Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
UBQLN2	0	genome.wustl.edu	37	X	56590760	56590760	+	Missense_Mutation	SNP	G	G	C			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	56590760	56590760	G	C	SNP	UBQLN2	ENST00000338222	human	ensembl	74_37	1	known	missense	c.454	p.A152P	1	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	0	no_errors	0	0	0	17	0	0	21	5	19.23	51	0	0.00	53	6	10.17
MAGEA3	0	genome.wustl.edu	37	X	151935507	151935507	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	151935507	151935507	T	A	SNP	MAGEA3	ENST00000370278	human	ensembl	74_37	-1	known	missense	c.660	p.K220N	0	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	0	no_errors	0	0	0	67	0	0	42	16	27.59	47	0	0.00	25	28	52.83
EXOSC10	0	genome.wustl.edu	37	1	11158195	11158195	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	1	11158195	11158195	C	A	SNP	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	missense	c.130	p.V44L	1	pfam_Exosome-assoc_fac_Rrp6_N	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	0	no_errors	0	0	0	49	0	0	46	17	26.98	240	0	0.00	219	45	17.05
PADI3	0	genome.wustl.edu	37	1	17592171	17592171	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	1	17592171	17592171	G	T	SNP	PADI3	ENST00000375460	human	ensembl	74_37	1	known	missense	c.364	p.D122Y	0.998	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	0	no_errors	0	0	0	43	0	0	36	8	18.18	167	0	0.00	176	33	15.79
IPP	0	genome.wustl.edu	37	1	46165728	46165728	+	Silent	SNP	T	T	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	1	46165728	46165728	T	A	SNP	IPP	ENST00000396478	human	ensembl	74_37	-1	known	silent	c.1665	p.S555	0.921	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	0	no_errors	0	0	0	84	0	0	87	8	8.42	209	0	0.00	213	21	8.97
TP53BP2	0	genome.wustl.edu	37	1	224002053	224002053	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	1	224002053	224002053	G	A	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.178	p.R60C	1	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	0	no_errors	0	0	0	75	0	0	41	9	18	246	1	0.40	225	56	19.86
ATG7	0	genome.wustl.edu	37	3	11383645	11383645	+	Silent	SNP	G	G	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	3	11383645	11383645	G	T	SNP	ATG7	ENST00000354449	human	ensembl	74_37	1	known	silent	c.1017	p.L339	1	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	0	no_errors	0	0	0	86	0	0	79	21	21	237	1	0.42	201	43	17.62
ATG7	0	genome.wustl.edu	37	3	11383646	11383646	+	Missense_Mutation	SNP	A	A	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	3	11383646	11383646	A	T	SNP	ATG7	ENST00000354449	human	ensembl	74_37	1	known	missense	c.1018	p.M340L	1	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	0	no_errors	0	0	0	84	0	0	79	20	20.2	236	0	0.00	199	43	17.77
LRRFIP2	0	genome.wustl.edu	37	3	37154409	37154409	+	Silent	SNP	T	T	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	3	37154409	37154409	T	A	SNP	LRRFIP2	ENST00000336686	human	ensembl	74_37	-1	known	silent	c.435	p.L145	0.005	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_bHLH_dom,superfamily_Prefoldin	0	no_errors	0	0	0	73	0	0	60	7	10.45	155	0	0.00	221	44	16.60
ENSG00000206902	0	genome.wustl.edu	37	3	53324764	53324764	+	RNA	SNP	T	T	C			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	3	53324764	53324764	T	C	SNP	ENSG00000206902	ENST00000384175	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.001	0	0	0	no_errors	0	0	0	23	0	0	11	4	23.53	47	0	0.00	34	5	12.20
PLEKHG4B	0	genome.wustl.edu	37	5	174164	174164	+	Nonsense_Mutation	SNP	G	G	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	5	174164	174164	G	A	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	1	known	nonsense	c.3285	p.W1095*	1	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	0	no_errors	0	0	0	27	0	0	38	5	11.63	72	0	0.00	104	8	7.14
GPR116	0	genome.wustl.edu	37	6	46849840	46849840	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	6	46849840	46849840	C	T	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.617	p.R206Q	0.295	pfam_SEA_dom	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	0	no_errors	rs371340398	C->T	0	113	0	0	79	8	8.99	272	0	0.00	250	15	5.64
