Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MID1	0	genome.wustl.edu	37	X	10427745	10427745	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	X	10427745	10427745	A	G	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	missense	c.1388	p.V463A	1	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	0	no_errors	0	0	0	51	0	0	27	9	25	168	0	0.00	75	43	36.44
ARMCX2	0	genome.wustl.edu	37	X	100911457	100911457	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	X	100911457	100911457	C	T	SNP	ARMCX2	ENST00000328766	human	ensembl	74_37	-1	known	missense	c.1118	p.R373H	1	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	0	no_errors	0	0	0	81	0	0	26	16	37.21	155	0	0.00	74	44	36.97
AFF2	0	genome.wustl.edu	37	X	148069069	148069069	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	X	148069069	148069069	C	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	1	known	missense	c.3796	p.L1266M	1	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	0	no_errors	0	0	0	10	0	0	23	3	11.54	268	0	0.00	222	11	4.70
IDS	0	genome.wustl.edu	37	X	148564527	148564527	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	X	148564527	148564527	C	T	SNP	IDS	ENST00000340855	human	ensembl	74_37	-1	known	missense	c.1403	p.R468Q	1	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	0	no_errors	rs113993946	C->A,G,T	0	130	0	0	52	27	34.18	269	0	0.00	125	83	39.90
ENSG00000255168	0	genome.wustl.edu	37	1	145281625	145281625	+	Silent	SNP	C	C	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	1	145281625	145281625	C	G	SNP	ENSG00000255168	ENST00000468030	human	ensembl	74_37	1	known	silent	c.555	p.P185	0.997	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	0	no_errors	0	0	0	124	0	0	130	17	11.56	171	0	0.00	188	17	8.29
ENSG00000237457	0	genome.wustl.edu	37	1	190449665	190449665	+	RNA	SNP	T	T	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	1	190449665	190449665	T	C	SNP	ENSG00000237457	ENST00000424735	human	ensembl	74_37	1	known	rna	NULL	NULL	0.003	0	0	0	no_errors	0	0	0	18	0	0	7	5	35.71	360	0	0.00	256	98	27.68
RGS1	0	genome.wustl.edu	37	1	192548271	192548271	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	1	192548271	192548271	A	G	SNP	RGS1	ENST00000367459	human	ensembl	74_37	1	known	missense	c.449	p.N150S	1	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	0	no_errors	0	0	0	81	0	0	140	62	30.54	308	0	0.00	270	111	29.13
CCSAP	0	genome.wustl.edu	37	1	229478671	229478671	+	RNA	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	1	229478671	229478671	G	A	SNP	CCSAP	ENST00000483092	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	25	0	0	12	7	36.84	30	0	0.00	44	15	25.42
OR2W3	0	genome.wustl.edu	37	1	248059455	248059455	+	Silent	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	1	248059455	248059455	C	T	SNP	OR2W3	ENST00000360358	human	ensembl	74_37	1	known	silent	c.567	p.C189	0.024	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	34	0	0	27	9	25	129	0	0.00	103	58	36.02
ODC1	0	genome.wustl.edu	37	2	10584662	10584662	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	10584662	10584662	C	A	SNP	ODC1	ENST00000234111	human	ensembl	74_37	-1	known	missense	c.214	p.D72Y	1	pfam_De-COase2_N,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	0	no_errors	0	0	0	76	0	0	30	15	33.33	199	0	0.00	105	57	35.19
APLF	0	genome.wustl.edu	37	2	68753274	68753274	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	68753274	68753274	A	G	SNP	APLF	ENST00000303795	human	ensembl	74_37	1	known	missense	c.704	p.Q235R	0.671	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	0	no_errors	0	0	0	22	0	0	28	17	36.96	247	1	0.40	120	79	39.70
SCN1A	0	genome.wustl.edu	37	2	166868749	166868749	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	166868749	166868749	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.3749	p.T1250M	0.984	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	0	no_errors	rs140731963	G->A	0	27	0	0	40	14	25.93	269	0	0.00	122	66	35.11
