Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-RNR2	0	genome.wustl.edu	37	MT	2778	2778	+	RNA	SNP	T	T	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	2778	2778	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	350	1	0.28	124	238	65.75	0	0	0.00	0	3	100.00
MT-RNR2	0	genome.wustl.edu	37	MT	2833	2833	+	RNA	SNP	A	A	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	2833	2833	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	rs3928312	A->G	0	212	1	0.47	128	84	39.62	2	0	0.00	0	2	100.00
EIF1AX	0	genome.wustl.edu	37	X	20159748	20159748	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	X	20159748	20159748	T	C	SNP	EIF1AX	ENST00000379607	human	ensembl	74_37	-1	known	missense	c.11	p.N4S	1	superfamily_NA-bd_OB-fold	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	0	no_errors	0	0	0	31	0	0	40	7	14.89	49	0	0.00	24	4	14.29
ENSG00000224066	0	genome.wustl.edu	37	1	32670768	32670768	+	RNA	SNP	A	A	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	1	32670768	32670768	A	G	SNP	ENSG00000224066	ENST00000373604	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	34	0	0	44	8	15.38	71	0	0.00	40	8	16.67
NRAS	0	genome.wustl.edu	37	1	115258734	115258734	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	1	115258734	115258734	T	G	SNP	NRAS	ENST00000369535	human	ensembl	74_37	-1	known	missense	c.48	p.K16N	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	72	0	0	103	12	10.43	287	1	0.35	239	30	11.07
SLC29A1	0	genome.wustl.edu	37	6	44200586	44200586	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	6	44200586	44200586	C	G	SNP	SLC29A1	ENST00000313248	human	ensembl	74_37	1	known	missense	c.1339	p.R447G	0.699	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	0	no_errors	0	0	0	48	0	0	74	12	13.95	46	0	0.00	56	3	5.08
RNF146	0	genome.wustl.edu	37	6	127608562	127608562	+	Missense_Mutation	SNP	A	A	T			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	6	127608562	127608562	A	T	SNP	RNF146	ENST00000368314	human	ensembl	74_37	1	known	missense	c.804	p.E268D	1	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	0	no_errors	0	0	0	36	0	0	31	6	16.22	206	0	0.00	140	19	11.95
TNFRSF11B	0	genome.wustl.edu	37	8	119938903	119938903	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	8	119938903	119938903	G	A	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	missense	c.647	p.T216M	0.918	pirsf_TNFR_11B,superfamily_DEATH-like_dom	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	0	no_errors	0	0	0	51	0	0	75	8	9.64	293	0	0.00	216	28	11.43
GABBR2	0	genome.wustl.edu	37	9	101133807	101133807	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	9	101133807	101133807	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	missense	c.1709	p.A570V	1	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	0	no_errors	0	0	0	62	0	0	58	5	7.94	208	0	0.00	164	12	6.78
CD163L1	0	genome.wustl.edu	37	12	7548911	7548911	+	Silent	SNP	G	G	A			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	12	7548911	7548911	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	silent	c.1830	p.D610	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	0	no_errors	rs140225151	G->A	0	23	1	4.17	31	8	20.51	145	0	0.00	108	5	4.42
MT-RNR2	0	genome.wustl.edu	37	MT	2455	2455	+	RNA	SNP	T	T	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	2455	2455	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	381	1	0.26	191	137	41.64	14	0	0.00	2	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	3038	3038	+	RNA	SNP	T	T	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	3038	3038	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	54	0	0	50	4	7.41	5	0	0.00	4	0	0.00
MT-CO1	0	genome.wustl.edu	37	MT	6444	6444	+	Missense_Mutation	SNP	A	A	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	6444	6444	A	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	missense	c.541	p.T181P	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	0	0	0	22	0	0	3	6	66.67	3	0	0.00	4	0	0.00
MT-CO1	0	genome.wustl.edu	37	MT	7364	7364	+	Silent	SNP	A	A	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	7364	7364	A	G	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	silent	c.1461	p.E487	NULL	superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	rs376846215	A->G	0	110	0	0	80	11	12.09	6	0	0.00	0	0	0.00
MT-ATP6	0	genome.wustl.edu	37	MT	8577	8577	+	Silent	SNP	A	A	C			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	8577	8577	A	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	1	known	silent	c.51	p.L17	NULL	tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	0	no_errors	0	0	0	8	0	0	1	2	33.33	7	0	0.00	0	0	0.00
MT-ATP6	0	genome.wustl.edu	37	MT	8725	8725	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	MT	8725	8725	A	G	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	1	known	missense	c.199	p.T67A	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	0	no_errors	0	0	0	17	0	0	6	2	25	9	0	0.00	1	0	0.00
KRTAP4-11	0	genome.wustl.edu	37	17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-AAZ1-01A-11D-A423-09	TCGA-XM-AAZ1-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6d3d8395-059b-4af7-a1cc-7b79c3030a56	439f8e89-3586-4a4f-bb80-f161de88804b	17	39274432	39274432	C	T	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	missense	c.136	p.V46M	0	pfam_Keratin-assoc	pfam_Keratin-assoc	0	no_errors	0	0	0	115	0	0	132	10	7.04	2	0	0.00	2	0	0.00
