Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
TTN	0	genome.wustl.edu	37	2	179584492	179584492	+	Missense_Mutation	SNP	C	C	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	2	179584492	179584492	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.19995	p.E6665D	0.097	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	0	0	0	16	0	0	9	14	60.87	323	0	0.00	91	101	52.60
SCN5A	0	genome.wustl.edu	37	3	38622694	38622694	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	3	38622694	38622694	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.2956	p.R986W	0.262	pfam_Na_trans_assoc,prints_Na_channel_a5su	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	0	no_errors	rs561547165	G->A	0.9996,0.0003994	47	0	0	14	19	57.58	23	0	0.00	6	7	53.85
RHOA	0	genome.wustl.edu	37	3	49400049	49400049	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	3	49400049	49400049	T	G	SNP	RHOA	ENST00000454011	human	ensembl	74_37	-1	putative	missense	c.167	p.Q56P	1	smart_Small_GTPase_Rho	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	104	0	0	34	28	44.44	287	0	0.00	111	69	38.33
HIST1H3F	0	genome.wustl.edu	37	6	26250543	26250543	+	Silent	SNP	G	G	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	6	26250543	26250543	G	A	SNP	HIST1H3F	ENST00000446824	human	ensembl	74_37	-1	known	silent	c.291	p.C97	1	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	0	no_errors	0	0	0	110	0	0	37	39	51.32	73	0	0.00	15	11	42.31
NOTCH4	0	genome.wustl.edu	37	6	32185850	32185850	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	6	32185850	32185850	C	G	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.1546	p.E516Q	1	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	0	no_errors	0	0	0	56	0	0	20	11	35.48	116	0	0.00	25	23	47.92
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	312	0	0	271	204	42.86	142	1	0.69	52	40	43.48
NEFM	0	genome.wustl.edu	37	8	24774812	24774812	+	Missense_Mutation	SNP	G	G	T			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	8	24774812	24774812	G	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	1	known	missense	c.1444	p.V482F	0.001	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	0	no_errors	0	0	0	30	0	0	51	36	41.38	136	0	0.00	75	40	34.78
FER1L6	0	genome.wustl.edu	37	8	125107171	125107171	+	Silent	SNP	C	C	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	8	125107171	125107171	C	A	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	1	known	silent	c.4587	p.L1529	1	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	0	no_errors	0	0	0	53	0	0	23	22	48.89	191	0	0.00	49	56	53.33
HRAS	0	genome.wustl.edu	37	11	533877	533877	+	Missense_Mutation	SNP	C	C	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	11	533877	533877	C	A	SNP	HRAS	ENST00000311189	human	ensembl	74_37	-1	known	missense	c.179	p.G60V	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	40	0	0	12	20	60.61	219	0	0.00	54	67	55.37
TRPM5	0	genome.wustl.edu	37	11	2443403	2443403	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	11	2443403	2443403	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.266	p.R89H	0.999	NULL	superfamily_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	42	0	0	14	11	44	66	0	0.00	18	12	40.00
COLCA2	0	genome.wustl.edu	37	11	111179016	111179016	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	11	111179016	111179016	G	A	SNP	COLCA2	ENST00000398035	human	ensembl	74_37	1	known	missense	c.319	p.A107T	0.025	NULL	NULL	0	no_errors	0	0	0	22	0	0	15	9	37.5	102	0	0.00	31	18	36.00
RNF6	0	genome.wustl.edu	37	13	26789705	26789705	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	13	26789705	26789705	G	A	SNP	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	missense	c.314	p.S105L	0.992	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	0	no_errors	0	0	0	49	0	0	26	15	36.59	231	1	0.43	50	54	51.92
JPH3	0	genome.wustl.edu	37	16	87723875	87723875	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	16	87723875	87723875	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	1	known	missense	c.1909	p.R637W	1	pirsf_Junctophilin	pirsf_Junctophilin,pfam_MORN,smart_MORN	0	no_errors	0	0	0	74	0	0	36	30	45.45	81	0	0.00	24	11	31.43
WDR18	0	genome.wustl.edu	37	19	991253	991253	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	19	991253	991253	C	G	SNP	WDR18	ENST00000251289	human	ensembl	74_37	1	known	missense	c.833	p.S278C	1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	0	no_errors	0	0	0	22	0	0	13	11	45.83	50	0	0.00	4	5	55.56
PPP2R1A	0	genome.wustl.edu	37	19	52716021	52716021	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	19	52716021	52716021	C	G	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	1	known	missense	c.586	p.L196V	1	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	0	no_errors	0	0	0	86	0	0	32	40	55.56	233	0	0.00	61	64	51.20
KIAA0754	0	genome.wustl.edu	37	1	39878977	39878977	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	1	39878977	39878977	A	G	SNP	KIAA0754	ENST00000530275	human	ensembl	74_37	1	known	missense	c.2632	p.T878A	0	NULL	NULL	0	no_errors	rs783821	A->G	0	51	1	1.89	28	6	17.14	16	0	0.00	2	0	0.00
UNC93B1	0	genome.wustl.edu	37	11	67759316	67759316	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	11	67759316	67759316	C	T	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.1492	p.V498M	0.997	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	0	no_errors	rs4014596	C->T	0	28	0	0	37	4	9.76	0	0	0.00	0	0	0.00
HMGN2P46	0	genome.wustl.edu	37	15	45848140	45848140	+	RNA	SNP	G	G	A			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	15	45848140	45848140	G	A	SNP	HMGN2P46	ENST00000313559	human	ensembl	74_37	1	known	rna	NULL	NULL	0.996	0	0	0	no_errors	0	0	0	39	0	0	41	4	8.89	3	0	0.00	1	0	0.00
PLA2R1	0	genome.wustl.edu	37	2	160918876	160918878	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	2	160918876	160918878	CAG	0	DEL	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	in_frame_del	c.39_37	p.L13in_frame_del	0.922:0.939:0.961	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	0	no_errors	0	0	0	58	1	1.69	34	4	10.53	12	0	0.00	4	0	0.00
ENSG00000221523	0	genome.wustl.edu	37	4	185188532	185188533	+	RNA	INS	-	-	TG			TCGA-XM-A8RG-01A-11D-A423-09	TCGA-XM-A8RG-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f281927-08c2-4579-a8ef-630529c92327	3e29f8d1-3f76-4aba-9614-c0c92ad67840	4	185188532	185188533	0	TG	INS	ENSG00000221523	ENST00000408596	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.012	0	0	0	no_errors	0	0	0	31	0	0	19	2	9.52	0	0	0.00	0	0	0.00
