Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
USP28	57646	broad.mit.edu	37	11	113670032	113670032	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:113670032T>C	ENST00000003302.4	-	25	3232	c.3164A>G	c.(3163-3165)tAt>tGt	p.Y1055C	USP28_ENST00000260188.5_Missense_Mutation_p.Y1023C|USP28_ENST00000545540.1_Missense_Mutation_p.Y898C|USP28_ENST00000544967.1_Missense_Mutation_p.Y731C	NM_020886.2	NP_065937.1	Q96RU2	UBP28_HUMAN	ubiquitin specific peptidase 28	1055					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(4)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(12)|lung(24)|ovary(1)|prostate(5)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	59		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		ACATAGGTCATAGGGAGAATT	0.473000													67	76					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	84028117	84028117	+	Silent	SNP	C	C	A	rs45482499		TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:84028117C>A	ENST00000280241.8	-	1	71	c.72G>T	c.(70-72)gcG>gcT	p.A24A	DLG2_ENST00000398301.2_Silent_p.A24A|DLG2_ENST00000398309.2_Intron|DLG2_ENST00000543673.1_Intron|DLG2_ENST00000376104.2_Intron|DLG2_ENST00000532653.1_Intron|DLG2_ENST00000524982.1_Intron	NM_001206769.1	NP_001193698.1	Q15700	DLG2_HUMAN	discs, large homolog 2 (Drosophila)	0						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding			breast(1)|central_nervous_system(1)|endometrium(8)|kidney(3)|large_intestine(11)|lung(35)|ovary(3)|pancreas(2)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	71		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCAGGGTGGGCGCACTCCTGA	0.597000													106	157					9.16818e-52	1.17387e-51	1	1	0
AKR1C2	1646	broad.mit.edu	37	10	5042613	5042613	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr10:5042613G>A	ENST00000455190.1	-	4	434	c.409C>T	c.(409-411)Cat>Tat	p.H137Y	AKR1C2_ENST00000380753.4_Intron|AKR1C2_ENST00000407674.1_Intron|AKR1C2_ENST00000421196.3_Intron	NM_001135241.2	NP_001128713.1	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	0					digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			breast(1)|large_intestine(5)|lung(3)|skin(1)	10					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	TAGGAGTTATGTTTAGGGCTC	0.363000													9	26					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	21556011	21556011	+	Silent	SNP	C	C	T	rs147459765	byFrequency	TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:21556011C>T	ENST00000298925.5	+	17	1974	c.1821C>T	c.(1819-1821)agC>agT	p.S607S	NELL1_ENST00000529218.1_3'UTR|NELL1_ENST00000532434.1_Intron|NELL1_ENST00000325319.5_Silent_p.S522S|NELL1_ENST00000357134.5_Silent_p.S579S			Q92832	NELL1_HUMAN	NEL-like 1 (chicken)	579	EGF-like 6; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			NS(1)|breast(3)|endometrium(5)|kidney(3)|large_intestine(15)|lung(36)|ovary(2)|prostate(3)|skin(1)|urinary_tract(1)	70						AGTGCAGAAGCGGTTTCCATG	0.527000													46	73					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107449790	107449790	+	Silent	SNP	T	T	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:107449790T>A	ENST00000334504.7	-	9	800	c.567A>T	c.(565-567)ggA>ggT	p.G189G	COL4A6_ENST00000545689.1_Silent_p.G189G|COL4A6_ENST00000538570.1_Silent_p.G189G|COL4A6_ENST00000394872.2_Silent_p.G186G|COL4A6_ENST00000372216.4_Silent_p.G190G	NM_033641.2	NP_378667.1	Q14031	CO4A6_HUMAN	collagen, type IV, alpha 6	190	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			breast(2)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(20)|lung(41)|ovary(7)|prostate(1)|skin(1)|stomach(1)|urinary_tract(2)	92						CTCCAGGAAATCCGGGTGCTC	0.438000									Alport syndrome with Diffuse Leiomyomatosis				17	79					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1263956	1263956	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:1263956C>A	ENST00000447027.1	+	31	5913	c.5855C>A	c.(5854-5856)aCc>aAc	p.T1952N	RP11-532E4.2_ENST00000532061.2_RNA|MUC5B_ENST00000529681.1_Missense_Mutation_p.T1949N			Q9HC84	MUC5B_HUMAN	mucin 5B, oligomeric mucus/gel-forming	1949	11 X approximate tandem repeats, Ser/Thr- rich.|7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding			cervix(2)|endometrium(36)|kidney(9)|lung(89)|urinary_tract(1)	137		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCCACAGTCACCAGCTCCAAA	0.637000													20	207					1.33834e-09	1.49067e-09	1	1	0
SLC24A4	123041	broad.mit.edu	37	14	92922825	92922825	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:92922825C>T	ENST00000532405.1	+	12	1354	c.1128C>T	c.(1126-1128)aaC>aaT	p.N376N	SLC24A4_ENST00000298877.1_Silent_p.N359N|SLC24A4_ENST00000556739.1_3'UTR|SLC24A4_ENST00000351924.5_Silent_p.N340N|SLC24A4_ENST00000531433.1_Silent_p.N357N|SLC24A4_ENST00000393265.2_Silent_p.N312N			Q8NFF2	NCKX4_HUMAN	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	376						integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(3)|endometrium(2)|kidney(2)|large_intestine(6)|lung(20)|ovary(2)|skin(1)	36		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		ACATTGAGAACGGGAATGTTC	0.597000											OREG0022876	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	50					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107669625	107669625	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:107669625T>C	ENST00000388781.3	-	33	5092	c.5009A>G	c.(5008-5010)aAa>aGa	p.K1670R	LAMB4_ENST00000388780.3_Missense_Mutation_p.K1670R|LAMB4_ENST00000205386.4_Missense_Mutation_p.K1670R|LAMB4_ENST00000483484.1_5'UTR	NM_007356.2	NP_031382.2	A4D0S4	LAMB4_HUMAN	laminin, beta 4	1670	Domain I.				cell adhesion	basement membrane				NS(1)|breast(5)|endometrium(8)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(22)|lung(40)|ovary(4)|prostate(5)|skin(4)	97						ATATTGTTTTTTCAGCTCAAC	0.343000													21	126					0	0	1	0	0
ARID4A	5926	broad.mit.edu	37	14	58817876	58817876	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:58817876A>G	ENST00000355431.3	+	16	1863	c.1490A>G	c.(1489-1491)gAt>gGt	p.D497G	ARID4A_ENST00000431317.2_Missense_Mutation_p.D497G|ARID4A_ENST00000395168.3_Missense_Mutation_p.D497G|ARID4A_ENST00000348476.3_Missense_Mutation_p.D497G	NM_002892.3	NP_002883.3	P29374	ARI4A_HUMAN	AT rich interactive domain 4A (RBP1-like)	497					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			NS(1)|breast(2)|central_nervous_system(1)|cervix(4)|endometrium(8)|kidney(2)|large_intestine(14)|lung(19)|ovary(3)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	60						AAAGATAATGATACAGAAAAT	0.333000													21	60					0	0	1	0	0
