Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CAPN6	0	genome.wustl.edu	37	X	110494930	110494930	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	X	110494930	110494930	C	T	SNP	CAPN6	ENST00000324068	human	ensembl	74_37	-1	known	missense	c.740	p.G247D	1	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	0	no_errors	0	0	0	25	0	0	4	21	84	70	0	0.00	15	56	78.87
HRNR	0	genome.wustl.edu	37	1	152189038	152189038	+	Silent	SNP	A	A	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	1	152189038	152189038	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.5067	p.Y1689	0	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	0	no_errors	rs145118416	A->G	0	34	0	0	39	12	23.53	32	0	0.00	21	2	8.70
MIR9-1	0	genome.wustl.edu	37	1	156390207	156390207	+	RNA	SNP	T	T	C			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	1	156390207	156390207	T	C	SNP	MIR9-1	ENST00000385198	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	21	0	0	9	7	43.75	108	0	0.00	36	31	46.27
ACTR2	0	genome.wustl.edu	37	2	65495807	65495807	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	2	65495807	65495807	G	A	SNP	ACTR2	ENST00000377982	human	ensembl	74_37	1	known	missense	c.1139	p.R380Q	1	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	0	no_errors	0	0	0	137	0	0	89	70	44.03	103	0	0.00	53	49	48.04
TTN	0	genome.wustl.edu	37	2	179437644	179437644	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	2	179437644	179437644	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.65511	p.E21837D	1	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	0	0	0	32	0	0	13	24	64.86	203	0	0.00	104	83	44.39
MECOM	0	genome.wustl.edu	37	3	169099264	169099264	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	3	169099264	169099264	A	G	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	missense	c.86	p.M29T	0.998	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	0	no_errors	0	0	0	82	0	0	26	27	50.94	189	0	0.00	143	78	35.14
KIF13A	0	genome.wustl.edu	37	6	17764739	17764739	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	6	17764739	17764739	C	A	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	missense	c.5020	p.A1674S	1	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	0	no_errors	0	0	0	60	0	0	41	22	34.92	188	1	0.53	124	80	39.22
BVES	0	genome.wustl.edu	37	6	105563600	105563600	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	6	105563600	105563600	G	A	SNP	BVES	ENST00000314641	human	ensembl	74_37	-1	known	missense	c.919	p.H307Y	0.998	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	0	no_errors	0	0	0	72	0	0	32	23	41.82	143	0	0.00	110	66	37.50
LINC00957	0	genome.wustl.edu	37	7	44080550	44080550	+	RNA	SNP	C	C	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	7	44080550	44080550	C	A	SNP	LINC00957	ENST00000416824	human	ensembl	74_37	1	known	rna	NULL	NULL	0.01	0	0	0	no_errors	0	0	0	71	1	1.39	52	7	11.86	18	0	0.00	17	2	10.53
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	293	0	0	182	130	41.53	102	0	0.00	70	67	48.91
AHCYL2	0	genome.wustl.edu	37	7	129049331	129049331	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	7	129049331	129049331	G	A	SNP	AHCYL2	ENST00000325006	human	ensembl	74_37	1	known	missense	c.1310	p.R437Q	1	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	0	no_errors	0	0	0	77	0	0	62	34	35.42	266	0	0.00	204	119	36.73
NOL6	0	genome.wustl.edu	37	9	33472349	33472349	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	9	33472349	33472349	C	T	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	0.003	NULL	pfam_Nrap	0	no_errors	rs369599517	C->T	0	28	0	0	13	15	53.57	167	1	0.58	98	55	35.95
CNTRL	0	genome.wustl.edu	37	9	123906272	123906272	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	9	123906272	123906272	A	T	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	1	known	missense	c.2963	p.K988M	1	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	0	no_errors	0	0	0	53	0	0	38	16	29.63	211	0	0.00	176	87	33.08
LRSAM1	0	genome.wustl.edu	37	9	130236179	130236179	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	9	130236179	130236179	A	G	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	1	known	missense	c.719	p.D240G	0.008	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	0	no_errors	0	0	0	32	0	0	17	11	39.29	148	0	0.00	67	47	41.23
SURF4	0	genome.wustl.edu	37	9	136230397	136230397	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	9	136230397	136230397	G	A	SNP	SURF4	ENST00000371989	human	ensembl	74_37	-1	known	missense	c.782	p.S261F	1	pfam_Surf4	pfam_Surf4	0	no_errors	0	0	0	40	0	0	39	17	30.36	207	0	0.00	113	69	37.91
