Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
DNAJC8	0	genome.wustl.edu	37	1	28536509	28536509	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	1	28536509	28536509	C	A	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	missense	c.373	p.A125S	1	superfamily_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	0	no_errors	0	0	0	42	0	0	46	15	24.59	76	0	0.00	82	31	27.43
NRAS	0	genome.wustl.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	1	115256529	115256529	T	C	SNP	NRAS	ENST00000369535	human	ensembl	74_37	-1	known	missense	c.182	p.Q61R	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	rs11554290	T->A,C,G	0	60	0	0	58	21	26.58	223	0	0.00	140	93	39.74
ATP1A2	0	genome.wustl.edu	37	1	160098515	160098515	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	1	160098515	160098515	C	T	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	1	known	missense	c.1091	p.T364M	1	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	0	0	0	28	0	0	16	23	58.97	60	0	0.00	37	32	46.38
RFWD2	0	genome.wustl.edu	37	1	176105648	176105648	+	Missense_Mutation	SNP	C	C	G			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	1	176105648	176105648	C	G	SNP	RFWD2	ENST00000367669	human	ensembl	74_37	-1	known	missense	c.867	p.L289F	1	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	0	no_errors	0	0	0	26	0	0	21	2	8.7	151	0	0.00	177	11	5.85
ADCY3	0	genome.wustl.edu	37	2	25043661	25043661	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	2	25043661	25043661	C	T	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	missense	c.3184	p.D1062N	1	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	0	no_errors	0	0	0	80	0	0	57	24	29.63	159	0	0.00	136	67	33.00
ANXA4	0	genome.wustl.edu	37	2	70008648	70008648	+	RNA	SNP	A	A	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	2	70008648	70008648	A	T	SNP	ANXA4	ENST00000460439	human	ensembl	74_37	1	known	rna	NULL	NULL	0.807	0	0	0	no_errors	0	0	0	53	0	0	34	13	27.66	197	0	0.00	113	77	40.31
PLXND1	0	genome.wustl.edu	37	3	129278491	129278491	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	3	129278491	129278491	C	T	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.5269	p.D1757N	1	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	0	no_errors	0	0	0	83	0	0	92	7	7.07	120	0	0.00	158	11	6.51
SLC23A1	0	genome.wustl.edu	37	5	138716555	138716555	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	5	138716555	138716555	C	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	missense	c.329	p.S110N	1	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	0	no_errors	0	0	0	23	0	0	15	6	28.57	33	0	0.00	44	20	30.77
PCDHB18	0	genome.wustl.edu	37	5	140615380	140615380	+	RNA	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	5	140615380	140615380	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	1	known	rna	NULL	NULL	0.871	0	0	0	no_errors	0	0	0	86	0	0	52	27	33.75	72	0	0.00	62	43	40.19
ENSG00000254741	0	genome.wustl.edu	37	8	144661891	144661891	+	RNA	SNP	C	C	A			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	8	144661891	144661891	C	A	SNP	ENSG00000254741	ENST00000529247	human	ensembl	74_37	1	known	rna	NULL	NULL	0.01	0	0	0	no_errors	0	0	0	20	0	0	17	8	32	128	0	0.00	87	43	33.08
GBA2	0	genome.wustl.edu	37	9	35748561	35748561	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	9	35748561	35748561	A	T	SNP	GBA2	ENST00000545786	human	ensembl	74_37	-1	known	missense	c.141	p.S47R	0.001	NULL	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	0	no_errors	0	0	0	36	0	0	21	13	38.24	164	2	1.20	144	53	26.90
GFI1B	0	genome.wustl.edu	37	9	135862743	135862743	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	9	135862743	135862743	A	C	SNP	GFI1B	ENST00000339463	human	ensembl	74_37	1	known	missense	c.175	p.N59H	0	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	56	0	0	27	7	20.59	121	0	0.00	106	45	29.80
NRG3	0	genome.wustl.edu	37	10	83992498	83992498	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	10	83992498	83992498	G	T	SNP	NRG3	ENST00000556918	human	ensembl	74_37	1	novel	missense	c.236	p.C79F	0.001	NULL	pfam_Neuregulin_1_C,pfscan_EG-like_dom	0	no_errors	0	0	0	51	0	0	22	11	32.35	120	0	0.00	124	31	20.00
GALNT9	0	genome.wustl.edu	37	12	132683757	132683757	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	12	132683757	132683757	G	A	SNP	GALNT9	ENST00000328957	human	ensembl	74_37	-1	known	missense	c.1459	p.R487W	0.983	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	0	no_errors	0	0	0	90	0	0	62	45	42.06	29	0	0.00	35	17	32.69
TBC1D3P5	0	genome.wustl.edu	37	17	25756876	25756876	+	RNA	SNP	G	G	A			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	17	25756876	25756876	G	A	SNP	TBC1D3P5	ENST00000581469	human	ensembl	74_37	1	known	rna	NULL	NULL	0.229	0	0	0	no_errors	rs564957228	G->A	0.9998,0.0001997	51	0	0	27	10	27.03	69	0	0.00	64	35	35.35