PHOX2B	8929	broad.mit.edu	37	4	41750617	41750617	+	Missense_Mutation	SNP	A	A	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr4:41750617A>C	ENST00000226382.2	-	1	370	c.11T>G	c.(10-12)aTg>aGg	p.M4R	RP11-227F19.1_ENST00000508038.1_RNA	NM_003924.3	NP_003915.2	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	4					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|central_nervous_system(1)|endometrium(2)|large_intestine(5)|lung(11)|ovary(2)|skin(1)|urinary_tract(1)	30						AGAATATTCCATTTTATACAT	0.478000			"""Mis, F"""		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma, Familial Clustering of;Congenital Central Hypoventilation Syndrome				16	35					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26881432	26881432	+	Missense_Mutation	SNP	C	C	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:26881432C>G	ENST00000231021.4	-	12	2355	c.2183G>C	c.(2182-2184)aGt>aCt	p.S728T		NM_016279.3	NP_057363.3	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 (T1-cadherin)	728					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(6)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(25)|lung(80)|ovary(5)|prostate(4)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	137						TGGAGGTGCACTTGGGTCTGC	0.413000													60	114					0	0	1	0	0
CROCCP2	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418	by1000genomes	TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:16946407T>G	ENST00000412962.1	-	0	1112																											AGCAATCTCCTCACTCAGCTG	0.672000													3	24					0	0	1	0	0
CHN1	1123	broad.mit.edu	37	2	175673737	175673737	+	Missense_Mutation	SNP	T	T	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:175673737T>G	ENST00000409900.3	-	11	1311	c.998A>C	c.(997-999)tAt>tCt	p.Y333S	CHN1_ENST00000295497.7_Missense_Mutation_p.Y208S|CHN1_ENST00000409597.1_Missense_Mutation_p.Y149S|CHN1_ENST00000488080.1_5'UTR|CHN1_ENST00000409156.3_Missense_Mutation_p.Y307S	NM_001822.5	NP_001813.1	P15882	CHIN_HUMAN	chimerin 1	333	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			NS(1)|breast(1)|kidney(1)|large_intestine(3)|lung(7)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	18			OV - Ovarian serous cystadenocarcinoma(117;0.226)			GATATCTTCATACATGTTCAC	0.338000			T	TAF15	extraskeletal myxoid chondrosarcoma								20	154					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886371	123886371	+	Silent	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:123886371G>T	ENST00000320891.4	+	1	90	c.90G>T	c.(88-90)ctG>ctT	p.L30L		NM_001004462.1	NP_001004462.1	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G, member 4	30					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(8)|lung(19)|ovary(1)|prostate(1)|skin(4)|stomach(6)|upper_aerodigestive_tract(1)	48		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GAATCTTCCTGGTGGTTTACG	0.572000													13	38					4.72057e-08	5.17375e-08	1	1	0
FAM180A	389558	broad.mit.edu	37	7	135418804	135418804	+	Missense_Mutation	SNP	G	G	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:135418804G>C	ENST00000338588.3	-	3	706	c.441C>G	c.(439-441)atC>atG	p.I147M	FAM180A_ENST00000415751.1_Missense_Mutation_p.I147M	NM_205855.3	NP_995327.1	Q6UWF9	F180A_HUMAN	family with sequence similarity 180, member A	147						extracellular region				endometrium(1)|kidney(2)|large_intestine(2)|lung(6)|ovary(2)|pancreas(1)	14						ACTGCGCCCAGATGTCCTTCT	0.607000													11	42					0	0	1	0	0
TGIF1	7050	broad.mit.edu	37	18	3457732	3457732	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr18:3457732G>A	ENST00000472042.1	+	2	1537	c.553G>A	c.(553-555)Gcc>Acc	p.A185T	TGIF1_ENST00000407501.2_Missense_Mutation_p.A205T|TGIF1_ENST00000345133.5_Missense_Mutation_p.A185T|TGIF1_ENST00000548489.2_Missense_Mutation_p.A219T|TGIF1_ENST00000400167.2_Missense_Mutation_p.A185T|TGIF1_ENST00000551541.1_Missense_Mutation_p.A185T|TGIF1_ENST00000405385.3_Missense_Mutation_p.A185T|TGIF1_ENST00000343820.5_Missense_Mutation_p.A205T|TGIF1_ENST00000330513.5_Missense_Mutation_p.A334T|TGIF1_ENST00000401449.1_Missense_Mutation_p.A185T			Q15583	TGIF1_HUMAN	TGFB-induced factor homeobox 1	334					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			cervix(1)|endometrium(3)|large_intestine(4)|lung(2)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	13	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				GCAGATAGCGGCCAAAAACTT	0.483000													4	55					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117677962	117677962	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:117677962C>A	ENST00000368508.3	-	25	4169	c.3971G>T	c.(3970-3972)aGg>aTg	p.R1324M	GOPC_ENST00000467125.1_Intron|ROS1_ENST00000368507.3_Missense_Mutation_p.R1319M	NM_002944.2	NP_002935.2	P08922	ROS_HUMAN	c-ros oncogene 1 , receptor tyrosine kinase	1324					transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity		TPM3_ENST00000368530/ROS1(4)|LRIG3/ROS1(2)|CD74_ENST00000009530/ROS1(32)|SLC34A2/ROS1(14)|EZR/ROS1(4)|GOPC/ROS1(14)|SDC4/ROS1(7)	NS(2)|breast(7)|central_nervous_system(5)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(28)|lung(56)|ovary(8)|prostate(5)|skin(19)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(3)	162		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACATTGATTCCTTTTGTTTTG	0.383000			T	"""GOPC, SDC4, SLC34A2, EZR, LRIG3"""	"""glioblastoma, NSCLC"""								26	71					3.73988e-18	4.57468e-18	1	1	0
NOS1AP	9722	broad.mit.edu	37	1	162335326	162335326	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:162335326G>A	ENST00000493151.1	+	1	2554	c.187G>A	c.(187-189)Gag>Aag	p.E63K	RP11-565P22.6_ENST00000431696.1_Missense_Mutation_p.E44K|NOS1AP_ENST00000361897.5_Missense_Mutation_p.E358K|NOS1AP_ENST00000530878.1_Missense_Mutation_p.E353K	NM_001126060.1	NP_001119532.2	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor protein	358	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			NS(1)|breast(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(7)|lung(12)|skin(1)|upper_aerodigestive_tract(2)	32	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GCAGGTGCAAGAGCTGGAACT	0.592000													25	38					0	0	1	0	0
ADPRH	141	broad.mit.edu	37	3	119306398	119306398	+	Silent	SNP	C	C	T	rs148728137		TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr3:119306398C>T	ENST00000478399.1	+	4	2152	c.747C>T	c.(745-747)ttC>ttT	p.F249F	ADPRH_ENST00000357003.3_Silent_p.F249F|ADPRH_ENST00000478927.1_Silent_p.F249F|ADPRH_ENST00000471850.1_3'UTR|ADPRH_ENST00000465513.1_Silent_p.F249F			P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	249					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			breast(1)|kidney(1)|lung(10)|ovary(1)	13		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		CTGAGTCTTTCGGTGTGAAGG	0.507000													5	119					0	0	1	0	0
