Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRRC2A	7916	broad.mit.edu	37	6	31604566	31604566	+	Silent	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr6:31604566G>A	ENST00000376033.2	+	28	6225	c.5991G>A	c.(5989-5991)ccG>ccA	p.P1997P	PRRC2A_ENST00000376007.4_Silent_p.P1997P	NM_004638.3	NP_004629.3	P48634	PRC2A_HUMAN	proline-rich coiled-coil 2A	1997	3 X 50 AA type C repeats.					cytoplasm|nucleus	protein binding			breast(6)|central_nervous_system(1)|endometrium(7)|kidney(5)|large_intestine(14)|lung(19)|ovary(3)|pancreas(2)|prostate(4)|skin(5)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	70						GCTCCCTGCCGCCAGCACCAC	0.612000													8	282					0	0	0.006214	0	0
IL6R	3570	broad.mit.edu	37	1	154407116	154407116	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr1:154407116G>A	ENST00000368485.3	+	4	1017	c.580G>A	c.(580-582)Gtc>Atc	p.V194I	IL6R_ENST00000344086.4_Missense_Mutation_p.V194I	NM_000565.3	NP_000556.1	P08887	IL6RA_HUMAN	interleukin 6 receptor	194					acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity	p.V194I(1)	IL6R/ATP8B2(2)	breast(2)|large_intestine(1)|ovary(3)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTCCATGTGCGTCGCCAGTAG	0.532000													6	159					0	0	0.001168	0	0
CA8	767	broad.mit.edu	37	8	61135309	61135309	+	Missense_Mutation	SNP	G	G	A	rs145210688	by1000genomes	TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr8:61135309G>A	ENST00000317995.4	-	7	901	c.637C>T	c.(637-639)Cgg>Tgg	p.R213W	CA8_ENST00000528666.1_5'UTR	NM_004056.4	NP_004047.3	P35219	CAH8_HUMAN	carbonic anhydrase VIII	213					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding			endometrium(2)|large_intestine(5)|lung(6)|prostate(2)|skin(1)	16		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				CAGTAATCCCGCAGCAGAGGG	0.438000													15	77					0	0	0.003163	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540672	40540672	+	Silent	SNP	T	T	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr19:40540672T>A	ENST00000434248.1	-	5	2159	c.2094A>T	c.(2092-2094)gtA>gtT	p.V698V	ZNF780B_ENST00000221355.6_Silent_p.V550V	NM_001005851.2	NP_001005851.1	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	698					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|kidney(2)|large_intestine(3)|lung(12)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	23	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					ACTCCTTACATACAAAGGGTT	0.388000													10	137					0	0	0.006214	0	0
DEPDC5	9681	broad.mit.edu	37	22	32289633	32289633	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr22:32289633C>G	ENST00000400246.1	+	39	4241	c.4099C>G	c.(4099-4101)Ctg>Gtg	p.L1367V	DEPDC5_ENST00000535622.1_Missense_Mutation_p.L1267V|DEPDC5_ENST00000539165.1_Missense_Mutation_p.L184V|DEPDC5_ENST00000382112.3_Missense_Mutation_p.L1358V|DEPDC5_ENST00000400249.2_Missense_Mutation_p.L1336V|DEPDC5_ENST00000382111.2_Missense_Mutation_p.L1367V|DEPDC5_ENST00000266091.3_Missense_Mutation_p.L1345V|DEPDC5_ENST00000400248.1_Missense_Mutation_p.L1336V|DEPDC5_ENST00000382105.2_3'UTR			O75140	DEPD5_HUMAN	DEP domain containing 5	1336					intracellular signal transduction					breast(1)|central_nervous_system(5)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(24)|ovary(5)|pancreas(2)|prostate(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	63						CACAGACCGGCTGGAGTGGTG	0.557000													5	59					0	0	0.000602	0	0
