Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
GPR112	0	genome.wustl.edu	37	X	135428327	135428327	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	X	135428327	135428327	G	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	1	known	missense	c.2462	p.G821D	0.006	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	0	no_errors	0	0	0	36	0	0	26	12	31.58	252	0	0.00	203	109	34.94
MST1L	0	genome.wustl.edu	37	1	17084313	17084313	+	RNA	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	1	17084313	17084313	C	T	SNP	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	253	0	0	201	18	8.22	379	1	0.26	446	34	7.08
OPRD1	0	genome.wustl.edu	37	1	29189517	29189517	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	1	29189517	29189517	G	A	SNP	OPRD1	ENST00000234961	human	ensembl	74_37	1	known	missense	c.841	p.V281I	1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt	0	no_errors	0	0	0	61	0	0	20	8	28.57	86	0	0.00	54	31	36.05
ZBED6	0	genome.wustl.edu	37	1	203768760	203768760	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	1	203768760	203768760	G	A	SNP	ZBED6	ENST00000550078	human	ensembl	74_37	1	known	missense	c.2110	p.V704M	1	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	0	no_errors	0	0	0	29	1	3.33	22	13	37.14	191	0	0.00	168	77	31.43
CCDC142	0	genome.wustl.edu	37	2	74708427	74708427	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	74708427	74708427	A	C	SNP	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	missense	c.1181	p.L394R	0.116	NULL	NULL	0	no_errors	0	0	0	30	0	0	12	12	50	115	1	0.86	94	26	21.67
FIGN	0	genome.wustl.edu	37	2	164466135	164466135	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	164466135	164466135	A	T	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.2207	p.I736N	1	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	69	0	0	50	22	30.14	184	0	0.00	127	54	29.83
HJURP	0	genome.wustl.edu	37	2	234749861	234749861	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	234749861	234749861	G	A	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.1565	p.S522L	0	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	0	no_errors	0	0	0	71	0	0	33	17	34	246	0	0.00	159	76	32.20
HJURP	0	genome.wustl.edu	37	2	234750245	234750245	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	234750245	234750245	G	C	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.1181	p.A394G	0	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	0	no_errors	0	0	0	63	0	0	30	11	26.83	247	0	0.00	201	101	33.33
HJURP	0	genome.wustl.edu	37	2	234750577	234750577	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	234750577	234750577	G	C	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.849	p.I283M	1	pfam_HJURP	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	0	no_errors	0	0	0	45	0	0	18	12	40	220	0	0.00	133	60	31.09
HJURP	0	genome.wustl.edu	37	2	234750681	234750681	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	234750681	234750681	G	A	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.745	p.P249S	0	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	0	no_errors	0	0	0	44	0	0	27	6	18.18	257	0	0.00	191	72	27.38
HJURP	0	genome.wustl.edu	37	2	234750835	234750835	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	234750835	234750835	G	C	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.591	p.I197M	0.001	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	0	no_errors	0	0	0	19	0	0	9	6	40	213	0	0.00	182	59	24.38
PPARGC1A	0	genome.wustl.edu	37	4	23814740	23814740	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	4	23814740	23814740	T	C	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.1802	p.Y601C	1	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	0	0	0	54	0	0	28	26	48.15	200	0	0.00	115	54	31.95
ZNF192P1	0	genome.wustl.edu	37	6	28134312	28134312	+	RNA	SNP	C	C	G			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	6	28134312	28134312	C	G	SNP	ZNF192P1	ENST00000440790	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	41	0	0	22	18	45	230	0	0.00	197	86	30.39