HCRTR2	0	genome.wustl.edu	37	6	55039563	55039563	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	6	55039563	55039563	G	T	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	1	known	missense	c.178	p.G60W	0.997	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	0	no_errors	0	0	0	65	0	0	74	20	21.28	197	1	0.51	166	51	23.50
NOD1	0	genome.wustl.edu	37	7	30491267	30491267	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	7	30491267	30491267	T	C	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.1766	p.N589S	1	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	0	no_errors	rs138046644	T->C	0	42	1	2.27	44	4	8.33	156	0	0.00	160	12	6.94
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	419	0	0	342	76	18.14	103	0	0.00	121	19	13.57
ABHD17B	0	genome.wustl.edu	37	9	74481855	74481855	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	9	74481855	74481855	C	A	SNP	ABHD17B	ENST00000377041	human	ensembl	74_37	-1	known	missense	c.715	p.D239Y	1	pfam_Peptidase_S9,pfam_Dienelactn_hydro	pfam_Peptidase_S9,pfam_Dienelactn_hydro	0	no_errors	0	0	0	54	0	0	62	8	11.43	210	1	0.47	197	14	6.64
PHRF1	0	genome.wustl.edu	37	11	609650	609650	+	Silent	SNP	C	C	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	11	609650	609650	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	1	known	silent	c.4194	p.A1398	0.046	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	0	no_errors	0	0	0	34	0	0	30	6	16.67	72	0	0.00	51	11	17.74
PLEKHA7	0	genome.wustl.edu	37	11	16809631	16809631	+	RNA	SNP	A	A	G			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	11	16809631	16809631	A	G	SNP	PLEKHA7	ENST00000332954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	34	0	0	16	5	23.81	187	0	0.00	232	58	20.00
ATG13	0	genome.wustl.edu	37	11	46671828	46671828	+	Missense_Mutation	SNP	T	T	G			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	11	46671828	46671828	T	G	SNP	ATG13	ENST00000312040	human	ensembl	74_37	1	known	missense	c.419	p.L140R	1	pfam_Autophagy-rel_p13	pfam_Autophagy-rel_p13	0	no_errors	0	0	0	60	0	0	51	4	7.27	220	0	0.00	211	13	5.80
GRIA4	0	genome.wustl.edu	37	11	105623710	105623710	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	11	105623710	105623710	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	1	known	missense	c.251	p.C84Y	1	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	0	no_errors	rs557011356	G->A	0.9998,0.0001997	55	0	0	40	5	11.11	216	0	0.00	262	21	7.42
DYRK4	0	genome.wustl.edu	37	12	4714232	4714232	+	Nonsense_Mutation	SNP	C	C	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	12	4714232	4714232	C	T	SNP	DYRK4	ENST00000010132	human	ensembl	74_37	1	known	nonsense	c.934	p.Q312*	1	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	24	0	0	14	8	36.36	126	0	0.00	124	26	17.33
OLFM4	0	genome.wustl.edu	37	13	53608550	53608550	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	13	53608550	53608550	A	G	SNP	OLFM4	ENST00000219022	human	ensembl	74_37	1	known	missense	c.272	p.D91G	0.839	NULL	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	0	no_errors	0	0	0	63	0	0	44	19	30.16	234	0	0.00	179	38	17.51
GPRC5B	0	genome.wustl.edu	37	16	19883616	19883616	+	Silent	SNP	G	G	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	16	19883616	19883616	G	A	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	silent	c.630	p.T210	0.033	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	0	no_errors	0	0	0	34	0	0	59	5	7.81	46	0	0.00	56	9	13.85
CTCF	0	genome.wustl.edu	37	16	67670755	67670755	+	Splice_Site	SNP	G	G	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	16	67670755	67670755	G	T	SNP	CTCF	ENST00000264010	human	ensembl	74_37	1	known	splice_site	c.1999+1	e9+1	1	0	0	0	no_errors	0	0	0	38	0	0	41	11	21.15	186	0	0.00	154	28	15.38
MYO15B	0	genome.wustl.edu	37	17	73590629	73590629	+	RNA	SNP	C	C	T			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	17	73590629	73590629	C	T	SNP	MYO15B	ENST00000578382	human	ensembl	74_37	1	known	rna	NULL	NULL	0.994	0	0	0	no_errors	0	0	0	33	0	0	35	10	22.22	42	0	0.00	42	13	23.64