FAM214B	80256	broad.mit.edu	37	9	35107547	35107547	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr9:35107547C>T	ENST00000378561.1	-	2	3780	c.725G>A	c.(724-726)cGa>cAa	p.R242Q	FAM214B_ENST00000322813.5_Missense_Mutation_p.R242Q|FAM214B_ENST00000488109.2_Missense_Mutation_p.R242Q|FAM214B_ENST00000378557.1_Missense_Mutation_p.R242Q|FAM214B_ENST00000603301.1_Missense_Mutation_p.R242Q|FAM214B_ENST00000378566.1_5'UTR|FAM214B_ENST00000378554.2_Missense_Mutation_p.R242Q|FAM214B_ENST00000605244.1_Missense_Mutation_p.R242Q			Q7L5A3	K1539_HUMAN	family with sequence similarity 214, member B	242						nucleus											AAGCAGCCTTCGCTTGGTGGG	0.697000													5	139					0	0	0.001168	0	0
F9	2158	broad.mit.edu	37	X	138643694	138643694	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chrX:138643694A>T	ENST00000218099.2	+	8	857	c.850A>T	c.(850-852)Att>Ttt	p.I284F	F9_ENST00000394090.2_Missense_Mutation_p.I246F	NM_000133.3	NP_000124.1	P00740	FA9_HUMAN	coagulation factor IX	284	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			breast(1)|central_nervous_system(2)|endometrium(4)|large_intestine(7)|lung(19)|ovary(1)|skin(1)	35	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	TGAACATAATATTGAGGAGAC	0.333000													13	90					0	0	0.013537	0	0
HAUS7	55559	broad.mit.edu	37	X	152730472	152730472	+	Missense_Mutation	SNP	C	C	A	rs141087618		TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chrX:152730472C>A	ENST00000370219.3	-	3	853	c.296G>T	c.(295-297)gGg>gTg	p.G99V	HAUS7_ENST00000421080.2_Intron|TREX2_ENST00000370232.1_5'UTR|TREX2_ENST00000338525.2_5'UTR|TREX2_ENST00000330912.2_5'UTR|TREX2_ENST00000334497.2_5'UTR|HAUS7_ENST00000370210.1_Missense_Mutation_p.G89V|HAUS7_ENST00000370211.4_Missense_Mutation_p.G89V|HAUS7_ENST00000370212.3_Missense_Mutation_p.G99V	NM_017518.6	NP_059988.3	Q99871	HAUS7_HUMAN	HAUS augmin-like complex, subunit 7	99					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleolus|plasma membrane|spindle	thioesterase binding			endometrium(1)|kidney(3)|large_intestine(1)|lung(10)|prostate(1)|skin(3)	19						TGTTGGGACCCCTTTCAGTGA	0.577000													17	359					1.56452e-12	5.72549e-12	0.007413	1	0
GAK	2580	broad.mit.edu	37	4	861163	861163	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr4:861163G>C	ENST00000314167.4	-	21	2563	c.2453C>G	c.(2452-2454)gCc>gGc	p.A818G	GAK_ENST00000511163.1_Missense_Mutation_p.A739G|GAK_ENST00000509566.1_5'UTR	NM_005255.2	NP_005246.2	O14976	GAK_HUMAN	cyclin G associated kinase	818					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			autonomic_ganglia(1)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(7)|lung(16)|skin(7)|urinary_tract(2)	39				Colorectal(103;0.219)		CTCCATCAGGGCAGACTCGCT	0.597000													5	128					0	0	0.001168	0	0
DOK1	1796	broad.mit.edu	37	2	74783609	74783609	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr2:74783609G>C	ENST00000233668.5	+	5	1483	c.814G>C	c.(814-816)Ggg>Cgg	p.G272R	DOK1_ENST00000340004.6_3'UTR|DOK1_ENST00000480318.1_3'UTR|DOK1_ENST00000409429.1_Missense_Mutation_p.G133R	NM_001381.3	NP_001372.1	Q99704	DOK1_HUMAN	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	272					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding			endometrium(3)|large_intestine(2)|liver(2)|lung(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	16						CTCCCATGAAGGGGAGGTGGC	0.612000													4	91					0	0	0.009096	0	0
TRPM1	4308	broad.mit.edu	37	15	31362283	31362283	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr15:31362283G>T	ENST00000542188.1	-	3	594	c.281C>A	c.(280-282)tCc>tAc	p.S94Y	TRPM1_ENST00000256552.6_Missense_Mutation_p.S77Y|TRPM1_ENST00000397795.2_Missense_Mutation_p.S55Y|TRPM1_ENST00000559179.1_Missense_Mutation_p.S55Y	NM_001252020.1	NP_001238949.1	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel, subfamily M, member 1	55					cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			NS(2)|breast(3)|central_nervous_system(3)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(15)|lung(48)|ovary(2)|pancreas(1)|prostate(3)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(3)	99		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		AACTCCATAGGAATCTGTTGG	0.483000													12	557					2.27111e-07	7.97206e-07	0.013537	1	0