EVI5L	0	genome.wustl.edu	37	19	7913876	7913876	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	19	7913876	7913876	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	1	known	missense	c.397	p.D133N	0.977	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	0	no_errors	0	0	0	55	0	0	36	18	33.33	55	0	0.00	40	13	24.53
MUC16	0	genome.wustl.edu	37	19	9088508	9088508	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	19	9088508	9088508	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.3307	p.V1103I	0	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	0	no_errors	rs533537740	C->T	0.9998,0.0001997	57	0	0	54	15	21.74	121	0	0.00	95	35	26.72
ANGPTL6	0	genome.wustl.edu	37	19	10205575	10205575	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	19	10205575	10205575	G	C	SNP	ANGPTL6	ENST00000253109	human	ensembl	74_37	-1	known	missense	c.622	p.R208G	0.006	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	0	no_errors	0	0	0	30	0	0	18	13	40.62	122	0	0.00	92	45	32.85
SMARCA4	0	genome.wustl.edu	37	19	11141406	11141406	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	19	11141406	11141406	G	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	1	known	missense	c.3383	p.G1128V	1	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	0	no_errors	0	0	0	61	0	0	48	17	26.15	158	2	1.25	149	83	35.78
NF2	0	genome.wustl.edu	37	22	30050679	30050679	+	Nonsense_Mutation	SNP	G	G	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	22	30050679	30050679	G	T	SNP	NF2	ENST00000338641	human	ensembl	74_37	1	known	nonsense	c.481	p.G161*	1	pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,prints_Tropomyosin	0	no_errors	0	0	0	60	0	0	23	18	42.86	255	0	0.00	98	107	52.20
C22orf24	0	genome.wustl.edu	37	22	32330345	32330345	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	22	32330345	32330345	G	T	SNP	C22orf24	ENST00000543051	human	ensembl	74_37	-1	known	missense	c.443	p.P148H	0.009	NULL	NULL	0	no_errors	0	0	0	48	0	0	34	11	24.44	158	0	0.00	95	29	23.39
CUL4B	0	genome.wustl.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	X	119694117	119694119	GAG	0	DEL	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	in_frame_del	c.431_429	p.S146in_frame_del	0.999:1.000:1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	0	no_errors	0	0	0	36	1	2.7	31	4	11.43	76	1	1.30	110	6	5.17
MALAT1	0	genome.wustl.edu	37	11	65269764	65269765	+	RNA	INS	-	-	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	11	65269764	65269765	0	T	INS	MALAT1	ENST00000534336	human	ensembl	74_37	1	known	rna	NULL	NULL	0.981:0.994	0	0	0	no_errors	0	0	0	64	0	0	63	38	37.62	283	0	0.00	232	100	30.12
IRX3	0	genome.wustl.edu	37	16	54318612	54318614	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	GCG	GCG	GCG	-	GCG	GCG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	16	54318612	54318614	GCG	0	DEL	IRX3	ENST00000329734	human	ensembl	74_37	-1	known	in_frame_del	c.1181_1179	p.A394in_frame_del	0.605:0.606:0.549	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	0	no_errors	0	0	0	14	0	0	13	3	18.75	25	0	0.00	11	2	15.38
ZNF714	0	genome.wustl.edu	37	19	21300350	21300350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	19	21300350	21300350	A	0	DEL	ZNF714	ENST00000596143	human	ensembl	74_37	1	known	frame_shift_del	c.880	p.N294fs	0.085	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	43	0	0	37	14	27.45	78	0	0.00	64	21	24.71
ERVW-1	0	genome.wustl.edu	37	7	92098389	92098389	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	7	92098389	92098389	C	T	SNP	ERVW-1	ENST00000493463	human	ensembl	74_37	-1	known	missense	c.1307	p.G436E	0.295	pfam_TLV/ENV_coat_polyprotein	pfam_TLV/ENV_coat_polyprotein	0	no_errors	0	0	0	29	0	0	15	11	42.31	0	0	0.00	0	0	0.00
ENSG00000252176	0	genome.wustl.edu	37	8	39418512	39418512	+	RNA	SNP	C	C	T			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	8	39418512	39418512	C	T	SNP	ENSG00000252176	ENST00000516367	human	ensembl	74_37	1	novel	rna	NULL	NULL	0	0	0	0	no_errors	rs79987949	C->T	0	17	0	0	24	8	25	0	0	0.00	0	0	0.00
COL4A2-AS2	0	genome.wustl.edu	37	13	111109415	111109415	+	RNA	SNP	C	C	G			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	13	111109415	111109415	C	G	SNP	COL4A2-AS2	ENST00000458403	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.656	0	0	0	no_errors	rs9521779	C->G	0	16	0	0	9	12	57.14	0	0	0.00	0	0	0.00
GOLGA6L5	0	genome.wustl.edu	37	15	85053254	85053254	+	RNA	SNP	T	T	C			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	15	85053254	85053254	T	C	SNP	GOLGA6L5	ENST00000414190	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.973	0	0	0	no_errors	0	0	0	12	0	0	6	3	33.33	0	0	0.00	0	0	0.00
ENSG00000252176	0	genome.wustl.edu	37	8	39418521	39418522	+	RNA	DEL	AC	AC	-			TCGA-XU-A92Z-01A-11D-A423-09	TCGA-XU-A92Z-10A-01D-A426-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec301622-3933-4ba4-8190-7bb2a99e3a8d	281773d4-370a-40bc-aa2e-eaa2777e70f3	8	39418521	39418522	AC	0	DEL	ENSG00000252176	ENST00000516367	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	rs370187960	TAC->T	0	15	0	0	21	4	16	0	0	0.00	0	0	0.00
