Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-ND5	0	genome.wustl.edu	37	MT	13121	13121	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	MT	13121	13121	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.785	p.R262H	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	47	0	0	6	3	33.33	1	0	0.00	0	3	100.00
ZMYM3	0	genome.wustl.edu	37	X	70468142	70468142	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	X	70468142	70468142	G	T	SNP	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	nonsense	c.1851	p.C617*	1	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	0	no_errors	0	0	0	26	0	0	8	10	55.56	103	0	0.00	62	39	38.24
FRAS1	0	genome.wustl.edu	37	4	79188536	79188536	+	Missense_Mutation	SNP	G	G	C			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	4	79188536	79188536	G	C	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	1	known	missense	c.931	p.G311R	1	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	0	no_errors	0	0	0	65	0	0	53	14	20.9	163	0	0.00	117	34	22.52
ACN9	0	genome.wustl.edu	37	7	96747041	96747041	+	Silent	SNP	G	G	A			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	7	96747041	96747041	G	A	SNP	ACN9	ENST00000432641	human	ensembl	74_37	1	known	silent	c.6	p.P2	0.082	NULL	pfam_Complex1_LYR	0	no_errors	rs566561181	G->A	0.9998,0.0001997	28	0	0	33	10	23.26	130	0	0.00	118	39	24.84
STAU2	0	genome.wustl.edu	37	8	74333642	74333642	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	8	74333642	74333642	C	T	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	missense	c.1678	p.A560T	0.978	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	0	no_errors	0	0	0	45	0	0	52	13	20	209	1	0.48	193	46	19.25
ANK3	0	genome.wustl.edu	37	10	61932688	61932688	+	Silent	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	10	61932688	61932688	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.2352	p.Q784	1	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	0	no_errors	0	0	0	50	0	0	46	8	14.81	185	0	0.00	172	24	12.24
HNRNPKP3	0	genome.wustl.edu	37	11	43283299	43283299	+	RNA	SNP	A	A	G			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	11	43283299	43283299	A	G	SNP	HNRNPKP3	ENST00000511537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	0	0	0	no_errors	0	0	0	17	0	0	13	6	31.58	171	0	0.00	180	28	13.40
ALG9	0	genome.wustl.edu	37	11	111708233	111708233	+	Missense_Mutation	SNP	T	T	C			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	11	111708233	111708233	T	C	SNP	ALG9	ENST00000531154	human	ensembl	74_37	-1	known	missense	c.917	p.K306R	1	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	0	no_errors	0	0	0	60	1	1.64	75	25	25	190	0	0.00	163	53	24.54
XPO4	0	genome.wustl.edu	37	13	21374437	21374437	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	13	21374437	21374437	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.2005	p.G669R	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	0	no_errors	0	0	0	44	0	0	35	13	27.08	241	0	0.00	181	38	17.35
TIMM9	0	genome.wustl.edu	37	14	58893879	58893879	+	RNA	SNP	A	A	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	14	58893879	58893879	A	T	SNP	TIMM9	ENST00000216463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	59	1	1.67	77	28	26.67	163	0	0.00	140	44	23.78
PPP4R4	0	genome.wustl.edu	37	14	94741717	94741717	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	14	94741717	94741717	C	T	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	1	known	missense	c.2456	p.S819L	0.95	NULL	superfamily_ARM-type_fold,pfscan_HEAT_type_2	0	no_errors	rs267604108	C->T	0	87	0	0	67	22	24.72	228	0	0.00	229	64	21.69
TP53	0	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	A			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	17	7577538	7577538	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.743	p.R248L	1	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	0	no_errors	0	0	0	24	0	0	30	11	26.83	145	0	0.00	113	34	23.13
RBBP6	0	genome.wustl.edu	37	16	24581490	24581496	+	Frame_Shift_Del	DEL	TTGAGTC	TTGAGTC	-			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	TTGAGTC	TTGAGTC	TTGAGTC	-	TTGAGTC	TTGAGTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	16	24581490	24581496	TTGAGTC	0	DEL	RBBP6	ENST00000319715	human	ensembl	74_37	1	known	frame_shift_del	c.3479_3485	p.E1161fs	1.000:0.999:1.000:0.985:0.084:0.080:0.053	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	0	no_errors	0	0	0	44	0	0	24	4	14.29	202	0	0.00	166	7	4.05
MT-CO1	0	genome.wustl.edu	37	MT	6872	6872	+	Missense_Mutation	SNP	A	A	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	MT	6872	6872	A	T	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	missense	c.969	p.W323C	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	0	0	0	78	0	0	10	6	37.5	6	0	0.00	2	0	0.00
ENSG00000269888	0	genome.wustl.edu	37	3	161146937	161146937	+	RNA	SNP	G	G	A			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	3	161146937	161146937	G	A	SNP	ENSG00000269888	ENST00000602890	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	29	0	0	29	4	12.12	0	0	0.00	0	0	0.00
TMEM229A	0	genome.wustl.edu	37	7	123672482	123672482	+	Silent	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	7	123672482	123672482	C	T	SNP	TMEM229A	ENST00000455783	human	ensembl	74_37	-1	known	silent	c.576	p.Q192	0.051	NULL	NULL	0	no_errors	0	0	0	26	0	0	20	4	16.67	5	0	0.00	3	0	0.00
NPIPA2	0	genome.wustl.edu	37	16	14859247	14859247	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	16	14859247	14859247	C	T	SNP	NPIPA2	ENST00000529166	human	ensembl	74_37	1	novel	missense	c.1087	p.R363W	0.065	NULL	NULL	0	no_errors	0	0	0	42	1	2.33	62	6	8.82	0	0	0.00	0	0	0.00
FAM230A	0	genome.wustl.edu	37	22	20708961	20708961	+	Silent	SNP	C	C	T			TCGA-3G-AB14-01A-11D-A423-09	TCGA-3G-AB14-11A-22D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c737446-04f3-49eb-ada0-0282c2353364	4a15d726-09ea-450c-9137-a15721887d44	22	20708961	20708961	C	T	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	1	known	silent	c.693	p.N231	0.111	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	0	no_errors	rs12172491	C->T	0	24	0	0	17	6	26.09	8	0	0.00	9	0	0.00