SUN1	23353	broad.mit.edu	37	7	891656	891656	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr7:891656G>A	ENST00000456758.2	+	13	1394	c.1394G>A	c.(1393-1395)tGg>tAg	p.W465*	SUN1_ENST00000452783.2_Nonsense_Mutation_p.W174*|SUN1_ENST00000401592.1_Nonsense_Mutation_p.W276*|SUN1_ENST00000413514.2_Nonsense_Mutation_p.W85*|SUN1_ENST00000389574.3_Nonsense_Mutation_p.W193*|SUN1_ENST00000425407.2_Nonsense_Mutation_p.W193*|SUN1_ENST00000405266.1_Nonsense_Mutation_p.W313*			O94901	SUN1_HUMAN	Sad1 and UNC84 domain containing 1	303					cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding			NS(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(17)|upper_aerodigestive_tract(1)|urinary_tract(1)	30						TTGATTTCTTGGCTGAATGTG	0.433000													4	111					0	0	0.001168	0	0
ZBTB18	10472	broad.mit.edu	37	1	244217659	244217659	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr1:244217659C>T	ENST00000358704.4	+	2	732	c.583C>T	c.(583-585)Cga>Tga	p.R195*		NM_001278196.1|NM_006352.4|NM_205768.2	NP_001265125.1|NP_006343.2|NP_991331.1			zinc finger and BTB domain containing 18									p.R186*(2)									CATGTGGATGCGATTGCCCTC	0.572000													7	74					0	0	0.001984	0	0
GPR6	2830	broad.mit.edu	37	6	110300574	110300574	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr6:110300574G>A	ENST00000414000.2	+	3	543	c.304G>A	c.(304-306)Gct>Act	p.A102T	GPR6_ENST00000275169.3_Missense_Mutation_p.A87T			P46095	GPR6_HUMAN	G protein-coupled receptor 6	87						integral to plasma membrane				breast(1)|endometrium(1)|large_intestine(7)|lung(7)|prostate(1)|skin(1)	18		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		GACAGTGATCGCTGGAGAAAA	0.672000													7	157					0	0	0.001984	0	0
SOX2	6657	broad.mit.edu	37	3	181430843	181430843	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr3:181430843C>T	ENST00000325404.1	+	1	1122	c.695C>T	c.(694-696)aCc>aTc	p.T232I	SOX2_ENST00000431565.2_Missense_Mutation_p.T232I	NM_003106.3	NP_003097.1	P48431	SOX2_HUMAN	SRY (sex determining region Y)-box 2	232					cell cycle arrest|chromatin organization|eye development|glial cell fate commitment|inner ear development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell proliferation|negative regulation of neuron differentiation|osteoblast differentiation|pituitary gland development|positive regulation of MAPKKK cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of caspase activity|response to growth factor stimulus|response to wounding|somatic stem cell maintenance	cytosol|transcription factor complex	miRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			cervix(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(1)|skin(1)	10	all_cancers(143;1.22e-16)|Ovarian(172;0.0283)		all cancers(12;1.82e-48)|Epithelial(37;9.85e-40)|OV - Ovarian serous cystadenocarcinoma(80;7.37e-23)|Lung(8;2.01e-21)|GBM - Glioblastoma multiforme(1;2.13e-08)			CAGCAGGGCACCCCTGGCATG	0.642000			A		"""NSCLC, oesophageal squamous carcinoma"""		MICROPHTHALMIA AND ESOPHAGEAL ATRESIA SYNDROME						7	71					0	0	0.001984	0	0
MAFK	7975	broad.mit.edu	37	7	1579888	1579888	+	Silent	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr7:1579888C>T	ENST00000343242.4	+	3	577	c.348C>T	c.(346-348)acC>acT	p.T116T		NM_002360.3	NP_002351.1	O60675	MAFK_HUMAN	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K	116					blood coagulation	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity						Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.75e-15)		CGCTGCAGACCTTCGCGCGCA	0.682000													5	29					0	0	0.000602	0	0