HLA-DMA	0	genome.wustl.edu	37	6	32920785	32920785	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	6	32920785	32920785	G	A	SNP	HLA-DMA	ENST00000374843	human	ensembl	74_37	-1	known	missense	c.29	p.A10V	0.043	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	0	no_errors	0	0	0	58	0	0	36	18	33.33	181	0	0.00	132	73	35.44
RFX6	0	genome.wustl.edu	37	6	117246707	117246707	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	6	117246707	117246707	G	C	SNP	RFX6	ENST00000332958	human	ensembl	74_37	1	known	missense	c.1770	p.K590N	1	NULL	pfam_DNA-bd_RFX	0	no_errors	0	0	0	34	0	0	17	3	15	154	0	0.00	113	42	27.10
UTRN	0	genome.wustl.edu	37	6	144744742	144744742	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	6	144744742	144744742	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	1	known	nonsense	c.292	p.Q98*	1	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	0	no_errors	0	0	0	46	0	0	48	5	9.43	282	0	0.00	262	15	5.42
MPLKIP	0	genome.wustl.edu	37	7	40173957	40173957	+	Silent	SNP	G	G	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	7	40173957	40173957	G	A	SNP	MPLKIP	ENST00000306984	human	ensembl	74_37	-1	known	silent	c.210	p.G70	0.98	NULL	NULL	0	no_errors	0	0	0	19	0	0	8	9	52.94	61	0	0.00	57	46	44.66
COBL	0	genome.wustl.edu	37	7	51287490	51287490	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	7	51287490	51287490	C	T	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.193	p.V65I	0.107	pfam_Cordon-bleu_ubiquitin_domain	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	0	no_errors	0	0	0	37	0	0	18	9	33.33	60	0	0.00	69	25	26.60
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	350	0	0	238	104	30.41	127	1	0.78	97	51	34.46
DGKI	0	genome.wustl.edu	37	7	137330273	137330273	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	7	137330273	137330273	C	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.749	p.R250H	1	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	rs148415050	C->T	0	59	0	0	33	13	28.26	139	0	0.00	104	59	36.20
NPR2	0	genome.wustl.edu	37	9	35808516	35808516	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	9	35808516	35808516	T	C	SNP	NPR2	ENST00000342694	human	ensembl	74_37	1	known	missense	c.2723	p.I908T	1	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	0	no_errors	rs369313283	T->C	0.9998,0.0001997	11	0	0	7	3	30	312	0	0.00	256	24	8.54
DMBT1	0	genome.wustl.edu	37	10	124390692	124390692	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	10	124390692	124390692	G	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	1	known	missense	c.5854	p.D1952Y	0.794	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	0	no_errors	0	0	0	49	1	2	40	21	34.43	177	0	0.00	151	59	28.10
PRR13	0	genome.wustl.edu	37	12	53837543	53837543	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	12	53837543	53837543	C	T	SNP	PRR13	ENST00000429243	human	ensembl	74_37	1	known	missense	c.388	p.H130Y	0.999	NULL	NULL	0	no_errors	0	0	0	27	0	0	19	4	17.39	101	0	0.00	56	35	38.46
ACACB	0	genome.wustl.edu	37	12	109637257	109637257	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	12	109637257	109637257	A	C	SNP	ACACB	ENST00000338432	human	ensembl	74_37	1	known	missense	c.2678	p.D893A	1	superfamily_Single_hybrid_motif	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	0	no_errors	0	0	0	37	0	0	16	8	33.33	171	0	0.00	142	57	28.64
SLITRK1	0	genome.wustl.edu	37	13	84454909	84454909	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	13	84454909	84454909	G	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.734	p.T245N	1	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	0	no_errors	0	0	0	81	0	0	61	16	20.78	195	0	0.00	156	29	15.68