HRAS	0	genome.wustl.edu	37	11	533544	533544	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	11	533544	533544	A	G	SNP	HRAS	ENST00000311189	human	ensembl	74_37	-1	known	missense	c.359	p.L120P	1	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	54	0	0	37	28	43.08	193	0	0.00	61	49	44.55
IGF2-AS	0	genome.wustl.edu	37	11	2167564	2167564	+	RNA	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	11	2167564	2167564	G	A	SNP	IGF2-AS	ENST00000381361	human	ensembl	74_37	1	known	rna	NULL	NULL	0.001	0	0	0	no_errors	rs377188989	G->A	0.9996,0.0003994	47	0	0	35	13	27.08	214	1	0.47	94	57	37.25
KCNMB4	0	genome.wustl.edu	37	12	70760622	70760622	+	Silent	SNP	C	C	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	12	70760622	70760622	C	G	SNP	KCNMB4	ENST00000258111	human	ensembl	74_37	1	known	silent	c.108	p.G36	1	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu	0	no_errors	0	0	0	31	0	0	23	19	45.24	29	0	0.00	18	14	43.75
UTP20	0	genome.wustl.edu	37	12	101776972	101776972	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	12	101776972	101776972	G	A	SNP	UTP20	ENST00000261637	human	ensembl	74_37	1	known	missense	c.7810	p.E2604K	0.052	NULL	pfam_DRIM,superfamily_ARM-type_fold	0	no_errors	0	0	0	23	0	0	21	14	40	70	0	0.00	48	39	44.83
CHGA	0	genome.wustl.edu	37	14	93397798	93397798	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	14	93397798	93397798	G	T	SNP	CHGA	ENST00000216492	human	ensembl	74_37	1	known	missense	c.559	p.A187S	0.07	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	0	no_errors	0	0	0	39	0	0	28	19	40.43	101	0	0.00	56	34	37.36
DNM1P47	0	genome.wustl.edu	37	15	102299928	102299928	+	RNA	SNP	A	A	C			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	15	102299928	102299928	A	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.996	0	0	0	no_errors	0	0	0	65	0	0	81	11	11.96	9	0	0.00	14	3	17.65
DNM1P47	0	genome.wustl.edu	37	15	102299929	102299929	+	RNA	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	15	102299929	102299929	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	65	0	0	81	11	11.96	9	0	0.00	14	3	17.65
LIG3	0	genome.wustl.edu	37	17	33319039	33319039	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	17	33319039	33319039	C	T	SNP	LIG3	ENST00000378526	human	ensembl	74_37	1	known	missense	c.1271	p.S424L	0.934	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	0	no_errors	0	0	0	34	0	0	23	13	36.11	139	0	0.00	83	44	34.65
MUC16	0	genome.wustl.edu	37	19	9005592	9005592	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	19	9005592	9005592	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.39814	p.Y13272H	0.959	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	0	no_errors	0	0	0	60	0	0	22	18	45	33	0	0.00	26	11	29.73
CLPTM1	0	genome.wustl.edu	37	19	45495976	45495976	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	19	45495976	45495976	G	A	SNP	CLPTM1	ENST00000337392	human	ensembl	74_37	1	known	missense	c.1831	p.V611M	0.332	NULL	pfam_CLPTM1	0	no_errors	rs199735762	G->A	0.9998,0.0001997	38	0	0	24	14	36.84	154	0	0.00	79	37	31.62
FAM83D	0	genome.wustl.edu	37	20	37576538	37576538	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	20	37576538	37576538	T	C	SNP	FAM83D	ENST00000217429	human	ensembl	74_37	1	known	missense	c.761	p.I254T	1	pfam_DUF1669	pfam_DUF1669	0	no_errors	0	0	0	102	0	0	61	46	42.99	193	0	0.00	123	81	39.71
ZNF462	0	genome.wustl.edu	37	9	109690685	109690685	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	9	109690685	109690685	G	0	DEL	ZNF462	ENST00000457913	human	ensembl	74_37	1	known	frame_shift_del	c.4492	p.V1498fs	1	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	24	0	0	26	17	39.53	111	0	0.00	69	46	40.00
ENSG00000169203	0	genome.wustl.edu	37	16	29496768	29496768	+	Silent	SNP	G	G	C			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	16	29496768	29496768	G	C	SNP	ENSG00000169203	ENST00000354563	human	ensembl	74_37	-1	known	silent	c.507	p.P169	0.031	NULL	NULL	0	no_errors	0	0	0	17	1	5.56	18	8	30.77	0	0	0.00	0	0	0.00
ANKRD30BL	0	genome.wustl.edu	37	2	133015515	133015516	+	RNA	INS	-	-	GGCG			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	2	133015515	133015516	0	GGCG	INS	ANKRD30BL	ENST00000470729	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021:0.015	0	0	0	no_errors	rs372477900	C->CGGCG	0	44	1	2.22	47	13	21.67	2	0	0.00	0	0	0.00
ENSG00000221244	0	genome.wustl.edu	37	5	1004308	1004309	+	RNA	INS	-	-	GG			TCGA-XU-A92Q-01A-11D-A423-09	TCGA-XU-A92Q-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	268c3e39-3acb-45d8-9c61-c13c46d1e906	aa5d7f36-ebc8-4ea0-80f6-5b82c96aa61f	5	1004308	1004309	0	GG	INS	ENSG00000221244	ENST00000408317	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.020:0.028	0	0	0	no_errors	0	0	0	31	1	3.12	25	5	16.67	10	0	0.00	4	0	0.00
