Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
ARHGAP6	0	genome.wustl.edu	37	X	11157087	11157087	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	X	11157087	11157087	G	A	SNP	ARHGAP6	ENST00000337414	human	ensembl	74_37	-1	known	missense	c.2821	p.R941C	0.002	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	0	no_errors	0	0	0	20	0	0	26	3	10.34	24	0	0.00	23	7	23.33
ARMCX4	0	genome.wustl.edu	37	X	100747599	100747599	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	X	100747599	100747599	G	A	SNP	ARMCX4	ENST00000423738	human	ensembl	74_37	1	putative	missense	c.4023	p.M1341I	0	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	0	no_errors	0	0	0	60	0	0	74	10	11.9	127	0	0.00	129	13	9.15
HAUS7	0	genome.wustl.edu	37	X	152722559	152722559	+	RNA	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	X	152722559	152722559	G	A	SNP	HAUS7	ENST00000464993	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	rs377562227	G->A	0	45	1	2.17	56	8	12.5	198	0	0.00	180	19	9.55
MECP2	0	genome.wustl.edu	37	X	153296828	153296828	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	X	153296828	153296828	C	T	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.451	p.D151N	1	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	0	no_errors	0	0	0	14	0	0	29	6	17.14	210	0	0.00	186	21	10.10
TAS1R1	0	genome.wustl.edu	37	1	6638782	6638782	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	1	6638782	6638782	G	A	SNP	TAS1R1	ENST00000333172	human	ensembl	74_37	1	known	missense	c.1664	p.R555H	0.886	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	0	no_errors	0	0	0	24	0	0	26	10	27.78	93	0	0.00	61	26	29.21
TRIM46	0	genome.wustl.edu	37	1	155149536	155149536	+	Silent	SNP	C	C	G			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	1	155149536	155149536	C	G	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	1	known	silent	c.798	p.A266	1	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	0	no_errors	0	0	0	42	0	0	45	16	26.23	213	0	0.00	243	63	20.52
ASTN1	0	genome.wustl.edu	37	1	176992587	176992587	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	1	176992587	176992587	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.1391	p.A464V	1	smart_EG-like_dom	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	0	no_errors	0	0	0	25	0	0	36	6	14.29	70	0	0.00	93	13	12.26
SWT1	0	genome.wustl.edu	37	1	185191111	185191111	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	1	185191111	185191111	G	A	SNP	SWT1	ENST00000367500	human	ensembl	74_37	1	known	missense	c.2252	p.R751K	0.997	NULL	smart_PIN_dom	0	no_errors	0	0	0	47	0	0	69	11	13.75	265	0	0.00	382	49	11.32
OBSCN	0	genome.wustl.edu	37	1	228466566	228466566	+	Silent	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	1	228466566	228466566	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	1	known	silent	c.7036	p.L2346	1	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	0	no_errors	0	0	0	25	0	0	25	5	16.67	79	1	1.25	126	10	7.35
ATP6V1A	0	genome.wustl.edu	37	3	113497642	113497642	+	Silent	SNP	A	A	G			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	3	113497642	113497642	A	G	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	1	known	silent	c.42	p.K14	0.939	superfamily_ATPase_F1_a/bsu_N	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	0	no_errors	0	0	0	196	0	0	147	61	29.33	238	0	0.00	130	58	30.85
CCDC158	0	genome.wustl.edu	37	4	77317601	77317601	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	4	77317601	77317601	T	C	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.109	p.T37A	0.961	NULL	superfamily_Prefoldin	0	no_errors	0	0	0	95	0	0	117	9	7.14	269	0	0.00	203	38	15.77
TRMT10A	0	genome.wustl.edu	37	4	100478534	100478534	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	4	100478534	100478534	C	T	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.388	p.A130T	1	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	0	no_errors	rs149241895	C->T	0.9996,0.0003994	58	0	0	53	6	10.17	226	0	0.00	169	38	18.36
RAPGEF6	0	genome.wustl.edu	37	5	130815362	130815362	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	5	130815362	130815362	C	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	missense	c.1925	p.R642L	1	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	0	no_errors	0	0	0	79	0	0	80	15	15.79	273	0	0.00	248	32	11.43
PCDHGA4	0	genome.wustl.edu	37	5	140736822	140736822	+	Silent	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	5	140736822	140736822	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	1	known	silent	c.2055	p.D685	0	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	30	0	0	44	6	12	60	0	0.00	45	7	13.46
SH3PXD2B	0	genome.wustl.edu	37	5	171766742	171766742	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	5	171766742	171766742	T	G	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	missense	c.1367	p.E456A	0.997	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	0	no_errors	0	0	0	25	0	0	32	3	8.57	84	0	0.00	74	9	10.84
VPS13B	0	genome.wustl.edu	37	8	100115327	100115327	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	8	100115327	100115327	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	1	known	missense	c.559	p.R187C	1	NULL	pfam_Autophagy-rel_C	0	no_errors	rs367561688	C->T	0	34	0	0	66	10	13.16	227	1	0.44	255	33	11.42