PELI3	246330	broad.mit.edu	37	11	66238754	66238754	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:66238754G>A	ENST00000349459.6	+	3	478	c.194G>A	c.(193-195)cGa>cAa	p.R65Q	PELI3_ENST00000524466.1_Missense_Mutation_p.R89Q|PELI3_ENST00000531856.1_Intron|PELI3_ENST00000320740.7_Missense_Mutation_p.R89Q	NM_001098510.1	NP_001091980.1	Q8N2H9	PELI3_HUMAN	pellino E3 ubiquitin protein ligase family member 3	89						cytosol	protein binding	p.R89Q(1)		breast(1)|endometrium(2)|large_intestine(4)|lung(4)|ovary(2)|prostate(1)|skin(1)	15						GGCCGCCGGCGAAGCCGCCTG	0.597000													6	184					0	0	0.001984	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274206	39274206	+	Missense_Mutation	SNP	C	C	T	rs79388709		TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr17:39274206C>T	ENST00000391413.2	-	1	400	c.362G>A	c.(361-363)aGa>aAa	p.R121K		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	121	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament		p.R121K(5)		endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gcactggggtctgcagcagct	0.652000													5	64					0	0	0.001168	0	0
CCDC80	151887	broad.mit.edu	37	3	112324348	112324348	+	Silent	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr3:112324348G>A	ENST00000206423.3	-	8	3722	c.2769C>T	c.(2767-2769)taC>taT	p.Y923Y	CCDC80_ENST00000439685.2_Silent_p.Y923Y	NM_199511.1|NM_199512.1	NP_955805.1|NP_955806.1	Q76M96	CCD80_HUMAN	coiled-coil domain containing 80	923										breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(13)|liver(1)|lung(21)|ovary(3)|pancreas(2)|prostate(4)	51						GGTAACTATGGTAACCATAGC	0.463000													4	83					0	0	0.009096	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42854281	42854281	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr12:42854281G>A	ENST00000455697.1	-	8	2111	c.1826C>T	c.(1825-1827)cCt>cTt	p.P609L	PRICKLE1_ENST00000548696.1_Missense_Mutation_p.P609L|RP11-328C8.4_ENST00000547824.1_RNA|PRICKLE1_ENST00000552240.1_Missense_Mutation_p.P609L|PRICKLE1_ENST00000445766.2_Missense_Mutation_p.P609L|PRICKLE1_ENST00000345127.3_Missense_Mutation_p.P609L	NM_001144882.1|NM_001144883.1	NP_001138354.1|NP_001138355.1	Q96MT3	PRIC1_HUMAN	prickle homolog 1 (Drosophila)	609					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			NS(1)|breast(2)|endometrium(4)|kidney(2)|large_intestine(12)|liver(1)|lung(13)|ovary(3)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	47	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		CTTCTCTTCAGGCAGGATTTT	0.463000													5	111					0	0	0.000602	0	0
HIST1H1C	3006	broad.mit.edu	37	6	26056369	26056369	+	Silent	SNP	C	C	G			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr6:26056369C>G	ENST00000343677.2	-	1	330	c.288G>C	c.(286-288)acG>acC	p.T96T		NM_005319.3	NP_005310.1	P16403	H12_HUMAN	histone cluster 1, H1c	96	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			NS(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(6)|kidney(1)|large_intestine(1)|lung(8)|ovary(4)|prostate(3)|skin(3)|upper_aerodigestive_tract(3)	34						CGGTGCCTTTCGTTTGCACCA	0.532000													6	178					0	0	0.001984	0	0
BCRP7	100133163	broad.mit.edu	37	22	18846140	18846140	+	RNA	SNP	T	T	C			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr22:18846140T>C	ENST00000412938.1	+	0	3498																											TAGGGCACCTTGGACCTCTCT	0.617000													3	20					0	0	0.000602	0	0