HGS	9146	broad.mit.edu	37	17	79652675	79652675	+	Silent	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:79652675G>A	ENST00000329138.4	+	2	213	c.78G>A	c.(76-78)gaG>gaA	p.E26E		NM_004712.4	NP_004703.1	O14964	HGS_HUMAN	hepatocyte growth factor-regulated tyrosine kinase substrate	26	VHS.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of JAK-STAT cascade|regulation of protein catabolic process	cytosol|early endosome membrane|multivesicular body membrane	metal ion binding|protein domain specific binding			endometrium(2)|kidney(3)|lung(4)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	12	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)			CAGATTGGGAGTCCATTTTGC	0.597000													36	79					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10934967	10934967	+	Missense_Mutation	SNP	G	G	C	rs148448130	byFrequency	TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr21:10934967G>C	ENST00000298232.7	-	14	1139	c.772C>G	c.(772-774)Cga>Gga	p.R258G	TPTE_ENST00000361285.4_Missense_Mutation_p.R276G|TPTE_ENST00000342420.5_Missense_Mutation_p.R238G|TPTE_ENST00000415664.2_5'UTR	NM_199259.2	NP_954868.1	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	276	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R276R(1)|p.R258R(1)		NS(1)|breast(1)|central_nervous_system(2)|cervix(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(19)|lung(76)|ovary(2)|prostate(2)|skin(8)|urinary_tract(1)	130			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TAGTGGTTTCGGTGTTTCTTA	0.358000													25	267					0	0	1	0	0
SIDT2	51092	broad.mit.edu	37	11	117060985	117060985	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:117060985C>T	ENST00000324225.4	+	17	2128	c.1597C>T	c.(1597-1599)Cgc>Tgc	p.R533C	SIDT2_ENST00000431081.2_Missense_Mutation_p.R530C	NM_001040455.1	NP_001035545.1	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2	533						integral to membrane|lysosomal membrane				NS(1)|breast(2)|endometrium(4)|kidney(1)|large_intestine(9)|lung(11)|ovary(1)|prostate(4)|skin(1)|upper_aerodigestive_tract(2)	36	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		GGCCCTGCTGCGCAATGACCT	0.602000													23	90					0	0	1	0	0
LRR1	122769	broad.mit.edu	37	14	50074659	50074659	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:50074659G>T	ENST00000298288.6	+	3	1148	c.824G>T	c.(823-825)cGc>cTc	p.R275L	LRR1_ENST00000318317.4_Intron	NM_152329.3	NP_689542.2	Q96L50	LLR1_HUMAN	leucine rich repeat protein 1	275										kidney(2)|large_intestine(1)|lung(5)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11						ATAAACCTTCGCTTTTTGTCA	0.343000													21	70					1.55795e-14	1.85599e-14	1	1	0
KBTBD13	390594	broad.mit.edu	37	15	65370387	65370387	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr15:65370387C>A	ENST00000432196.2	+	1	1234	c.1234C>A	c.(1234-1236)Ctg>Atg	p.L412M		NM_001101362.2	NP_001094832.1	C9JR72	KBTBD_HUMAN	kelch repeat and BTB (POZ) domain containing 13	412						cytoplasm				lung(1)|prostate(1)|skin(1)	3						CATGTTCACGCTGCTCTACGC	0.667000													7	27					8.12818e-05	8.50047e-05	1	1	0
ETV3	2117	broad.mit.edu	37	1	157105334	157105334	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:157105334C>T	ENST00000368192.4	-	3	277	c.213G>A	c.(211-213)gaG>gaA	p.E71E	ETV3_ENST00000326786.4_Silent_p.E71E|ETV3_ENST00000460850.1_5'UTR	NM_001145312.1	NP_001138784.1	P41162	ETV3_HUMAN	ets variant 3	71							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(2)|prostate(2)	9	Hepatocellular(266;0.158)	Prostate(1639;0.174)				GGCGGGCCACCTCATCTGGAT	0.547000													13	40					0	0	1	0	0
LMBRD1	55788	broad.mit.edu	37	6	70386387	70386387	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:70386387C>A	ENST00000370577.3	-	15	1693	c.1464G>T	c.(1462-1464)tgG>tgT	p.W488C	LMBRD1_ENST00000370570.1_Missense_Mutation_p.W415C	NM_018368.3	NP_060838.3	Q9NUN5	LMBD1_HUMAN	LMBR1 domain containing 1	488					interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(4)|large_intestine(7)|lung(11)|ovary(2)|upper_aerodigestive_tract(1)	31						CACTGAAGAACCAGAACTTGT	0.383000													21	35					2.21704e-12	2.53112e-12	1	1	0
KIF2B	84643	broad.mit.edu	37	17	51901844	51901844	+	Missense_Mutation	SNP	G	G	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:51901844G>C	ENST00000268919.4	+	1	1606	c.1450G>C	c.(1450-1452)Gct>Cct	p.A484P		NM_032559.4	NP_115948.4	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	484					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			NS(1)|breast(2)|endometrium(7)|kidney(2)|large_intestine(15)|lung(58)|ovary(5)|prostate(4)|skin(7)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	104						ATGTATTCTGGCTTTGGGTCA	0.507000													27	34					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28499654	28499654	+	Missense_Mutation	SNP	A	A	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:28499654A>C	ENST00000412168.2	+	3	430	c.341A>C	c.(340-342)gAg>gCg	p.E114A	GPX5_ENST00000442674.2_3'UTR|GPX5_ENST00000469384.1_Intron	NM_001509.2	NP_001500.1	O75715	GPX5_HUMAN	glutathione peroxidase 5 (epididymal androgen-related protein)	114					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			endometrium(2)|large_intestine(4)|lung(7)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	16					Glutathione(DB00143)	GATAACAAAGAGATTCTTCCT	0.488000													39	237					0	0	1	0	0
KAT6B	23522	broad.mit.edu	37	10	76602906	76602906	+	Silent	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr10:76602906A>G	ENST00000287239.4	+	3	780	c.291A>G	c.(289-291)ggA>ggG	p.G97G	KAT6B_ENST00000372724.1_Silent_p.G97G|KAT6B_ENST00000372725.1_Silent_p.G97G|KAT6B_ENST00000372711.1_Silent_p.G97G|KAT6B_ENST00000372714.1_Silent_p.G97G	NM_001256468.1|NM_012330.3	NP_001243397.1|NP_036462.2	Q8WYB5	MYST4_HUMAN	K(lysine) acetyltransferase 6B	97					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding										GGTCTAGAGGATCATGTAATG	0.473000													80	86					0	0	1	0	0
MAGOH	4116	broad.mit.edu	37	1	53692748	53692748	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:53692748A>G	ENST00000371470.3	-	5	571	c.410T>C	c.(409-411)aTt>aCt	p.I137T	MAGOH_ENST00000371466.4_Missense_Mutation_p.I100T	NM_002370.3	NP_002361.1	P61326	MGN_HUMAN	mago-nashi homolog, proliferation-associated (Drosophila)	137					mRNA 3'-end processing|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|exon-exon junction complex|nuclear speck	protein binding|RNA binding	p.I137T(1)		haematopoietic_and_lymphoid_tissue(1)|lung(4)|urinary_tract(1)	6						GTGTAATCCAATAAGACTGAA	0.378000													3	69					0	0	1	0	0
OR10G9	219870	broad.mit.edu	37	11	123893809	123893809	+	Silent	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:123893809G>T	ENST00000375024.1	+	1	90	c.90G>T	c.(88-90)ctG>ctT	p.L30L		NM_001001953.1	NP_001001953.1	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G, member 9	30					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(33)|prostate(2)|skin(4)|stomach(8)|urinary_tract(1)	61		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GAATCTTCCTGGTGGTTTACG	0.577000													7	268					1.5842e-08	1.75029e-08	1	1	0