ARHGEF40	0	genome.wustl.edu	37	14	21542584	21542584	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	14	21542584	21542584	A	G	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	1	known	missense	c.695	p.N232S	0.978	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	0	no_errors	0	0	0	39	0	0	19	7	26.92	79	0	0.00	76	36	32.14
N4BP1	0	genome.wustl.edu	37	16	48594885	48594885	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	16	48594885	48594885	T	C	SNP	N4BP1	ENST00000262384	human	ensembl	74_37	-1	known	missense	c.1669	p.N557D	0	NULL	pfam_RNase_Zc3h12	0	no_errors	0	0	0	40	0	0	25	14	35.9	339	0	0.00	236	119	33.52
ONECUT3	0	genome.wustl.edu	37	19	1754836	1754836	+	Nonsense_Mutation	SNP	C	C	A			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	19	1754836	1754836	C	A	SNP	ONECUT3	ENST00000382349	human	ensembl	74_37	1	known	nonsense	c.1175	p.S392*	1	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	0	no_errors	0	0	0	41	0	0	17	8	32	37	0	0.00	20	23	53.49
FCAR	0	genome.wustl.edu	37	19	55396876	55396876	+	Silent	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	19	55396876	55396876	C	T	SNP	FCAR	ENST00000355524	human	ensembl	74_37	1	known	silent	c.300	p.C100	0.011	smart_Ig_sub	smart_Ig_sub	0	no_errors	0	0	0	35	0	0	13	6	31.58	139	0	0.00	128	61	32.28
NLRP5	0	genome.wustl.edu	37	19	56539531	56539531	+	Silent	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	19	56539531	56539531	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	1	known	silent	c.1932	p.D644	0	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	0	no_errors	0	0	0	36	0	0	24	6	20	125	0	0.00	88	47	34.56
PMEPA1	0	genome.wustl.edu	37	20	56227302	56227302	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	20	56227302	56227302	C	T	SNP	PMEPA1	ENST00000341744	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	1	NULL	NULL	0	no_errors	0	0	0	32	0	0	20	6	23.08	17	0	0.00	16	4	20.00
CSF2RB	0	genome.wustl.edu	37	22	37334245	37334245	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	22	37334245	37334245	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	1	known	missense	c.2413	p.R805C	0.001	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	0	no_errors	rs544020050	C->T	0.9996,0.0003994	76	0	0	52	10	16.13	146	0	0.00	183	13	6.63
C11orf45	0	genome.wustl.edu	37	11	128772397	128772398	+	RNA	INS	-	-	GTCTGCAT			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	-	-	-	GTCTGCAT	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	11	128772397	128772398	0	GTCTGCAT	INS	C11orf45	ENST00000530168	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	0	0	0	37	0	0	16	4	20	80	0	0.00	81	5	5.81
ENSG00000239012	0	genome.wustl.edu	37	1	142653748	142653748	+	RNA	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	1	142653748	142653748	C	T	SNP	ENSG00000239012	ENST00000459390	human	ensembl	74_37	1	novel	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	206	0	0	171	39	18.57	0	0	0.00	0	0	0.00
FBXO18	0	genome.wustl.edu	37	10	5932262	5932262	+	RNA	SNP	C	C	T			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	10	5932262	5932262	C	T	SNP	FBXO18	ENST00000462507	human	ensembl	74_37	1	known	rna	NULL	NULL	0.145	0	0	0	no_errors	0	0	0	44	0	0	26	4	13.33	4	0	0.00	3	0	0.00
ENSG00000221388	0	genome.wustl.edu	37	2	213628294	213628297	+	RNA	DEL	TGTG	TGTG	-			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	TGTG	TGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	2	213628294	213628297	TGTG	0	DEL	ENSG00000221388	ENST00000408461	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000	0	0	0	no_errors	0	0	0	22	0	0	7	2	22.22	0	0	0.00	0	0	0.00
WASH3P	0	genome.wustl.edu	37	15	102506815	102506816	+	RNA	DEL	CC	CC	-			TCGA-XU-A92V-01A-11D-A423-09	TCGA-XU-A92V-10A-01D-A426-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	07df341c-dadd-4806-8206-293b966635c8	b9db8a9c-bfe7-4157-81db-2b038358930f	15	102506815	102506816	CC	0	DEL	WASH3P	ENST00000559884	human	ensembl	74_37	1	known	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	rs151176585	ACC->A	0	10	0	0	6	4	40	0	0	0.00	0	0	0.00