TIAM1	7074	broad.mit.edu	37	21	32502548	32502548	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr21:32502548C>G	ENST00000286827.3	-	26	4499	c.4028G>C	c.(4027-4029)cGa>cCa	p.R1343P	TIAM1_ENST00000541036.1_Missense_Mutation_p.R1283P	NM_003253.2	NP_003244.2	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1343	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity	p.R1343L(2)		autonomic_ganglia(3)|breast(7)|central_nervous_system(2)|endometrium(13)|kidney(4)|large_intestine(33)|lung(44)|ovary(2)|prostate(3)|skin(2)|urinary_tract(2)	115						CGCCAAAGCTCGAACCTGCAG	0.483000													3	214					0	0	0.004672	0	0
OR4A16	81327	broad.mit.edu	37	11	55111250	55111250	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:55111250T>A	ENST00000314721.2	+	1	624	c.574T>A	c.(574-576)Ttt>Att	p.F192I		NM_001005274.1	NP_001005274.1	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A, member 16	192					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(28)|pancreas(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)	51						TGACACCTACTTTATAGGACT	0.423000													7	145					0	0	0.001984	0	0
CNTNAP3B	728577	broad.mit.edu	37	9	43915893	43915893	+	Missense_Mutation	SNP	G	G	C	rs143747399	by1000genomes	TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr9:43915893G>C	ENST00000377564.3	+	23	4134	c.3741G>C	c.(3739-3741)atG>atC	p.M1247I		NM_001201380.1	NP_001188309.1	Q96NU0	CNT3B_HUMAN	contactin associated protein-like 3B	1247					cell adhesion|signal transduction	integral to membrane	receptor binding			central_nervous_system(1)|endometrium(2)|lung(3)|pancreas(1)|prostate(3)	10						CTGCTGTCATGGGAGGTAACA	0.433000													3	37					0	0	0.004672	0	0
AWAT1	158833	broad.mit.edu	37	X	69455618	69455618	+	Silent	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chrX:69455618G>A	ENST00000374521.3	+	2	170	c.129G>A	c.(127-129)ccG>ccA	p.P43P	AWAT1_ENST00000480702.1_3'UTR	NM_001013579.2	NP_001013597.1	Q58HT5	AWAT1_HUMAN	acyl-CoA wax alcohol acyltransferase 1	43					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			breast(2)|central_nervous_system(1)|large_intestine(4)|lung(3)|ovary(4)|skin(1)	15						CCTTGTGGCCGCTACCAGTGC	0.488000													6	243					0	0	0.001168	0	0
LRIG2	9860	broad.mit.edu	37	1	113616160	113616160	+	Silent	SNP	C	C	G			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr1:113616160C>G	ENST00000361127.4	+	1	330	c.132C>G	c.(130-132)ccC>ccG	p.P44P		NM_014813.1	NP_055628.1	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like domains 2	44	LRRNT.					cytoplasm|integral to membrane|plasma membrane				breast(1)|endometrium(2)|kidney(7)|large_intestine(3)|lung(10)|ovary(4)|prostate(2)|stomach(1)|urinary_tract(1)	31	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		GTCTCTGCCCCGCGCCCTGCT	0.657000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	206					0	0	0.001984	0	0
CAMK2D	817	broad.mit.edu	37	4	114680566	114680566	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr4:114680566C>T	ENST00000454265.2	-	2	928	c.70G>A	c.(70-72)Gca>Aca	p.A24T	CAMK2D_ENST00000394522.3_Missense_Mutation_p.A24T|CAMK2D_ENST00000508738.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000515496.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000418639.2_Missense_Mutation_p.A24T|CAMK2D_ENST00000296402.5_Missense_Mutation_p.A24T|CAMK2D_ENST00000394526.2_Missense_Mutation_p.A24T|CAMK2D_ENST00000505990.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000509907.1_5'UTR|CAMK2D_ENST00000379773.2_Missense_Mutation_p.A24T|CAMK2D_ENST00000511664.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000514328.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000429180.1_Missense_Mutation_p.A24T|CAMK2D_ENST00000394524.3_Missense_Mutation_p.A24T|CAMK2D_ENST00000342666.5_Missense_Mutation_p.A24T			Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II delta	24	Protein kinase.				interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|ovary(1)|prostate(1)	13		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		ACTGAGAATGCCCCCCTGGAA	0.323000													4	87					0	0	0.009096	0	0