C10orf10	11067	broad.mit.edu	37	10	45473232	45473232	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr10:45473232G>A	ENST00000298295.3	-	2	464	c.247C>T	c.(247-249)Cga>Tga	p.R83*	RASSF4_ENST00000334940.6_Intron|RASSF4_ENST00000374417.2_Intron|RASSF4_ENST00000472561.1_Intron|C10orf10_ENST00000496638.1_Intron|RASSF4_ENST00000340258.4_Intron	NM_007021.3	NP_008952.1	Q9NTK1	DEPP_HUMAN	chromosome 10 open reading frame 10	83						mitochondrion				lung(1)	1						GTGATGTCTCGCAGGGACACA	0.667000													21	29					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89630514	89630514	+	Missense_Mutation	SNP	G	G	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:89630514G>C	ENST00000294671.2	-	3	356	c.218C>G	c.(217-219)tCt>tGt	p.S73C		NM_207398.2	NP_997281.2	Q8N8V2	GBP7_HUMAN	guanylate binding protein 7	73						integral to membrane	GTP binding|GTPase activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|large_intestine(9)|lung(5)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	27		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		TTTGGTTTCAGACTTCACTGT	0.522000													15	80					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42223994	42223994	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr19:42223994G>T	ENST00000221992.6	+	7	1752	c.1638G>T	c.(1636-1638)agG>agT	p.R546S	CEACAM5_ENST00000405816.1_Missense_Mutation_p.R546S|CEACAM5_ENST00000398599.4_Missense_Mutation_p.R545S|CEA_ENST00000598976.1_Intron	NM_004363.2	NP_004354.2	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion molecule 5	546	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				breast(1)|endometrium(3)|kidney(5)|large_intestine(4)|lung(10)|ovary(2)|skin(7)|stomach(1)|urinary_tract(1)	34				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TCAGTCCCAGGCTGCAGCTGT	0.517000													44	171					3.4345e-17	4.12742e-17	1	1	0
PRSS33	260429	broad.mit.edu	37	16	2834670	2834670	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr16:2834670C>T	ENST00000293851.5	-	6	977	c.818G>A	c.(817-819)tGg>tAg	p.W273*	PRSS33_ENST00000570702.1_Nonsense_Mutation_p.W273*|PRSS33_ENST00000576886.1_3'UTR	NM_152891.2	NP_690851.2	Q8NF86	PRS33_HUMAN	protease, serine, 33	273	Peptidase S1.				proteolysis		serine-type endopeptidase activity			prostate(1)	1						AGCCTGAATCCAGGGGCTATA	0.637000													9	9					0	0	1	0	0
SERPINH1	871	broad.mit.edu	37	11	75277940	75277940	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:75277940C>T	ENST00000524558.1	+	2	1981	c.546C>T	c.(544-546)gaC>gaT	p.D182D	SERPINH1_ENST00000530284.1_Silent_p.D182D|SERPINH1_ENST00000358171.3_Silent_p.D182D|SERPINH1_ENST00000533603.1_Silent_p.D182D			P50454	SERPH_HUMAN	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	182					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			endometrium(4)|large_intestine(3)|liver(1)|lung(4)|ovary(2)|stomach(1)	15	Ovarian(111;0.11)					AGACCACCGACGGCAAGCTGC	0.647000													40	43					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228509168	228509168	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:228509168G>A	ENST00000570156.2	+	66	17571	c.17497G>A	c.(17497-17499)Gct>Act	p.A5833T	OBSCN_ENST00000366709.4_Missense_Mutation_p.A1995T|OBSCN_ENST00000422127.1_Missense_Mutation_p.A4876T|OBSCN_ENST00000366707.4_Missense_Mutation_p.A2510T|OBSCN_ENST00000284548.11_Missense_Mutation_p.A4876T	NM_001271223.2	NP_001258152.2	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	4876	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			NS(2)|breast(7)|central_nervous_system(5)|cervix(2)|endometrium(30)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(37)|lung(89)|ovary(8)|pancreas(3)|prostate(13)|skin(6)|stomach(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	223		Prostate(94;0.0405)				GGACAAGGCAGCTGTGAAGAT	0.592000													8	11					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228558449	228558449	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:228558449C>T	ENST00000570156.2	+	104	23181	c.23107C>T	c.(23107-23109)Cgc>Tgc	p.R7703C	OBSCN_ENST00000422127.1_Missense_Mutation_p.R6746C|OBSCN_ENST00000366707.4_Missense_Mutation_p.R4380C	NM_001271223.2	NP_001258152.2	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	6746	Protein kinase 2.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			NS(2)|breast(7)|central_nervous_system(5)|cervix(2)|endometrium(30)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(37)|lung(89)|ovary(8)|pancreas(3)|prostate(13)|skin(6)|stomach(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	223		Prostate(94;0.0405)				GGCCCGAAGTCGCTGGCAGGT	0.637000													13	113					0	0	1	0	0
MRPL33	9553	broad.mit.edu	37	2	28002301	28002301	+	Splice_Site	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:28002301G>T	ENST00000296102.3	+	4	211	c.148_splice	c.e4-1	p.V50_splice	MRPL33_ENST00000379666.3_Splice_Site_p.E15_splice|AC110084.1_ENST00000601759.1_Intron|MRPL33_ENST00000483992.1_3'UTR	NM_004891.3	NP_004882.1	O75394	RM33_HUMAN	mitochondrial ribosomal protein L33	50					translation	mitochondrion|ribosome	structural constituent of ribosome			breast(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(172;0.155)					CCTCCATAGTGAAACAAAGAG	0.358000													15	139					3.45872e-05	3.64496e-05	1	1	0
HERC2	8924	broad.mit.edu	37	15	28515878	28515878	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr15:28515878C>T	ENST00000261609.7	-	10	1328	c.1220G>A	c.(1219-1221)tGt>tAt	p.C407Y		NM_004667.5	NP_004658.3	O95714	HERC2_HUMAN	HECT and RLD domain containing E3 ubiquitin protein ligase 2	407					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(3)|central_nervous_system(3)|cervix(3)|endometrium(20)|kidney(11)|large_intestine(33)|lung(95)|ovary(7)|prostate(8)|skin(7)|upper_aerodigestive_tract(8)|urinary_tract(4)	204		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CGGAGGCATACAGGGCGTAGC	0.512000													4	70					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834536	101834536	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:101834536C>T	ENST00000506729.1	-	1	184	c.13G>A	c.(13-15)Gtc>Atc	p.V5I	SLCO6A1_ENST00000379810.1_Missense_Mutation_p.V5I|SLCO6A1_ENST00000379807.3_Missense_Mutation_p.V5I|SLCO6A1_ENST00000389019.3_Missense_Mutation_p.V5I|SLCO6A1_ENST00000513675.1_Missense_Mutation_p.V5I			Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family, member 6A1	5						integral to membrane|plasma membrane	transporter activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(17)|lung(22)|ovary(3)|prostate(4)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	60		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TGCCGGGCGACGCCTACGAAC	0.701000													64	100					0	0	1	0	0
IFT81	28981	broad.mit.edu	37	12	110600833	110600833	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:110600833G>T	ENST00000242591.5	+	11	1657	c.1151G>T	c.(1150-1152)cGt>cTt	p.R384L	IFT81_ENST00000552912.1_Missense_Mutation_p.R384L|IFT81_ENST00000549009.1_3'UTR|IFT81_ENST00000361948.4_Missense_Mutation_p.R384L	NM_014055.3	NP_054774.2	Q8WYA0	IFT81_HUMAN	intraflagellar transport 81 homolog (Chlamydomonas)	384					cell differentiation|multicellular organismal development|spermatogenesis	intraflagellar transport particle B|microtubule-based flagellum				endometrium(1)|large_intestine(2)|lung(5)|ovary(1)|stomach(1)	10						AATCAGACCCGTGAATTTGAT	0.418000													37	69					2.59497e-14	3.06475e-14	1	1	0