TTN	0	genome.wustl.edu	37	2	179560833	179560833	+	Silent	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	179560833	179560833	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.27234	p.D9078	0.021	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	rs587780979	G->A	0	69	0	0	46	12	20.69	306	1	0.33	195	127	39.32
HECW2	0	genome.wustl.edu	37	2	197182045	197182045	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	197182045	197182045	C	T	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	missense	c.2387	p.R796H	1	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	0	no_errors	0	0	0	75	0	0	42	20	32.26	157	0	0.00	85	54	38.57
SPEG	0	genome.wustl.edu	37	2	220331922	220331922	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	220331922	220331922	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	1	novel	missense	c.2908	p.V970M	1	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	rs377353278	G->A	0	40	0	0	6	10	62.5	63	0	0.00	43	21	32.81
SNED1	0	genome.wustl.edu	37	2	241992589	241992589	+	Silent	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	241992589	241992589	G	A	SNP	SNED1	ENST00000310397	human	ensembl	74_37	1	known	silent	c.2103	p.P701	0	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	0	no_errors	0	0	0	9	0	0	12	5	29.41	16	0	0.00	19	15	44.12
HDLBP	0	genome.wustl.edu	37	2	242192848	242192848	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	242192848	242192848	T	C	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.1253	p.N418S	0	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	0	no_errors	rs7578199	T->C	0	52	0	0	27	9	25	224	0	0.00	128	55	30.05
KIT	0	genome.wustl.edu	37	4	55593610	55593610	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	4	55593610	55593610	T	G	SNP	KIT	ENST00000288135	human	ensembl	74_37	1	known	missense	c.1676	p.V559G	1	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	rs121913517	T->A,C,G	0	40	0	0	54	26	32.5	408	0	0.00	389	125	24.32
GPR98	0	genome.wustl.edu	37	5	90059169	90059169	+	Silent	SNP	G	G	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	5	90059169	90059169	G	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	1	known	silent	c.12168	p.V4056	1	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	0	no_errors	0	0	0	28	0	0	24	10	29.41	274	0	0.00	147	62	29.38
SLC18B1	0	genome.wustl.edu	37	6	133095445	133095445	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	6	133095445	133095445	C	T	SNP	SLC18B1	ENST00000275227	human	ensembl	74_37	-1	known	missense	c.905	p.R302K	1	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	0	no_errors	0	0	0	106	0	0	79	31	28.18	193	1	0.51	113	64	35.96
MCMDC2	0	genome.wustl.edu	37	8	67790820	67790820	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	8	67790820	67790820	A	G	SNP	MCMDC2	ENST00000422365	human	ensembl	74_37	1	known	missense	c.493	p.I165V	1	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	0	no_errors	rs200037793	A->G	0.9998,0.0001997	37	0	0	99	50	33.56	304	0	0.00	156	85	35.27
GDF6	0	genome.wustl.edu	37	8	97157553	97157553	+	Silent	SNP	C	C	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	8	97157553	97157553	C	G	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	silent	c.606	p.L202	0.998	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	0	no_errors	0	0	0	8	0	0	2	4	66.67	20	0	0.00	21	14	40.00
POP1	0	genome.wustl.edu	37	8	99169924	99169924	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	8	99169924	99169924	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	1	known	missense	c.2500	p.G834S	0	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	0	no_errors	0	0	0	58	1	1.64	23	9	28.12	123	0	0.00	57	29	33.72
CARD17	0	genome.wustl.edu	37	11	104970124	104970124	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	11	104970124	104970124	G	T	SNP	CARD17	ENST00000375707	human	ensembl	74_37	-1	known	missense	c.299	p.T100N	0	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	0	no_errors	0	0	0	47	0	0	38	14	26.92	210	2	0.94	109	52	32.30