ASCL3	56676	broad.mit.edu	37	11	8959494	8959494	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:8959494C>T	ENST00000325884.1	-	2	274	c.215G>A	c.(214-216)tGc>tAc	p.C72Y	ASCL3_ENST00000531618.1_Missense_Mutation_p.C72Y	NM_020646.1	NP_065697.1	Q9NQ33	ASCL3_HUMAN	achaete-scute family bHLH transcription factor 3	71					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleolus	DNA binding			breast(1)|large_intestine(2)|lung(5)|stomach(1)	9				Epithelial(150;1.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0228)		AGAGAAGGGGCAGGGTTCACT	0.577000													6	77					0	0	0.001168	0	0
RRN3P2	653390	broad.mit.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C	rs151074589	by1000genomes	TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr16:29110458T>C	ENST00000564580.1	+	0	1131																		p.W375R(25)									GAATTTTGAGTGGATAGTGAT	0.328000													4	43					0	0	0.009096	0	0
ESPNP	284729	broad.mit.edu	37	1	17023110	17023110	+	RNA	SNP	G	G	A	rs11260887	by1000genomes	TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr1:17023110G>A	ENST00000492551.1	-	0	1753					NR_026567.1																						GTTGAGCAGCGGCTGAAACCC	0.687000													5	20					0	0	0.001168	0	0
ASIC1	41	broad.mit.edu	37	12	50472360	50472360	+	Splice_Site	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr12:50472360G>A	ENST00000228468.4	+	6	1379	c.994_splice	c.e6+1	p.G332_splice	ASIC1_ENST00000552438.1_Splice_Site_p.G366_splice|ASIC1_ENST00000447966.2_Splice_Site_p.G332_splice	NM_020039.3	NP_064423.2	P78348	ACCN2_HUMAN	acid-sensing (proton-gated) ion channel 1	332					calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding									Amiloride(DB00594)	GCACATGCCAGGTCAGGCCTG	0.592000													4	131					0	0	0.009096	0	0
TIGD3	220359	broad.mit.edu	37	11	65124576	65124576	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:65124576G>A	ENST00000309880.5	+	2	1504	c.1297G>A	c.(1297-1299)Gat>Aat	p.D433N		NM_145719.2	NP_663771.1	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	433					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding			endometrium(3)|large_intestine(1)|lung(9)|prostate(2)|skin(2)	17						CACCAAAGCTGATGCCCTCCG	0.562000													12	109					0	0	0.010729	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564921	46564921	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:46564921C>T	ENST00000458649.2	-	7	1064	c.646G>A	c.(646-648)Gat>Aat	p.D216N	AMBRA1_ENST00000426438.1_Missense_Mutation_p.D216N|AMBRA1_ENST00000533727.1_Missense_Mutation_p.D216N|AMBRA1_ENST00000314845.3_Missense_Mutation_p.D216N|AMBRA1_ENST00000528950.1_Missense_Mutation_p.D216N|AMBRA1_ENST00000298834.3_Missense_Mutation_p.D216N|AMBRA1_ENST00000534300.1_Missense_Mutation_p.D216N			Q9C0C7	AMRA1_HUMAN	autophagy/beclin-1 regulator 1	216					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				NS(1)|breast(3)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(6)|lung(10)|ovary(2)|prostate(1)|skin(1)|urinary_tract(2)	39				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCTGTTCCATCTATGGGGATC	0.542000													16	98					0	0	0.004007	0	0
ATN1	1822	broad.mit.edu	37	12	7044927	7044927	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr12:7044927C>G	ENST00000356654.4	+	5	734	c.497C>G	c.(496-498)cCt>cGt	p.P166R	ATN1_ENST00000396684.2_Missense_Mutation_p.P166R	NM_001007026.1	NP_001007027.1	P54259	ATN1_HUMAN	atrophin 1	166					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			breast(5)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(15)|ovary(2)|pancreas(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(2)	40						CCACTCTTTCCTCCTTCCCCT	0.592000													4	149					0	0	0.009096	0	0