CER1	0	genome.wustl.edu	37	9	14720321	14720321	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	9	14720321	14720321	C	T	SNP	CER1	ENST00000380911	human	ensembl	74_37	-1	known	missense	c.571	p.G191R	0.729	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Cerberus,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Cerberus,pfscan_Cys_knot_C	0	no_errors	0	0	0	42	0	0	47	7	12.96	223	0	0.00	192	32	14.29
IGF2	0	genome.wustl.edu	37	11	2154871	2154871	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	11	2154871	2154871	C	T	SNP	IGF2	ENST00000434045	human	ensembl	74_37	-1	known	missense	c.350	p.R117H	0.035	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2	pfam_IGF2_C,pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2,prints_Insulin_family,prints_Insulin-like_growth_factor	0	no_errors	0	0	0	37	0	0	34	7	17.07	107	0	0.00	93	10	9.71
BSCL2	0	genome.wustl.edu	37	11	62462143	62462143	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	11	62462143	62462143	A	C	SNP	BSCL2	ENST00000360796	human	ensembl	74_37	-1	known	missense	c.527	p.L176R	1	pfam_Adipose-reg_protein_Seipin	pfam_Adipose-reg_protein_Seipin	0	no_errors	0	0	0	28	0	0	23	13	36.11	203	0	0.00	103	68	39.31
PLA2G16	0	genome.wustl.edu	37	11	63365595	63365595	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	11	63365595	63365595	G	A	SNP	PLA2G16	ENST00000323646	human	ensembl	74_37	-1	known	missense	c.56	p.P19L	0.63	NULL	pfam_LRAT-like_dom	0	no_errors	0	0	0	36	0	0	34	5	12.82	200	0	0.00	180	33	15.42
COX8A	0	genome.wustl.edu	37	11	63742168	63742168	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	11	63742168	63742168	C	T	SNP	COX8A	ENST00000314133	human	ensembl	74_37	1	known	missense	c.16	p.P6S	0.053	NULL	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	0	no_errors	0	0	0	43	0	0	49	10	16.95	113	0	0.00	83	13	13.54
TMEM225	0	genome.wustl.edu	37	11	123755310	123755310	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	11	123755310	123755310	G	A	SNP	TMEM225	ENST00000375026	human	ensembl	74_37	-1	known	missense	c.215	p.S72L	0	NULL	NULL	0	no_errors	0	0	0	49	0	0	42	24	36.36	228	2	0.87	133	57	30.00
DRAM1	0	genome.wustl.edu	37	12	102302108	102302108	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	12	102302108	102302108	A	T	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	1	known	missense	c.487	p.I163F	1	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	0	no_errors	0	0	0	34	0	0	35	7	16.67	178	0	0.00	164	34	17.09
SIPA1L1	0	genome.wustl.edu	37	14	72117205	72117205	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	14	72117205	72117205	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	1	known	nonsense	c.1972	p.R658*	1	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	0	no_errors	0	0	0	28	0	0	43	5	10.42	206	0	0.00	181	9	4.74
ALOX12	0	genome.wustl.edu	37	17	6909880	6909880	+	Nonsense_Mutation	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	17	6909880	6909880	G	A	SNP	ALOX12	ENST00000251535	human	ensembl	74_37	1	known	nonsense	c.1494	p.W498*	1	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	0	no_errors	0	0	0	37	0	0	26	5	16.13	97	0	0.00	85	9	9.47
CHD3	0	genome.wustl.edu	37	17	7810746	7810746	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	17	7810746	7810746	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	1	known	missense	c.4864	p.P1622S	0.048	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	0	no_errors	0	0	0	29	0	0	31	14	31.11	128	0	0.00	125	50	28.57
SUPT6H	0	genome.wustl.edu	37	17	27004811	27004811	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	17	27004811	27004811	G	C	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	1	known	missense	c.976	p.A326P	1	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	0	no_errors	0	0	0	31	0	0	39	9	18.75	327	0	0.00	244	39	13.73
ZNF614	0	genome.wustl.edu	37	19	52521687	52521687	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	19	52521687	52521687	C	A	SNP	ZNF614	ENST00000270649	human	ensembl	74_37	-1	known	missense	c.76	p.D26Y	0.568	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	82	0	0	81	10	10.99	130	0	0.00	86	18	17.31
SMARCAD1	0	genome.wustl.edu	37	4	95200079	95200080	+	Frame_Shift_Ins	INS	-	-	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	4	95200079	95200080	0	A	INS	SMARCAD1	ENST00000359052	human	ensembl	74_37	1	known	frame_shift_ins	c.2302_2303	p.N770fs	1.000:1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	0	no_errors	0	0	0	49	0	0	74	16	17.78	243	0	0.00	174	34	16.35
DHX37	0	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	12	125465270	125465272	CTC	0	DEL	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	0	no_errors	rs376470858	ACTC->A	0	38	0	0	43	5	10.42	41	0	0.00	23	3	11.54
TNXB	0	genome.wustl.edu	37	6	32029977	32029977	+	Silent	SNP	G	G	A			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	6	32029977	32029977	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.7125	p.H2375	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	0	no_errors	rs372616750	G->A	0.9998,0.0001997	36	0	0	24	6	20	16	0	0.00	7	0	0.00
MAML3	0	genome.wustl.edu	37	4	140810639	140810641	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-XU-A936-01A-11D-A428-09	TCGA-XU-A936-10A-01D-A42B-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b6a3a21-3fe2-47f6-99ea-9aba5bbd51b0	d40c76f9-21b5-4dcc-a0c5-ce5fa7d0a081	4	140810639	140810641	GCT	0	DEL	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	in_frame_del	c.1951_1949	p.Q650in_frame_del	0.196:0.001:0.000	NULL	pfam_Neuroggenic_mastermind-like_N	0	no_errors	0	0	0	27	0	0	23	5	17.86	29	0	0.00	10	0	0.00