GABPB2	126626	broad.mit.edu	37	1	151090449	151090449	+	Missense_Mutation	SNP	A	A	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:151090449A>T	ENST00000368918.3	+	9	1395	c.1064A>T	c.(1063-1065)gAg>gTg	p.E355V	GABPB2_ENST00000467551.1_3'UTR|GABPB2_ENST00000368916.1_Missense_Mutation_p.E317V|GABPB2_ENST00000368917.1_Missense_Mutation_p.E317V	NM_144618.2	NP_653219.1	Q8TAK5	GABP2_HUMAN	GA binding protein transcription factor, beta subunit 2	355					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding			breast(1)|endometrium(2)|large_intestine(3)|liver(2)|lung(7)	15				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		AATGAAAGAGAGCTACTACAG	0.468000													20	75					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197094227	197094227	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:197094227T>C	ENST00000367409.4	-	11	3287	c.3031A>G	c.(3031-3033)Att>Gtt	p.I1011V	ASPM_ENST00000367408.1_Missense_Mutation_p.I261V|ASPM_ENST00000294732.7_Missense_Mutation_p.I1011V	NM_018136.4	NP_060606.3	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle) homolog, microcephaly associated (Drosophila)	1011	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			breast(6)|central_nervous_system(2)|cervix(2)|endometrium(10)|kidney(9)|large_intestine(28)|liver(1)|lung(87)|ovary(5)|pancreas(2)|prostate(6)|skin(4)|urinary_tract(3)	165						TGAAGAACAATGTCAACATTG	0.393000													26	71					0	0	1	0	0
MROH2B	133558	broad.mit.edu	37	5	41052690	41052690	+	Splice_Site	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:41052690C>T	ENST00000399564.4	-	12	1558		c.e12-1		MROH2B_ENST00000506092.2_Intron	NM_173489.4	NP_775760.3			maestro heat-like repeat family member 2B																		AATTTCTTACCTAGGGTAAGA	0.353000													14	23					0	0	1	0	0
TAF1	6872	broad.mit.edu	37	X	70607209	70607209	+	Silent	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:70607209G>A	ENST00000449580.1	+	15	2373	c.2322G>A	c.(2320-2322)cgG>cgA	p.R774R	TAF1_ENST00000373790.4_Silent_p.R774R|TAF1_ENST00000276072.3_Silent_p.R795R|TAF1_ENST00000423759.1_Silent_p.R795R			P21675	TAF1_HUMAN	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa	774					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			breast(13)|central_nervous_system(6)|cervix(1)|endometrium(25)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(16)|lung(34)|ovary(9)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(3)	124	Renal(35;0.156)	all_lung(315;0.000321)				ACTATATTCGGGAATTAGTGG	0.418000													28	185					0	0	1	0	0
VEGFB	7423	broad.mit.edu	37	11	64004683	64004683	+	Silent	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:64004683G>T	ENST00000309422.2	+	5	695	c.399G>T	c.(397-399)gtG>gtT	p.V133V	VEGFB_ENST00000426086.2_Silent_p.V133V	NM_001243733.1|NM_003377.4	NP_001230662.1|NP_003368.1	P49765	VEGFB_HUMAN	vascular endothelial growth factor B	133					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding			endometrium(2)|large_intestine(2)|prostate(1)|stomach(1)	6						ACAGTGCTGTGAAGCCAGACA	0.488000													35	120					1.04594e-18	1.29093e-18	1	1	0
NPBWR2	2832	broad.mit.edu	37	20	62737418	62737418	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr20:62737418C>T	ENST00000369768.1	-	1	1106	c.767G>A	c.(766-768)cGg>cAg	p.R256Q		NM_005286.2	NP_005277.2	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	256						plasma membrane	opioid receptor activity|protein binding	p.R256L(1)		haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(12)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					GGTCACCTTCCGCCTGGCCTT	0.687000													6	17					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604205	179604205	+	Silent	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:179604205A>G	ENST00000589042.1	-	48	13979	c.13755T>C	c.(13753-13755)acT>acC	p.T4585T	TTN-AS1_ENST00000590773.1_RNA|TTN_ENST00000359218.5_Silent_p.T4347T|TTN_ENST00000591111.1_Silent_p.T4268T|TTN_ENST00000342175.6_Silent_p.T4414T|TTN-AS1_ENST00000582847.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Silent_p.T4222T|TTN_ENST00000342992.6_Intron	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	4268	Ig-like 26.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACCTCCTCAGTACCACTTT	0.453000													16	122					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29608146	29608146	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr13:29608146G>A	ENST00000431530.3	+	2	2418	c.2360G>A	c.(2359-2361)cGt>cAt	p.R787H		NM_001033602.2	NP_001028774.2	Q5JR59	MTUS2_HUMAN	microtubule associated tumor suppressor candidate 2	777	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity			NS(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(3)|prostate(1)|skin(1)	20						GCAATGTCCCGTTTACCATCT	0.512000													7	33					0	0	1	0	0
ASNSD1	54529	broad.mit.edu	37	2	190530956	190530956	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:190530956A>G	ENST00000260952.4	+	4	511	c.98A>G	c.(97-99)aAt>aGt	p.N33S	ASNSD1_ENST00000607829.1_3'UTR|ASNSD1_ENST00000607535.1_3'UTR|ASNSD1_ENST00000607690.1_3'UTR|ASNSD1_ENST00000607062.1_Intron	NM_019048.2	NP_061921.1	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	33	Glutamine amidotransferase type-2.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(7)|ovary(2)|prostate(1)|skin(3)	25			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			CGGGGACCCAATAGTAGTAAA	0.383000													138	140					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73830430	73830430	+	Splice_Site	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:73830430C>T	ENST00000264448.6	+	21	12469	c.12359_splice	c.e21+1	p.R4120_splice	ALMS1_ENST00000409009.1_Splice_Site_p.R4078_splice|ALMS1_ENST00000464408.2_3'UTR	NM_015120.4	NP_055935.4	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	4120					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				breast(4)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(31)|lung(68)|ovary(4)|pancreas(4)|prostate(3)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	147						GAGGTCCAAACGGTAAGACCA	0.448000													26	108					0	0	1	0	0
C4orf40	401137	broad.mit.edu	37	4	71024190	71024190	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr4:71024190C>A	ENST00000344526.5	+	3	410	c.221C>A	c.(220-222)tCg>tAg	p.S74*	C4orf40_ENST00000502441.2_Intron|C4orf40_ENST00000502294.1_Nonsense_Mutation_p.S74*	NM_214711.3	NP_999876.2	Q6MZM9	CD040_HUMAN	chromosome 4 open reading frame 40	74						extracellular region				breast(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12						GGGTTACCTTCGTATCCCTGG	0.473000													31	160					4.15321e-07	4.51579e-07	1	1	0
