Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
EPAS1	0	genome.wustl.edu	37	2	46611675	46611675	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	2	46611675	46611675	C	T	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	1	known	missense	c.2489	p.S830L	1	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	0	no_errors	0	0	0	23	0	0	15	7	31.82	176	0	0.00	133	22	14.19
REV1	0	genome.wustl.edu	37	2	100020920	100020920	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	2	100020920	100020920	G	A	SNP	REV1	ENST00000258428	human	ensembl	74_37	-1	known	missense	c.3032	p.P1011L	1	pirsf_REV1	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	0	no_errors	0	0	0	83	0	0	62	19	23.46	295	0	0.00	204	41	16.73
FAT4	0	genome.wustl.edu	37	4	126370429	126370429	+	Missense_Mutation	SNP	A	A	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	4	126370429	126370429	A	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	1	known	missense	c.8258	p.Q2753L	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	42	0	0	56	8	12.5	266	0	0.00	168	25	12.95
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	374	0	0	272	78	22.29	155	0	0.00	67	22	24.72
YTHDF3	0	genome.wustl.edu	37	8	64124330	64124330	+	RNA	SNP	G	G	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	8	64124330	64124330	G	T	SNP	YTHDF3	ENST00000521674	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	55	0	0	50	13	20.63	315	0	0.00	168	60	26.32
GRID1	0	genome.wustl.edu	37	10	87362204	87362204	+	Silent	SNP	C	C	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	10	87362204	87362204	C	T	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	silent	c.2856	p.P952	0.361	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	0	no_errors	rs200390116	C->T	0	31	0	0	37	7	15.91	24	0	0.00	16	4	20.00
MPP5	0	genome.wustl.edu	37	14	67768124	67768124	+	Missense_Mutation	SNP	C	C	G			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	14	67768124	67768124	C	G	SNP	MPP5	ENST00000261681	human	ensembl	74_37	1	known	missense	c.595	p.P199A	1	smart_L27,pfscan_L27	pfam_GK/Ca_channel_bsu,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	0	no_errors	0	0	0	106	0	0	72	8	9.88	204	0	0.00	178	39	17.97
RLTPR	0	genome.wustl.edu	37	16	67691319	67691319	+	Silent	SNP	T	T	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	16	67691319	67691319	T	A	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	1	known	silent	c.4206	p.L1402	0.009	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	0	no_errors	0	0	0	67	0	0	78	15	16.13	73	0	0.00	27	10	26.32
PAFAH1B1	0	genome.wustl.edu	37	17	2541571	2541571	+	RNA	SNP	A	A	C			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	17	2541571	2541571	A	C	SNP	PAFAH1B1	ENST00000572915	human	ensembl	74_37	1	known	rna	NULL	NULL	0.999	0	0	0	no_errors	0	0	0	36	1	2.7	39	14	26.42	178	0	0.00	120	37	23.42
SEPT9	0	genome.wustl.edu	37	17	75398454	75398454	+	Silent	SNP	C	C	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	17	75398454	75398454	C	T	SNP	SEPT9	ENST00000427177	human	ensembl	74_37	1	known	silent	c.390	p.F130	0.959	NULL	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase	0	no_errors	0	0	0	65	0	0	46	20	30.3	49	0	0.00	38	8	17.39
GPLD1	0	genome.wustl.edu	37	6	24466943	24466944	+	Frame_Shift_Ins	INS	-	-	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	6	24466943	24466944	0	T	INS	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	frame_shift_ins	c.786_785	p.Y262fs	0.966:0.968	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	0	no_errors	0	0	0	72	0	0	56	15	21.13	335	0	0.00	212	35	14.17
MT-RNR2	0	genome.wustl.edu	37	MT	2916	2916	+	RNA	SNP	G	G	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	MT	2916	2916	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	128	0	0	170	23	11.92	2	0	0.00	1	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2978	2978	+	RNA	SNP	T	T	C			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	MT	2978	2978	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	72	0	0	53	38	41.3	2	0	0.00	2	0	0.00
FAM47C	0	genome.wustl.edu	37	X	37026799	37026799	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	X	37026799	37026799	A	G	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	1	known	missense	c.316	p.K106E	0.025	NULL	NULL	0	no_errors	rs143938481	A->G	0	45	0	0	48	4	7.69	7	0	0.00	9	0	0.00
SH3PXD2B	0	genome.wustl.edu	37	5	171881342	171881342	+	Silent	SNP	G	G	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	5	171881342	171881342	G	T	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	silent	c.15	p.R5	0.993	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	0	no_errors	0	0	0	48	0	0	41	4	8.89	21	0	0.00	6	0	0.00
FLJ12825	0	genome.wustl.edu	37	12	54515302	54515302	+	RNA	SNP	T	T	C			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	12	54515302	54515302	T	C	SNP	FLJ12825	ENST00000515617	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	rs139731963	T->C	0	18	0	0	7	7	50	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102294999	102294999	+	RNA	SNP	G	G	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	15	102294999	102294999	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	rs371619826	G->A	0	10	0	0	10	3	23.08	2	0	0.00	2	0	0.00
CLEC18B	0	genome.wustl.edu	37	16	74452071	74452071	+	Silent	SNP	G	G	A			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	16	74452071	74452071	G	A	SNP	CLEC18B	ENST00000339953	human	ensembl	74_37	-1	known	silent	c.342	p.P114	0	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	0	no_errors	rs62056016	G->A	0	29	0	0	22	5	18.52	3	0	0.00	1	0	0.00
KRTAP10-4	0	genome.wustl.edu	37	21	45994463	45994463	+	Silent	SNP	C	C	T			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	21	45994463	45994463	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	74_37	1	known	silent	c.828	p.C276	0.339	NULL	NULL	0	no_errors	0	0	0	52	0	0	44	4	8.33	14	0	0.00	8	0	0.00
GAGE13	0	genome.wustl.edu	37	X	49189242	49189242	+	Frame_Shift_Del	DEL	T	T	-			TCGA-ZB-A96K-01A-11D-A428-09	TCGA-ZB-A96K-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	17d87e86-0fec-4232-9b11-98cf11057310	ede73017-ccf1-40bb-931f-9e936ebe8891	X	49189242	49189242	T	0	DEL	GAGE13	ENST00000381751	human	ensembl	74_37	1	known	frame_shift_del	c.27	p.Y10fs	0.001	pfam_GAGE	pfam_GAGE	0	no_errors	0	0	0	10	0	0	9	4	30.77	0	0	0.00	0	0	0.00
