Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-RNR2	0	genome.wustl.edu	37	MT	2866	2866	+	RNA	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	2866	2866	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	145	0	0	144	41	22.16	10	0	0.00	0	2	100.00
MT-RNR2	0	genome.wustl.edu	37	MT	2978	2978	+	RNA	SNP	T	T	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	2978	2978	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	65	0	0	70	13	15.66	8	0	0.00	1	2	66.67
CXorf22	0	genome.wustl.edu	37	X	35959479	35959479	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	X	35959479	35959479	A	G	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	1	known	missense	c.481	p.K161E	0.812	superfamily_PapD-like	superfamily_PapD-like	0	no_errors	0	0	0	83	0	0	96	8	7.69	118	0	0.00	153	20	11.43
BCOR	0	genome.wustl.edu	37	X	39933500	39933500	+	Missense_Mutation	SNP	A	A	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	X	39933500	39933500	A	T	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	missense	c.1099	p.S367T	0.993	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	24	0	0	38	5	11.63	98	0	0.00	130	18	12.08
EPS15	0	genome.wustl.edu	37	1	51929355	51929355	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	1	51929355	51929355	A	G	SNP	EPS15	ENST00000371733	human	ensembl	74_37	-1	known	missense	c.491	p.I164T	1	smart_EPS15_homology,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology	smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	0	no_errors	0	0	0	187	0	0	138	12	8	217	0	0.00	220	15	6.38
LMX1A	0	genome.wustl.edu	37	1	165218733	165218733	+	Silent	SNP	G	G	A			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	1	165218733	165218733	G	A	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	silent	c.408	p.V136	0.988	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	0	no_errors	0	0	0	43	0	0	38	4	9.52	54	0	0.00	86	19	18.10
DSTYK	0	genome.wustl.edu	37	1	205180465	205180465	+	Missense_Mutation	SNP	G	G	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	1	205180465	205180465	G	C	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.199	p.L67V	0.937	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	83	0	0	95	11	10.38	75	0	0.00	111	7	5.93
FSIP2	0	genome.wustl.edu	37	2	186665769	186665769	+	Silent	SNP	G	G	A			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	2	186665769	186665769	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	1	known	silent	c.12003	p.L4001	0	NULL	NULL	0	no_errors	0	0	0	48	0	0	34	5	12.82	181	0	0.00	192	22	10.28
FAM208A	0	genome.wustl.edu	37	3	56657536	56657536	+	Silent	SNP	T	T	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	3	56657536	56657536	T	C	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	silent	c.4359	p.E1453	1	NULL	pfam_DUF3715	0	no_errors	0	0	0	31	0	0	37	6	13.64	218	0	0.00	234	24	9.30
CMSS1	0	genome.wustl.edu	37	3	99886630	99886630	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	3	99886630	99886630	C	T	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	1	known	missense	c.464	p.S155L	0.996	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	0	no_errors	0	0	0	70	0	0	60	10	14.29	173	0	0.00	157	12	7.06
TDO2	0	genome.wustl.edu	37	4	156830136	156830136	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	4	156830136	156830136	C	T	SNP	TDO2	ENST00000536354	human	ensembl	74_37	1	known	missense	c.401	p.T134M	1	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	0	no_errors	0	0	0	79	0	0	62	6	8.82	135	0	0.00	112	8	6.61
ACSL1	0	genome.wustl.edu	37	4	185678349	185678349	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	4	185678349	185678349	G	A	SNP	ACSL1	ENST00000281455	human	ensembl	74_37	-1	known	missense	c.2027	p.A676V	0.998	NULL	pfam_AMP-dep_Synth/Lig	0	no_errors	0	0	0	52	0	0	38	5	11.36	161	0	0.00	160	7	4.19
KCNQ5	0	genome.wustl.edu	37	6	73879514	73879514	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	6	73879514	73879514	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	1	known	missense	c.1544	p.C515Y	1	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	0	no_errors	0	0	0	95	0	0	115	14	10.85	234	0	0.00	196	23	10.50
LEP	0	genome.wustl.edu	37	7	127892159	127892159	+	Missense_Mutation	SNP	G	G	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	7	127892159	127892159	G	T	SNP	LEP	ENST00000308868	human	ensembl	74_37	1	known	missense	c.88	p.D30Y	1	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	0	no_errors	0	0	0	65	0	0	62	5	7.46	184	0	0.00	287	13	4.32
NCOA2	0	genome.wustl.edu	37	8	71068207	71068207	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	8	71068207	71068207	T	G	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.2393	p.Q798P	1	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	0	no_errors	0	0	0	35	0	0	52	12	18.75	225	0	0.00	238	50	17.30
GPRIN2	0	genome.wustl.edu	37	10	46999615	46999615	+	Silent	SNP	C	C	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	10	46999615	46999615	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	1	known	silent	c.735	p.G245	0.023	NULL	NULL	0	no_errors	0	0	0	36	0	0	28	5	15.15	55	0	0.00	63	3	4.55
DCLRE1A	0	genome.wustl.edu	37	10	115609247	115609247	+	Silent	SNP	A	A	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	10	115609247	115609247	A	C	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	silent	c.1617	p.P539	0.004	NULL	pfam_DRMBL	0	no_errors	0	0	0	71	0	0	49	7	12.5	202	0	0.00	252	36	12.50