DCAF6	55827	broad.mit.edu	37	1	167906205	167906205	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr1:167906205T>C	ENST00000367840.3	+	1	150	c.56T>C	c.(55-57)cTc>cCc	p.L19P	DCAF6_ENST00000470919.1_Intron|DCAF6_ENST00000367843.3_Missense_Mutation_p.L19P|DCAF6_ENST00000312263.6_Missense_Mutation_p.L19P|MPC2_ENST00000271373.4_5'UTR|DCAF6_ENST00000432587.2_Missense_Mutation_p.L19P	NM_001198956.1	NP_001185885.1	Q58WW2	DCAF6_HUMAN	DDB1 and CUL4 associated factor 6	19					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|kidney(3)|large_intestine(8)|lung(10)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	36						AAAAGGTCCCTCGGGCTGGAG	0.721000													3	23					0	0	0.004672	0	0
KIAA1109	84162	broad.mit.edu	37	4	123147970	123147970	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr4:123147970C>T	ENST00000264501.4	+	24	3275	c.2902C>T	c.(2902-2904)Cgt>Tgt	p.R968C	KIAA1109_ENST00000455637.1_Missense_Mutation_p.R968C|KIAA1109_ENST00000388738.3_Missense_Mutation_p.R968C|KIAA1109_ENST00000495260.1_3'UTR			Q2LD37	K1109_HUMAN	KIAA1109	968					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				breast(7)|central_nervous_system(1)|cervix(1)|endometrium(16)|kidney(6)|large_intestine(33)|liver(4)|lung(74)|ovary(9)|pancreas(1)|prostate(5)|skin(6)|upper_aerodigestive_tract(6)|urinary_tract(3)	172						TGGAATTGATCGTCGGTTCTG	0.338000													5	74					0	0	0.000602	0	0
LPA	4018	broad.mit.edu	37	6	160952810	160952810	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr6:160952810C>A	ENST00000447678.1	-	40	6194	c.6074G>T	c.(6073-6075)cGt>cTt	p.R2025L	LPA_ENST00000316300.5_Missense_Mutation_p.R2025L|LPA_ENST00000484276.1_Intron	NM_005577.2	NP_005568.2	P08519	APOA_HUMAN	lipoprotein, Lp(a)	4533	Kringle 18.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			NS(1)|breast(3)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(16)|lung(54)|ovary(4)|pancreas(1)|prostate(2)|skin(10)|stomach(1)|urinary_tract(1)	107		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CCTTGAAACACGAGCATAGAC	0.458000													6	82					4.096e-09	1.46773e-08	0.001168	1	0
FJX1	24147	broad.mit.edu	37	11	35640755	35640755	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr11:35640755G>A	ENST00000317811.4	+	1	1021	c.571G>A	c.(571-573)Gag>Aag	p.E191K		NM_014344.3	NP_055159.2	Q86VR8	FJX1_HUMAN	four jointed box 1 (Drosophila)	191						extracellular space		p.E191K(2)		lung(1)|urinary_tract(1)	2	all_cancers(35;0.177)|all_lung(20;0.0238)|Lung NSC(22;0.0494)|all_epithelial(35;0.0739)	all_hematologic(20;0.107)				GATTCAGGGCGAGGCCCTGTC	0.731000													7	25					0	0	0.003080	0	0
SGCE	8910	broad.mit.edu	37	7	94230126	94230126	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr7:94230126C>T	ENST00000415788.2	-	8	1064	c.977G>A	c.(976-978)cGt>cAt	p.R326H	SGCE_ENST00000265735.7_Missense_Mutation_p.R290H|SGCE_ENST00000437425.2_Missense_Mutation_p.R249H|SGCE_ENST00000447873.1_Missense_Mutation_p.R290H|SGCE_ENST00000428696.2_Missense_Mutation_p.R290H|SGCE_ENST00000445866.2_Missense_Mutation_p.R290H			O43556	SGCE_HUMAN	sarcoglycan, epsilon	290	Cys-rich.				cell-matrix adhesion|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma	calcium ion binding			NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(3)|ovary(1)|skin(1)	14	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			CCCCTCTCCACGAATCACTTC	0.378000													9	39					0	0	0.008291	0	0