RYR1	0	genome.wustl.edu	37	19	38954458	38954458	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	19	38954458	38954458	C	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	1	known	missense	c.2754	p.N918K	1	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	0	no_errors	0	0	0	20	0	0	13	6	30	58	0	0.00	67	12	15.19
ZNF544	0	genome.wustl.edu	37	19	58773097	58773097	+	Silent	SNP	T	T	G			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	19	58773097	58773097	T	G	SNP	ZNF544	ENST00000269829	human	ensembl	74_37	1	known	silent	c.1125	p.T375	0.92	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	65	0	0	38	15	28.3	177	0	0.00	224	39	14.77
EPB41L1	0	genome.wustl.edu	37	20	34773175	34773175	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	20	34773175	34773175	A	G	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	1	known	missense	c.703	p.N235D	1	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	0	no_errors	0	0	0	22	0	0	13	3	18.75	60	0	0.00	66	11	14.29
BCOR	0	genome.wustl.edu	37	X	39911577	39911583	+	Frame_Shift_Del	DEL	GAAAATT	GAAAATT	-			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	GAAAATT	GAAAATT	GAAAATT	-	GAAAATT	GAAAATT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	39911577	39911583	GAAAATT	0	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.5053_5047	p.N1683fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	66	0	0	47	7	12.96	152	0	0.00	98	14	12.50
BCOR	0	genome.wustl.edu	37	X	39911586	39911589	+	Frame_Shift_Del	DEL	AGCG	AGCG	-			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	AGCG	AGCG	AGCG	-	AGCG	AGCG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	39911586	39911589	AGCG	0	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.5044_5041	p.R1681fs	0.998:0.995:1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	64	0	0	38	7	15.56	146	0	0.00	89	14	13.59
USP9X	0	genome.wustl.edu	37	X	40996178	40996178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	40996178	40996178	T	0	DEL	USP9X	ENST00000324545	human	ensembl	74_37	1	known	frame_shift_del	c.557	p.I186fs	1	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	0	no_errors	0	0	0	66	0	0	50	21	29.58	130	0	0.00	91	51	35.92
HRAS	0	genome.wustl.edu	37	11	534284	534285	+	In_Frame_Ins	INS	-	-	CCG			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	-	-	-	CCG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	11	534284	534285	0	CCG	INS	HRAS	ENST00000311189	human	ensembl	74_37	-1	known	in_frame_ins	c.39_38	p.14in_frame_insG	0.990:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	40	0	0	43	9	17.31	118	0	0.00	90	11	10.89
BZRAP1-AS1	0	genome.wustl.edu	37	17	56429513	56429515	+	RNA	DEL	AAC	AAC	-			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	AAC	AAC	AAC	-	AAC	AAC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	17	56429513	56429515	AAC	0	DEL	BZRAP1-AS1	ENST00000578025	human	ensembl	74_37	1	known	rna	NULL	NULL	0.002:0.000:0.004	0	0	0	no_errors	0	0	0	31	0	0	37	9	19.57	147	0	0.00	93	27	22.50
WASH6P	0	genome.wustl.edu	37	X	155252510	155252510	+	RNA	SNP	T	T	C			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	X	155252510	155252510	T	C	SNP	WASH6P	ENST00000461007	human	ensembl	74_37	1	known	rna	NULL	NULL	0.054	0	0	0	no_errors	0	0	0	37	0	0	45	9	16.67	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102295647	102295647	+	RNA	SNP	C	C	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	15	102295647	102295647	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.961	0	0	0	no_errors	rs200665354	C->A,G	0	17	0	0	15	4	21.05	0	0	0.00	5	0	0.00
NPIPB11	0	genome.wustl.edu	37	16	29394193	29394193	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	16	29394193	29394193	G	A	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.2060	p.P687L	0.002	NULL	NULL	0	no_errors	0	0	0	15	1	6.25	14	4	22.22	0	0	0.00	0	0	0.00
KRTAP4-8	0	genome.wustl.edu	37	17	39254112	39254113	+	Frame_Shift_Ins	INS	-	-	A			TCGA-ZB-A96E-01A-11D-A428-09	TCGA-ZB-A96E-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	92295e76-5176-4206-bfe5-81936dd2dd55	6e98bcfd-c662-4103-9c48-c8935b77d8ff	17	39254112	39254113	0	A	INS	KRTAP4-8	ENST00000333822	human	ensembl	74_37	-1	known	frame_shift_ins	c.225_224	p.K76fs	0.906:1.000	NULL	pfam_Keratin-assoc	0	no_errors	0	0	0	67	1	1.47	61	6	8.96	3	0	0.00	1	0	0.00