CRIP2	0	genome.wustl.edu	37	14	105939835	105939835	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	14	105939835	105939835	A	C	SNP	CRIP2	ENST00000483017	human	ensembl	74_37	1	putative	missense	c.251	p.Q84P	0.008	pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	0	no_errors	0	0	0	58	0	0	12	8	40	66	0	0.00	44	36	44.44
ATP10A	0	genome.wustl.edu	37	15	25971102	25971102	+	Silent	SNP	T	T	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	15	25971102	25971102	T	G	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.975	p.A325	0.001	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	0	0	0	19	0	0	8	4	33.33	73	0	0.00	37	22	37.29
ALPK3	0	genome.wustl.edu	37	15	85405949	85405949	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	15	85405949	85405949	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	1	known	nonsense	c.4819	p.R1607*	1	superfamily_Kinase-like_dom,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	0	no_errors	0	0	0	50	0	0	23	11	32.35	196	2	1.01	94	58	38.16
BRD7	0	genome.wustl.edu	37	16	50357576	50357576	+	Nonsense_Mutation	SNP	A	A	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	16	50357576	50357576	A	C	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	nonsense	c.1365	p.Y455*	0.812	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	0	no_errors	0	0	0	77	0	0	16	18	52.94	85	0	0.00	19	30	61.22
FOXN1	0	genome.wustl.edu	37	17	26851036	26851036	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	17	26851036	26851036	A	G	SNP	FOXN1	ENST00000226247	human	ensembl	74_37	1	known	missense	c.49	p.T17A	0.071	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	0	0	0	130	0	0	79	20	20.2	51	0	0.00	58	22	27.50
USP32	0	genome.wustl.edu	37	17	58289456	58289456	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	17	58289456	58289456	C	T	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.2108	p.R703H	1	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	0	no_errors	0	0	0	57	0	0	152	16	9.52	395	2	0.50	394	61	13.32
ENSG00000263887	0	genome.wustl.edu	37	17	60366722	60366722	+	RNA	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	17	60366722	60366722	C	T	SNP	ENSG00000263887	ENST00000602493	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	39	0	0	100	20	16.53	229	2	0.87	268	85	24.08
CARD14	0	genome.wustl.edu	37	17	78182112	78182112	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	17	78182112	78182112	A	G	SNP	CARD14	ENST00000344227	human	ensembl	74_37	1	known	missense	c.2983	p.K995E	1	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	0	no_errors	0	0	0	110	0	0	56	28	33.33	79	1	1.25	77	31	28.70
MUC16	0	genome.wustl.edu	37	19	9016675	9016675	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	19	9016675	9016675	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38062	p.L12688I	0	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	0	no_errors	0	0	0	130	0	0	46	25	35.21	51	0	0.00	20	7	25.93
MYBL2	0	genome.wustl.edu	37	20	42331285	42331285	+	Silent	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	20	42331285	42331285	C	T	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	1	known	silent	c.1107	p.T369	0.962	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	0	no_errors	rs181688716	C->T	0.9996,0.0003994	35	0	0	23	10	30.3	80	0	0.00	79	32	28.83
CASS4	0	genome.wustl.edu	37	20	55028090	55028090	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	20	55028090	55028090	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	1	known	missense	c.1858	p.E620K	0.961	pfam_CAS_DUF3513	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	0	no_errors	0	0	0	62	0	0	52	28	35	322	0	0.00	260	78	23.08
