Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
DNAJC27	0	genome.wustl.edu	37	2	25174396	25174396	+	Missense_Mutation	SNP	A	A	G			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	2	25174396	25174396	A	G	SNP	DNAJC27	ENST00000264711	human	ensembl	74_37	-1	known	missense	c.556	p.C186R	1	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_DnaJ_domain,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_DnaJ_domain,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_Small_GTPase,prints_DnaJ_domain,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	92	0	0	94	27	22.31	182	0	0.00	170	54	24.11
SF3B1	0	genome.wustl.edu	37	2	198273163	198273163	+	Silent	SNP	G	G	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	2	198273163	198273163	G	A	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	silent	c.1047	p.S349	1	pfam_SF3b_su1	pfam_SF3b_su1,superfamily_ARM-type_fold	0	no_errors	0	0	0	86	0	0	36	28	43.75	253	0	0.00	129	75	36.76
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	298	0	0	208	142	40.57	122	0	0.00	80	44	35.48
STRIP2	0	genome.wustl.edu	37	7	129098231	129098231	+	Missense_Mutation	SNP	C	C	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	7	129098231	129098231	C	A	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	1	known	missense	c.1214	p.A405E	0.998	NULL	pfam_DUF3402,pfam_N1221	0	no_errors	0	0	0	46	0	0	24	17	41.46	126	0	0.00	64	36	35.64
C10orf90	0	genome.wustl.edu	37	10	128149995	128149995	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	10	128149995	128149995	G	A	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.1985	p.T662M	0	NULL	NULL	0	no_errors	rs375267781	G->A	0	90	0	0	51	38	42.7	148	1	0.67	66	45	40.54
RDH5	0	genome.wustl.edu	37	12	56115574	56115574	+	Missense_Mutation	SNP	A	A	G			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	12	56115574	56115574	A	G	SNP	RDH5	ENST00000257895	human	ensembl	74_37	1	known	missense	c.412	p.M138V	0.003	pfam_DH_sc/Rdtase_SDR,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	0	no_errors	0	0	0	141	0	0	69	45	39.47	90	0	0.00	56	23	29.11
ABCC4	0	genome.wustl.edu	37	13	95696021	95696021	+	Missense_Mutation	SNP	T	T	C			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	13	95696021	95696021	T	C	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.3650	p.K1217R	0.954	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	0	no_errors	0	0	0	54	0	0	39	21	35	176	0	0.00	94	74	44.05
CHD3	0	genome.wustl.edu	37	17	7798460	7798460	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	17	7798460	7798460	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	1	known	nonsense	c.1495	p.R499*	1	pfam_Znf_PHD-finger,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	0	no_errors	0	0	0	41	0	0	26	16	38.1	180	0	0.00	113	63	35.80
FOXN1	0	genome.wustl.edu	37	17	26851557	26851557	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	17	26851557	26851557	G	A	SNP	FOXN1	ENST00000226247	human	ensembl	74_37	1	known	missense	c.160	p.D54N	0.242	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	rs200888774	G->A	1,0	19	0	0	16	17	51.52	67	0	0.00	43	20	31.25
CLTC	0	genome.wustl.edu	37	17	57743887	57743887	+	Missense_Mutation	SNP	G	G	C			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	17	57743887	57743887	G	C	SNP	CLTC	ENST00000269122	human	ensembl	74_37	1	known	missense	c.1829	p.R610P	1	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	0	no_errors	0	0	0	34	0	0	43	14	24.56	292	2	0.68	166	53	23.98
MRPS7	0	genome.wustl.edu	37	17	73258007	73258007	+	Missense_Mutation	SNP	C	C	G			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	17	73258007	73258007	C	G	SNP	MRPS7	ENST00000245539	human	ensembl	74_37	1	known	missense	c.26	p.A9G	0	NULL	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	0	no_errors	0	0	0	180	0	0	91	46	33.58	56	0	0.00	18	12	40.00
OR1I1	0	genome.wustl.edu	37	19	15198335	15198335	+	Missense_Mutation	SNP	C	C	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	19	15198335	15198335	C	A	SNP	OR1I1	ENST00000209540	human	ensembl	74_37	1	known	missense	c.459	p.N153K	0	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	35	0	0	12	8	40	155	0	0.00	75	50	40.00
RPL18	0	genome.wustl.edu	37	19	49120073	49120073	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	19	49120073	49120073	C	T	SNP	RPL18	ENST00000549370	human	ensembl	74_37	-1	known	missense	c.199	p.D67N	1	NULL	NULL	0	no_errors	0	0	0	51	0	0	32	20	38.46	157	0	0.00	81	45	35.71
FLNA	0	genome.wustl.edu	37	X	153591113	153591114	+	Frame_Shift_Ins	INS	-	-	T			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	X	153591113	153591114	0	T	INS	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	frame_shift_ins	c.2320_2319	p.V773fs	1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	0	no_errors	0	0	0	88	0	0	62	18	22.5	77	0	0.00	41	15	26.79
SNORD3A	0	genome.wustl.edu	37	17	19091344	19091344	+	RNA	DEL	G	G	-			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	17	19091344	19091344	G	0	DEL	SNORD3A	ENST00000365494	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	253	0	0	227	26	10.28	89	0	0.00	98	7	6.67
PLXNB2	0	genome.wustl.edu	37	22	50722370	50722371	+	In_Frame_Ins	INS	-	-	CGG			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	-	-	-	CGG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	22	50722370	50722371	0	CGG	INS	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	in_frame_ins	c.2313_2312	p.772in_frame_insR	1.000:1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	0	no_errors	0	0	0	56	0	0	51	13	20.31	18	0	0.00	6	4	40.00
FOXD4L5	0	genome.wustl.edu	37	9	70177486	70177486	+	Silent	SNP	G	G	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	9	70177486	70177486	G	A	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	silent	c.498	p.F166	1	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	rs199726212	G->A	0	20	1	4.76	13	7	35	0	0	0.00	0	0	0.00
NDN	0	genome.wustl.edu	37	15	23932210	23932210	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	15	23932210	23932210	G	A	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.155	p.P52L	0	NULL	pfam_MAGE,pfscan_MAGE	0	no_errors	0	0	0	12	0	0	10	3	23.08	12	0	0.00	2	0	0.00
RUNX2	0	genome.wustl.edu	37	6	45390446	45390448	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	6	45390446	45390448	CAG	0	DEL	RUNX2	ENST00000352853	human	ensembl	74_37	1	known	in_frame_del	c.379_381	p.Q130in_frame_del	0.995:0.993:0.990	NULL	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	0	no_errors	0	0	0	77	0	0	50	5	9.09	7	0	0.00	2	0	0.00
ENSG00000258646	0	genome.wustl.edu	37	14	75471420	75471422	+	RNA	DEL	TTG	TTG	-			TCGA-3G-AB0Q-01A-11D-A423-09	TCGA-3G-AB0Q-11A-21D-A426-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ef4fa790-c453-4568-bb03-76ae3d5931d4	126fc753-1f18-4013-8285-ed49ed76bc87	14	75471420	75471422	TTG	0	DEL	ENSG00000258646	ENST00000554430	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.000	0	0	0	no_errors	0	0	0	10	0	0	4	2	33.33	13	0	0.00	7	0	0.00