SDCBP	6386	broad.mit.edu	37	8	59492228	59492228	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr8:59492228G>A	ENST00000523483.1	+	8	2199	c.685G>A	c.(685-687)Gtt>Att	p.V229I	SDCBP_ENST00000422546.2_Missense_Mutation_p.V208I|SDCBP_ENST00000447182.2_Missense_Mutation_p.V208I|SDCBP_ENST00000260130.4_Missense_Mutation_p.V209I|SDCBP_ENST00000447267.2_Missense_Mutation_p.V155I|SDCBP_ENST00000520168.1_Missense_Mutation_p.V150I|SDCBP_ENST00000424270.2_Missense_Mutation_p.V203I|SDCBP_ENST00000413219.2_Missense_Mutation_p.V209I			O00560	SDCB1_HUMAN	syndecan binding protein (syntenin)	209	PDZ 2.				actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding			breast(1)|cervix(2)|kidney(1)|large_intestine(1)|lung(1)|skin(1)|urinary_tract(1)	8		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				CACTGGACATGTTGGTTTTAT	0.338000													5	72					0	0	0.001984	0	0
C6	729	broad.mit.edu	37	5	41159281	41159281	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr5:41159281G>A	ENST00000263413.3	-	12	2023	c.1759C>T	c.(1759-1761)Cga>Tga	p.R587*	C6_ENST00000337836.5_Nonsense_Mutation_p.R587*	NM_001115131.1	NP_001108603.2	P13671	CO6_HUMAN	complement component 6	587	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			central_nervous_system(2)|cervix(2)|endometrium(2)|kidney(7)|large_intestine(16)|liver(1)|lung(51)|ovary(3)|prostate(1)|skin(9)|upper_aerodigestive_tract(2)	96		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTGCATTCTCGGGTTCTCGAT	0.493000													5	105					0	0	0.000602	0	0
NBEAL1	65065	broad.mit.edu	37	2	203922058	203922058	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr2:203922058delA	ENST00000449802.1	+	6	730	c.397delA	c.(397-399)aafs	p.K135fs	NBEAL1_ENST00000478884.1_3'UTR	NM_001114132.1	NP_001107604.1	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1	135							binding			NS(1)|breast(3)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(8)|liver(1)|lung(8)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	37						GTTAAAAAGCAAAAAAAAAGA	0.318													3	3	---	---	---	---					
KRT8P30	391485	broad.mit.edu	37	2	219818739	219818739	+	RNA	DEL	G	G	-			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr2:219818739delG	ENST00000429343.1	-	0	45																											GCCTCAGCCCGACTGTGGATG	0.517													2	4	---	---	---	---					
CHAT	1103	broad.mit.edu	37	10	50872950	50872952	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr10:50872950_50872952delCTT	ENST00000395562.2	+	16	2328_2330	c.1859_1861delCTT	c.(1858-1863)act>a	p.TS620del	CHAT_ENST00000395559.2_In_Frame_Del_p.TS584del|CHAT_ENST00000455728.2_Intron|CHAT_ENST00000337653.2_In_Frame_Del_p.TS702del|CHAT_ENST00000339797.1_In_Frame_Del_p.TS584del|CHAT_ENST00000351556.3_In_Frame_Del_p.TS584del	NM_001142933.1|NM_001142934.1	NP_001136405.1|NP_001136406.1	P28329	CLAT_HUMAN	choline O-acetyltransferase	702					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)|endometrium(2)|kidney(2)|large_intestine(11)|lung(34)|prostate(3)|urinary_tract(1)	56		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TGCAAAGAGACTTCTTCTAGCAA	0.502													8	306	---	---	---	---					
KBTBD13	390594	broad.mit.edu	37	15	65369216	65369216	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CR-7392-01A-11D-2012-08	TCGA-CR-7392-10A-01D-2013-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0616d3e5-9641-4329-a65a-19f4c6918e1c	6af45747-7234-43ab-a250-f346349301fd	g.chr15:65369216delC	ENST00000432196.2	+	1	63	c.63delC	c.(61-63)gafs	p.D21fs		NM_001101362.2	NP_001094832.1	C9JR72	KBTBD_HUMAN	kelch repeat and BTB (POZ) domain containing 13	21	BTB.					cytoplasm				lung(1)|prostate(1)|skin(1)	3						TCCAAGCCGACCGCGCCCTGC	0.721													2	4	---	---	---	---					
