	silent	c.822	p.Q274	1.000	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse	-	no_errors	UNG	HGNC	ENSG00000076248	tier1	-	-	80	0	0.00	85	42	33.07
USP7	0	genome.wustl.edu	37	16	8997253	8997253	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	16	8997253	8997253	C	T	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.1711	p.A571T	0.981	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				26	0	0.00	35	2	5.41
VWF	0	genome.wustl.edu	37	12	6161849	6161849	+	Silent	SNP	G	G	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	12	6161849	6161849	G	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.2046	p.A682	0.984	pirsf_VWF,pfam_TIL_dom,superfamily_TIL_dom	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				61	0	0.00	59	5	7.81
WASH6P	0	genome.wustl.edu	37	X	155252248	155252248	+	RNA	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	X	155252248	155252248	C	T	SNP	WASH6P	ENST00000340131	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.567	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	tier1	-	-	30	0	0.00	25	6	19.35
WSCD1	0	genome.wustl.edu	37	17	5991412	5991412	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	17	5991412	5991412	C	T	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.530	p.A177V	0.832	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314	tier1	-	-	58	0	0.00	69	4	5.48
XDH	0	genome.wustl.edu	37	2	31571772	31571772	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	31571772	31571772	A	G	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.3044	p.L1015P	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				29	0	0.00	57	4	6.56
XPC	0	genome.wustl.edu	37	3	14219966	14219968	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	3	14219966	14219968	CCT	-	DEL	XPC	ENST00000285021	human	ensembl	74_37	-1	known	in_frame_del	c.103_101	p.E34in_frame_del	0.927:0.902:0.864	NULL	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	tier1			24	0	0.00	24	4	14.29
YEATS2-AS1	0	genome.wustl.edu	37	3	183525736	183525737	+	RNA	INS	-	-	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	3	183525736	183525737	-	T	INS	YEATS2-AS1	ENST00000425008	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	YEATS2-AS1	HGNC	ENSG00000233885	tier1			27	0	0.00	30	9	23.08
YLPM1	0	genome.wustl.edu	37	14	75276398	75276398	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	75276398	75276398	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.4837	p.V1613I	0.997	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				43	0	0.00	61	4	6.15
ZC3H7B	0	genome.wustl.edu	37	22	41739432	41739432	+	Silent	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	22	41739432	41739432	C	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	silent	c.1311	p.G437	0.525	NULL	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403				70	0	0.00	70	4	5.33
ZFYVE26	0	genome.wustl.edu	37	14	68236404	68236404	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	14	68236404	68236404	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.5528	p.C1843Y	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121	tier1	-	-	48	0	0.00	25	24	48.98
ZNF208	0	genome.wustl.edu	37	19	22154522	22154522	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	22154522	22154522	C	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.3314	p.R1105K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				43	0	0.00	71	4	5.33
ZNF223	0	genome.wustl.edu	37	19	44571272	44571272	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	44571272	44571272	G	C	SNP	ZNF223	ENST00000591793	human	ensembl	74_37	+1	known	missense	c.1621	p.E541Q	0.011	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF223	Uniprot_gn	ENSG00000267022	tier1	-	-	19	0	0.00	29	17	36.96
ZNF252P	0	genome.wustl.edu	37	8	146203408	146203408	+	RNA	SNP	C	C	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	8	146203408	146203408	C	A	SNP	ZNF252P	ENST00000426361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	ZNF252P	HGNC	ENSG00000196922	tier1	-	-	62	0	0.00	129	44	25.43
ZNF341	0	genome.wustl.edu	37	20	32376685	32376685	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	32376685	32376685	A	G	SNP	ZNF341	ENST00000483118	human	ensembl	74_37	+1	known	missense	c.1772	p.N591S	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061	tier1	-	-	32	0	0.00	44	23	34.33
ZNF385B	0	genome.wustl.edu	37	2	180306890	180306890	+	RNA	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	2	180306890	180306890	G	A	SNP	ZNF385B	ENST00000466398	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ZNF385B	HGNC	ENSG00000144331	tier1	-	-	31	0	0.00	52	37	41.11
ZNF446	0	genome.wustl.edu	37	19	58991834	58991834	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	58991834	58991834	T	A	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.1094	p.L365Q	0.001	NULL	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				58	0	0.00	76	4	5.00
ZNF518A	0	genome.wustl.edu	37	10	97920573	97920573	+	RNA	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	10	97920573	97920573	G	A	SNP	ZNF518A	ENST00000534948	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	tier1	-	-	21	0	0.00	27	12	30.00
ZNF568	0	genome.wustl.edu	37	19	37416130	37416130	+	Silent	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	37416130	37416130	C	T	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	silent	c.105	p.S35	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	tier1	-	-	57	0	0.00	66	40	37.38
ZNF729	0	genome.wustl.edu	37	19	22499217	22499217	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	22499217	22499217	G	C	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.2998	p.D1000H	0.008	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350	tier1	-	-	21	0	0.00	38	26	40.62
ZNF730	0	genome.wustl.edu	37	19	23328256	23328256	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	23328256	23328256	T	C	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	+1	known	missense	c.410	p.L137S	0.024	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF730	HGNC	ENSG00000183850	tier1	-	-	43	0	0.00	57	23	28.40
ZNF831	0	genome.wustl.edu	37	20	57766387	57766387	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	20	57766387	57766387	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.313	p.V105M	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	tier1	-	-	8	0	0.00	14	10	41.67
ZNF99	0	genome.wustl.edu	37	19	22941667	22941667	+	Silent	SNP	T	T	C			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	19	22941667	22941667	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	silent	c.771	p.K257	0.014	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	rs199672066	-	42	0	0.00	94	8	7.84
ZSCAN23	0	genome.wustl.edu	37	6	28402571	28402571	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A9FO-01A-11D-A387-09	TCGA-LN-A9FO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5368be89-2d00-4206-a8d3-b96639295db4	e1e94442-c85e-4d32-9f22-9a1c2bf12624	6	28402571	28402571	C	T	SNP	ZSCAN23	ENST00000289788	human	ensembl	74_37	-1	known	missense	c.841	p.E281K	0.655	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN23	HGNC	ENSG00000187987	tier1	-	-	50	0	0.00	36	32	47.06