FRMPD4	9758	broad.mit.edu	37	X	12735636	12735636	+	Silent	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:12735636G>T	ENST00000380682.1	+	16	3197	c.2691G>T	c.(2689-2691)cgG>cgT	p.R897R		NM_014728.3	NP_055543.2	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	897					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			breast(1)|central_nervous_system(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(1)|ovary(3)|pancreas(1)|skin(3)	22						CCATCTTGCGGGCTTATAGTC	0.438000													30	102					9.17885e-22	1.15367e-21	1	1	0
SPTBN2	6712	broad.mit.edu	37	11	66460751	66460751	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:66460751G>A	ENST00000533211.1	-	24	5091	c.4760C>T	c.(4759-4761)gCc>gTc	p.A1587V	SPTBN2_ENST00000529997.1_Missense_Mutation_p.A1587V|SPTBN2_ENST00000309996.2_Missense_Mutation_p.A1587V			O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1587					actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			autonomic_ganglia(1)|breast(1)|central_nervous_system(4)|cervix(1)|endometrium(10)|kidney(5)|large_intestine(15)|liver(1)|lung(22)|ovary(2)|pancreas(1)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	74						GGCTCGCAGGGCATCCTCCAG	0.632000													4	111					0	0	1	0	0
PIP	5304	broad.mit.edu	37	7	142836630	142836630	+	Silent	SNP	C	C	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:142836630C>G	ENST00000291009.3	+	4	376	c.336C>G	c.(334-336)gcC>gcG	p.A112A		NM_002652.2	NP_002643.1	P12273	PIP_HUMAN	prolactin-induced protein	112						extracellular region	actin binding	p.A112A(1)		NS(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(7)|ovary(1)|skin(1)	18	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		AAATTGCAGCCGTCGTTGATG	0.463000													24	181					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133749	91133749	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:91133749G>A	ENST00000373094.1	+	2	3355	c.2510G>A	c.(2509-2511)cGc>cAc	p.R837H	PCDH11X_ENST00000395337.2_Missense_Mutation_p.R837H|PCDH11X_ENST00000373088.1_Missense_Mutation_p.R837H|PCDH11X_ENST00000504220.1_Missense_Mutation_p.R837H|PCDH11X_ENST00000298274.8_Missense_Mutation_p.R837H|PCDH11X_ENST00000373097.1_Missense_Mutation_p.R837H|PCDH11X_ENST00000406881.1_Missense_Mutation_p.R837H|PCDH11X_ENST00000361724.1_Missense_Mutation_p.R837H|PCDH11X_ENST00000361655.2_Missense_Mutation_p.R837H	NM_032968.3	NP_116750.1	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked	837					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|biliary_tract(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(30)|liver(4)|lung(92)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	159						GTAAGATGTCGCCAGGCACCA	0.448000													19	115					0	0	1	0	0
MAML2	84441	broad.mit.edu	37	11	95826425	95826425	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:95826425A>G	ENST00000524717.1	-	2	2054	c.770T>C	c.(769-771)cTg>cCg	p.L257P		NM_032427.1	NP_115803.1	Q8IZL2	MAML2_HUMAN	mastermind-like 2 (Drosophila)	257					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC3/MAML2(26)|CRTC1/MAML2(516)	breast(2)|cervix(1)|endometrium(11)|kidney(4)|large_intestine(8)|lung(12)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	43		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CATGTTAAACAGGCCATTGCC	0.478000			T	"""MECT1, CRTC3"""	salivary gland mucoepidermoid								30	53					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126371057	126371057	+	Silent	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr4:126371057C>A	ENST00000394329.3	+	9	8899	c.8886C>A	c.(8884-8886)tcC>tcA	p.S2962S	FAT4_ENST00000335110.5_Silent_p.S1260S	NM_024582.4	NP_078858.4	Q6V0I7	FAT4_HUMAN	FAT atypical cadherin 4	2962	Cadherin 28.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(6)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(93)|liver(3)|lung(120)|ovary(9)|pancreas(2)|prostate(21)|skin(31)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(6)	355						GTAAACCTTCCTTAATTAGTG	0.333000													9	64					1.12685e-05	1.19673e-05	1	1	0
PKHD1L1	93035	broad.mit.edu	37	8	110478858	110478858	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr8:110478858A>G	ENST00000378402.5	+	50	8569	c.8465A>G	c.(8464-8466)cAt>cGt	p.H2822R		NM_177531.4	NP_803875.2	Q86WI1	PKHL1_HUMAN	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	2822					immune response	cytosol|extracellular space|integral to membrane	receptor activity			NS(4)|breast(13)|central_nervous_system(6)|cervix(1)|endometrium(19)|kidney(17)|large_intestine(34)|lung(122)|ovary(11)|pancreas(3)|prostate(9)|skin(3)|stomach(4)|upper_aerodigestive_tract(13)|urinary_tract(4)	263			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GACCCTTCTCATTGTACTCAG	0.438000										HNSCC(38;0.096)			5	20					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153130126	153130126	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:153130126G>T	ENST00000370060.1	-	24	3269	c.3080C>A	c.(3079-3081)gCg>gAg	p.A1027E	L1CAM_ENST00000361699.4_Missense_Mutation_p.A1027E|L1CAM_ENST00000370057.3_Missense_Mutation_p.A1027E|L1CAM_ENST00000370055.1_Missense_Mutation_p.A1022E|L1CAM_ENST00000361981.3_Missense_Mutation_p.A1022E|L1CAM_ENST00000543994.1_Missense_Mutation_p.A1029E|L1CAM_ENST00000538883.1_Missense_Mutation_p.A1029E	NM_001278116.1	NP_001265045.1	P32004	L1CAM_HUMAN	L1 cell adhesion molecule	1027	Fibronectin type-III 5.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				NS(1)|breast(4)|central_nervous_system(3)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(5)|liver(1)|lung(31)|ovary(13)|pancreas(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	81	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTTTTCACCCGCTGTGGCTGA	0.567000													33	142					1.22384e-17	1.48377e-17	1	1	0
PAPPA2	60676	broad.mit.edu	37	1	176525772	176525772	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:176525772G>A	ENST00000367662.3	+	2	1478	c.314G>A	c.(313-315)aGc>aAc	p.S105N	PAPPA2_ENST00000367661.3_Missense_Mutation_p.S105N	NM_020318.2	NP_064714.2	Q9BXP8	PAPP2_HUMAN	pappalysin 2	105					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			NS(3)|breast(3)|central_nervous_system(7)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(19)|lung(136)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|upper_aerodigestive_tract(8)|urinary_tract(1)	226						AATGCTGTGAGCCTTGTTCCC	0.567000													23	175					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28499613	28499613	+	Silent	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:28499613C>A	ENST00000412168.2	+	3	389	c.300C>A	c.(298-300)ccC>ccA	p.P100P	GPX5_ENST00000442674.2_3'UTR|GPX5_ENST00000469384.1_Intron	NM_001509.2	NP_001500.1	O75715	GPX5_HUMAN	glutathione peroxidase 5 (epididymal androgen-related protein)	100					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			endometrium(2)|large_intestine(4)|lung(7)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	16					Glutathione(DB00143)	TGGGCTTTCCCTGCAACCAAT	0.468000													80	233					1.10345e-40	1.39975e-40	1	1	0