RAPGEF3	0	genome.wustl.edu	37	12	48144924	48144924	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	12	48144924	48144924	C	T	SNP	RAPGEF3	ENST00000389212	human	ensembl	74_37	-1	known	missense	c.578	p.R193K	0.008	NULL	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	0	no_errors	0	0	0	42	0	0	48	4	7.69	48	0	0.00	58	9	13.43
RAB27A	0	genome.wustl.edu	37	15	55522664	55522664	+	Silent	SNP	C	C	A			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	15	55522664	55522664	C	A	SNP	RAB27A	ENST00000336787	human	ensembl	74_37	-1	known	silent	c.174	p.P58	0.038	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	58	0	0	34	8	19.05	110	0	0.00	122	20	14.08
TBC1D2B	0	genome.wustl.edu	37	15	78316874	78316874	+	Missense_Mutation	SNP	A	A	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	15	78316874	78316874	A	C	SNP	TBC1D2B	ENST00000300584	human	ensembl	74_37	-1	known	missense	c.1094	p.V365G	0.99	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	0	no_errors	0	0	0	18	0	0	20	4	16.67	98	0	0.00	111	6	5.13
RNF213	0	genome.wustl.edu	37	17	78320135	78320135	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	17	78320135	78320135	C	G	SNP	RNF213	ENST00000582970	human	ensembl	74_37	1	known	missense	c.8000	p.S2667C	0	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	0	no_errors	0	0	0	23	0	0	32	4	11.11	48	0	0.00	52	6	10.34
TUBB6	0	genome.wustl.edu	37	18	12308715	12308715	+	Silent	SNP	C	C	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	18	12308715	12308715	C	T	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	1	known	silent	c.87	p.G29	0.995	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	0	no_errors	rs376972319	C->T	0	102	0	0	76	10	11.63	74	0	0.00	67	4	5.63
NCAN	0	genome.wustl.edu	37	19	19335003	19335003	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	19	19335003	19335003	C	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	1	known	missense	c.649	p.R217W	0.87	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	0	no_errors	0	0	0	38	0	0	43	7	13.73	100	0	0.00	114	13	10.16
FASTKD5	0	genome.wustl.edu	37	20	3128199	3128199	+	Silent	SNP	A	A	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	20	3128199	3128199	A	C	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	silent	c.1518	p.T506	0.076	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	0	no_errors	0	0	0	20	0	0	38	5	11.63	262	0	0.00	311	35	10.09
LDHC	0	genome.wustl.edu	37	11	18451288	18451288	+	Frame_Shift_Del	DEL	C	C	-			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	11	18451288	18451288	C	0	DEL	LDHC	ENST00000280704	human	ensembl	74_37	1	known	frame_shift_del	c.249	p.Y83fs	0.057	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	0	no_errors	0	0	0	87	0	0	63	7	10	213	0	0.00	209	23	9.91
MT-RNR2	0	genome.wustl.edu	37	MT	2487	2487	+	RNA	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	2487	2487	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	388	1	0.26	459	35	7.07	10	0	0.00	2	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2648	2648	+	RNA	SNP	T	T	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	2648	2648	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	680	1	0.15	759	143	15.82	5	0	0.00	2	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2833	2833	+	RNA	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	2833	2833	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	rs3928312	A->G	0	179	0	0	171	65	27.54	9	0	0.00	1	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	3209	3209	+	RNA	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	3209	3209	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	15	0	0	14	7	33.33	5	0	0.00	0	0	0.00
MT-CO2	0	genome.wustl.edu	37	MT	8157	8157	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	8157	8157	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	1	known	missense	c.572	p.V191A	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	0	no_errors	0	0	0	58	0	0	48	7	12.28	3	0	0.00	2	0	0.00
MT-ND6	0	genome.wustl.edu	37	MT	14587	14587	+	Silent	SNP	A	A	C			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	14587	14587	A	C	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	silent	c.87	p.G29	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	0	no_errors	0	0	0	322	0	0	339	104	23.48	2	0	0.00	0	0	0.00
MT-ND6	0	genome.wustl.edu	37	MT	14641	14641	+	Silent	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	MT	14641	14641	A	G	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	silent	c.33	p.G11	NULL	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	0	no_errors	0	0	0	380	0	0	389	182	31.27	3	0	0.00	1	0	0.00
CCDC180	0	genome.wustl.edu	37	9	100092960	100092960	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	9	100092960	100092960	A	G	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	1	known	missense	c.2317	p.K773E	0	NULL	NULL	0	no_errors	0	0	0	34	0	0	49	4	7.55	18	0	0.00	9	0	0.00
IGDCC4	0	genome.wustl.edu	37	15	65678319	65678319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XM-A8RC-01A-11D-A423-09	TCGA-XM-A8RC-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63079442-ed32-400c-a2e9-a7004ac9c0d8	21abfc15-ddeb-49e4-b105-fc6d84224577	15	65678319	65678319	G	0	DEL	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	frame_shift_del	c.3030	p.S1011fs	0.001	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	0	no_errors	0	0	0	26	0	0	22	5	18.52	3	0	0.00	9	0	0.00