CASS4	0	genome.wustl.edu	37	20	55028092	55028092	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	20	55028092	55028092	A	T	SNP	CASS4	ENST00000360314	human	ensembl	74_37	1	known	missense	c.1860	p.E620D	0	pfam_CAS_DUF3513	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	0	no_errors	0	0	0	61	0	0	53	28	34.57	322	0	0.00	261	79	23.24
KLHL29	0	genome.wustl.edu	37	2	23919269	23919270	+	Frame_Shift_Ins	INS	-	-	CCTCGTCT			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	-	-	-	CCTCGTCT	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	2	23919269	23919270	0	CCTCGTCT	INS	KLHL29	ENST00000486442	human	ensembl	74_37	1	known	frame_shift_ins	c.1991_1992	p.S668fs	1.000:1.000	smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	0	no_errors	0	0	0	46	0	0	21	8	27.59	164	0	0.00	119	12	9.16
CHD8	0	genome.wustl.edu	37	14	21868216	21868216	+	Frame_Shift_Del	DEL	C	C	-			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	14	21868216	21868216	C	0	DEL	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	frame_shift_del	c.4741	p.V1581fs	1	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	0	no_errors	0	0	0	42	0	0	30	20	40	219	0	0.00	137	63	31.50
QRICH2	0	genome.wustl.edu	37	17	74273351	74273351	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	17	74273351	74273351	G	0	DEL	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	frame_shift_del	c.4660	p.R1554fs	0.91	NULL	NULL	0	no_errors	0	0	0	104	0	0	57	15	20.83	80	0	0.00	61	31	33.70
HMGB1P5	0	genome.wustl.edu	37	3	22424272	22424272	+	RNA	SNP	T	T	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	3	22424272	22424272	T	C	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	1	known	rna	NULL	NULL	0.995	0	0	0	no_errors	0	0	0	21	0	0	40	6	13.04	0	0	0.00	0	0	0.00
ALG1L2	0	genome.wustl.edu	37	3	129810213	129810213	+	RNA	SNP	C	C	T			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	3	129810213	129810213	C	T	SNP	ALG1L2	ENST00000503500	human	ensembl	74_37	1	known	rna	NULL	NULL	0.97	0	0	0	no_errors	rs557466292	C->T	0.9998,0.0001997	52	0	0	19	7	26.92	0	0	0.00	0	0	0.00
PPIA	0	genome.wustl.edu	37	7	44840986	44840986	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	7	44840986	44840986	A	C	SNP	PPIA	ENST00000468812	human	ensembl	74_37	1	known	missense	c.463	p.K155Q	1	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	0	no_errors	0	0	0	45	1	2.17	34	6	15	0	0	0.00	0	0	0.00
MGC21881	0	genome.wustl.edu	37	9	66554510	66554510	+	RNA	SNP	C	C	A			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	9	66554510	66554510	C	A	SNP	MGC21881	ENST00000305709	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	429	0	0	252	34	11.76	0	0	0.00	0	0	0.00
GOLGA6L5	0	genome.wustl.edu	37	15	85053254	85053254	+	RNA	SNP	T	T	C			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	15	85053254	85053254	T	C	SNP	GOLGA6L5	ENST00000414190	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.973	0	0	0	no_errors	0	0	0	18	0	0	11	3	21.43	0	0	0.00	0	0	0.00
CTNND2	0	genome.wustl.edu	37	5	11385097	11385112	+	Frame_Shift_Del	DEL	GCCGAGCCGCCGCGCT	GCCGAGCCGCCGCGCT	-			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	GCCGAGCCGCCGCGCT	GCCGAGCCGCCGCGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	5	11385097	11385112	GCCGAGCCGCCGCGCT	0	DEL	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	frame_shift_del	c.857_842	p.Q281fs	1.000:1.000:0.994:1.000:1.000:0.999:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	0	no_errors	0	0	0	57	0	0	24	7	22.58	12	0	0.00	8	0	0.00
MED15	0	genome.wustl.edu	37	22	20918817	20918819	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-XU-A933-01A-11D-A423-09	TCGA-XU-A933-10A-01D-A426-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efc5c6fb-4660-49ff-acd5-ed6ae94a2881	11407dd0-5b1d-46b8-a640-3c2ae4071034	22	20918817	20918819	CAG	0	DEL	MED15	ENST00000263205	human	ensembl	74_37	1	known	in_frame_del	c.532_534	p.Q181in_frame_del	0.686:0.761:0.805	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	0	no_errors	0	0	0	41	1	2.38	20	3	13.04	4	0	0.00	4	0	0.00