SLC6A17	388662	broad.mit.edu	37	1	110716721	110716721	+	Splice_Site	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:110716721G>A	ENST00000331565.4	+	4	1056	c.571_splice	c.e4+1	p.V191_splice		NM_001010898.2	NP_001010898.1	Q9H1V8	S6A17_HUMAN	solute carrier family 6 (neutral amino acid transporter), member 17	191					alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			breast(1)|endometrium(4)|kidney(4)|large_intestine(8)|lung(13)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	37		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		GAGCGTGGCAGGCAAGTATGG	0.547000													16	43					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32460556	32460556	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:32460556A>G	ENST00000404025.2	-	9	3184	c.2696T>C	c.(2695-2697)cTg>cCg	p.L899P	NLRC4_ENST00000360906.5_Missense_Mutation_p.L899P|NLRC4_ENST00000342905.6_Missense_Mutation_p.L234P|NLRC4_ENST00000402280.1_Missense_Mutation_p.L899P			Q9NPP4	NLRC4_HUMAN	NLR family, CARD domain containing 4	899					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(1)|ovary(3)|skin(2)|stomach(2)	16	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					ATGTTTCAACAGGCTGCTCAG	0.498000													139	67					0	0	1	0	0
DUSP22	56940	broad.mit.edu	37	6	348269	348269	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:348269C>A	ENST00000604971.1	+	3	1234	c.121C>A	c.(121-123)Cat>Aat	p.H41N	DUSP22_ENST00000419235.2_Missense_Mutation_p.H144N|DUSP22_ENST00000603453.1_Missense_Mutation_p.H41N|DUSP22_ENST00000605315.1_Missense_Mutation_p.H41N|DUSP22_ENST00000344450.5_Missense_Mutation_p.H144N|DUSP22_ENST00000605035.1_Missense_Mutation_p.H41N|DUSP22_ENST00000605863.1_Missense_Mutation_p.H41N			Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	144					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(16)|ovary(1)|skin(2)	26	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GCATGAGGTCCATCAGGTAAG	0.582000													11	80					3.07112e-06	3.31294e-06	1	1	0
ATRN	8455	broad.mit.edu	37	20	3575126	3575126	+	Splice_Site	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr20:3575126C>A	ENST00000262919.5	+	20	3391	c.3322_splice	c.e20-1	p.P1108_splice	ATRN_ENST00000446916.2_Splice_Site_p.P1108_splice	NM_139321.2	NP_647537.1	O75882	ATRN_HUMAN	attractin	1108	Laminin EGF-like 1.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			breast(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(16)|lung(22)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	59						TTCTCTGCAGCATGCAAGTGC	0.473000													3	31					0.004672	0.00470635	1	1	0
HIST1H2BO	8348	broad.mit.edu	37	6	27861564	27861564	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:27861564C>T	ENST00000303806.4	+	1	362	c.324C>T	c.(322-324)gcC>gcT	p.A108A		NM_003527.4	NP_003518.2	P23527	H2B1O_HUMAN	histone cluster 1, H2bo	108					nucleosome assembly	nucleosome|nucleus	DNA binding										GGGAGCTGGCCAAGCACGCCG	0.637000													6	91					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574		TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:7577094G>A	ENST00000420246.2	-	8	976	c.844C>T	c.(844-846)Cgg>Tgg	p.R282W	TP53_ENST00000269305.4_Missense_Mutation_p.R282W|TP53_ENST00000413465.2_Intron|TP53_ENST00000359597.4_Missense_Mutation_p.R282W|TP53_ENST00000445888.2_Missense_Mutation_p.R282W|TP53_ENST00000455263.2_Missense_Mutation_p.R282W	NM_001126114.2|NM_001276696.1	NP_001119586.1|NP_001263625.1	P04637	P53_HUMAN	tumor protein p53	282	Interaction with AXIN1 (By similarity).|Interaction with E4F1.|Interaction with HIPK1 (By similarity).		DR -> EW (in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> H (in a sporadic cancer; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> Q (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation; dbSNP:rs28934574).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R282W(401)|p.R282G(29)|p.0?(8)|p.R282fs*24(4)|p.R282R(3)|p.?(2)|p.D281fs*63(2)|p.D281_R282>EW(2)|p.A276_R283delACPGRDRR(1)|p.D281_R282insXX(1)|p.C275fs*20(1)|p.R282_E287delRRTEEE(1)|p.L265_K305del41(1)|p.D281_R282delDR(1)|p.G279fs*59(1)|p.R280fs*62(1)|p.S269fs*21(1)|p.R282fs*63(1)|p.V272_K292del21(1)|p.C275_R283delCACPGRDRR(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TCTGTGCGCCGGTCTCTCCCA	0.557000		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			9	12					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104131454	104131454	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:104131454C>T	ENST00000388887.2	+	53	5797	c.5593C>T	c.(5593-5595)Cgg>Tgg	p.R1865W		NM_017564.9	NP_060034.9	Q8WWQ8	STAB2_HUMAN	stabilin 2	1865	FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			NS(4)|breast(7)|central_nervous_system(1)|cervix(1)|endometrium(15)|kidney(11)|large_intestine(26)|lung(77)|ovary(10)|pancreas(1)|prostate(5)|skin(14)|stomach(2)	174						AATTGTGCAGCGGGAGCTCTT	0.483000													15	81					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67062073	67062073	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr8:67062073T>C	ENST00000315962.4	+	5	1170	c.797T>C	c.(796-798)aTt>aCt	p.I266T	TRIM55_ENST00000353317.5_Missense_Mutation_p.I266T|TRIM55_ENST00000276573.7_Missense_Mutation_p.I266T|TRIM55_ENST00000350034.4_Intron	NM_184085.1	NP_908973.1	Q9BYV6	TRI55_HUMAN	tripartite motif containing 55	266						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(13)|ovary(1)|prostate(2)|skin(6)|upper_aerodigestive_tract(2)	39		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GAGTCAGGAATTCAGTTTATG	0.418000													19	95					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502685	20502685	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:20502685G>A	ENST00000315693.2	-	1	234	c.233C>T	c.(232-234)aCc>aTc	p.T78I		NM_001004714.1	NP_001004714.1	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K, member 13	78					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(3)|kidney(1)|large_intestine(2)|lung(11)|ovary(3)|skin(4)	24	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CATCTTAGGGGTAGCAAAAGA	0.458000													20	52					0	0	1	0	0
ITM2A	9452	broad.mit.edu	37	X	78616623	78616623	+	Missense_Mutation	SNP	T	T	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:78616623T>G	ENST00000434584.2	-	5	959	c.623A>C	c.(622-624)aAc>aCc	p.N208T	ITM2A_ENST00000373298.2_Missense_Mutation_p.N252T|ITM2A_ENST00000469541.1_5'UTR	NM_001171581.1	NP_001165052.1	O43736	ITM2A_HUMAN	integral membrane protein 2A	252	BRICHOS.					integral to membrane	protein binding			breast(1)|kidney(1)|large_intestine(1)|lung(10)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)	18						AATAAATTCGTTGGGGAAGTG	0.353000													6	61					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35989810	35989810	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:35989810C>T	ENST00000297866.5	+	12	2144	c.2078C>T	c.(2077-2079)gCa>gTa	p.A693V		NM_152632.3	NP_689845.2	Q6ZTR5	CX022_HUMAN	chromosome X open reading frame 22	693										breast(2)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(9)|lung(18)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(3)	44						CTGTCTTCAGCAGCAAATTCA	0.433000													5	33					0	0	1	0	0
ADCK3	56997	broad.mit.edu	37	1	227174271	227174271	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:227174271G>A	ENST00000366779.1	+	20	4548	c.1777G>A	c.(1777-1779)Gtc>Atc	p.V593I	ADCK3_ENST00000478406.1_3'UTR|ADCK3_ENST00000366778.1_Missense_Mutation_p.V541I|ADCK3_ENST00000366777.3_Missense_Mutation_p.V593I|ADCK3_ENST00000433743.2_Missense_Mutation_p.V267I|ADCK3_ENST00000366775.1_Missense_Mutation_p.V438I|ADCK3_ENST00000366776.1_Missense_Mutation_p.V518I|ADCK3_ENST00000458507.2_Missense_Mutation_p.V314I			Q8NI60	ADCK3_HUMAN	aarF domain containing kinase 3	593					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity			endometrium(1)|kidney(2)|large_intestine(1)|prostate(1)|skin(1)|stomach(1)|urinary_tract(2)	9						CCTGATTCCCGTCATGCTGAG	0.592000													19	48					0	0	1	0	0
NME8	51314	broad.mit.edu	37	7	37890314	37890314	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:37890314G>T	ENST00000199447.4	+	5	547	c.175G>T	c.(175-177)Gac>Tac	p.D59Y	EPDR1_ENST00000476620.1_Intron|NME8_ENST00000440017.1_Missense_Mutation_p.D59Y	NM_016616.4	NP_057700.3	Q8N427	TXND3_HUMAN	NME/NM23 family member 8	59	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity										ACTGAACGAAGACGAAATTCT	0.318000													20	131					0.000132079	0.000136051	1	1	0
TLL1	7092	broad.mit.edu	37	4	166935659	166935659	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr4:166935659C>A	ENST00000061240.2	+	8	1636	c.989C>A	c.(988-990)aCc>aAc	p.T330N	TLL1_ENST00000507499.1_Missense_Mutation_p.T330N|TLL1_ENST00000513213.1_Missense_Mutation_p.T330N	NM_012464.4	NP_036596.3	O43897	TLL1_HUMAN	tolloid-like 1	330	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(7)|kidney(4)|large_intestine(21)|lung(26)|ovary(2)|prostate(5)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	77	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GGTCAGCGAACCCGTCTAAGC	0.463000													5	213					0.000602214	0.000615697	1	1	0
CDH3	1001	broad.mit.edu	37	16	68710361	68710361	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr16:68710361C>T	ENST00000264012.4	+	3	778	c.234C>T	c.(232-234)ggC>ggT	p.G78G	CDH3_ENST00000581171.1_Silent_p.G23G|CDH3_ENST00000429102.2_Silent_p.G78G	NM_001793.4	NP_001784.2	P22223	CADH3_HUMAN	cadherin 3, type 1, P-cadherin (placental)	78					adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(2)		NS(1)|breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(4)|ovary(3)|skin(1)|urinary_tract(1)	25		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		TGCGGAATGGCGAGACAGTCC	0.517000													11	45					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40651059	40651059	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:40651059G>A	ENST00000298910.7	+	12	1356	c.1298G>A	c.(1297-1299)aGa>aAa	p.R433K	LRRK2_ENST00000343742.2_Missense_Mutation_p.R433K	NM_198578.3	NP_940980.3	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	433					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			NS(3)|biliary_tract(1)|breast(6)|central_nervous_system(2)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(23)|large_intestine(31)|lung(55)|ovary(15)|pancreas(2)|prostate(4)|skin(4)|stomach(9)|upper_aerodigestive_tract(7)|urinary_tract(2)	181	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GTTAATTTCAGAAAAATACTG	0.274000													33	64					0	0	1	0	0
ZNF107	51427	broad.mit.edu	37	7	64167752	64167752	+	Missense_Mutation	SNP	A	A	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:64167752A>T	ENST00000395391.1	+	4	2445	c.1070A>T	c.(1069-1071)aAa>aTa	p.K357I	ZNF107_ENST00000344930.3_Missense_Mutation_p.K357I|ZNF107_ENST00000423627.1_Missense_Mutation_p.K357I			Q9UII5	ZN107_HUMAN	zinc finger protein 107	357					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(18)|ovary(1)|stomach(1)	37		Lung NSC(55;0.00948)|all_lung(88;0.0249)				AAACCCTACAAATGTAAAGAA	0.348000													23	41					0	0	1	0	0
MRPL2	51069	broad.mit.edu	37	6	43023876	43023876	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:43023876C>T	ENST00000388752.3	-	4	887	c.463G>A	c.(463-465)Gaa>Aaa	p.E155K	MRPL2_ENST00000489623.1_Intron|MRPL2_ENST00000230413.5_Missense_Mutation_p.E155K	NM_015950.3	NP_057034.2	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2	155					translation	mitochondrion|ribosome	structural constituent of ribosome			breast(1)|endometrium(2)|kidney(3)|large_intestine(1)|lung(2)	9		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		TGCATGTTTTCTGTGGCGATG	0.547000													12	94					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132198300	132198300	+	Splice_Site	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:132198300C>T	ENST00000360971.2	+	18	1912	c.1893_splice	c.e18+1	p.S631_splice		NM_006208.2	NP_006199.2	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase 1	631					3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			autonomic_ganglia(1)|breast(2)|endometrium(1)|kidney(3)|large_intestine(8)|lung(22)|ovary(2)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)	46	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	TGTAACCCTTCGGTAAGTATC	0.428000													5	23					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105407146	105407146	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:105407146T>C	ENST00000333244.5	-	7	14761	c.14642A>G	c.(14641-14643)gAg>gGg	p.E4881G	AHNAK2_ENST00000557457.1_Intron	NM_138420.2	NP_612429.2	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4881						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TAGGTCTCCCTCAGGAACTGC	0.502000													10	41					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56281637	56281637	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:56281637C>A	ENST00000225371.5	+	12	2111	c.2001C>A	c.(1999-2001)agC>agA	p.S667R		NM_000502.4	NP_000493.1	P11678	PERE_HUMAN	eosinophil peroxidase	667					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			breast(2)|endometrium(9)|kidney(1)|large_intestine(9)|liver(2)|lung(20)|ovary(2)|prostate(2)|upper_aerodigestive_tract(1)	48						AGGCCCTGAGCAGAATTTCCT	0.502000													17	109					9.7654e-05	0.000101353	1	1	0
PAPPA2	60676	broad.mit.edu	37	1	176525773	176525773	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:176525773C>T	ENST00000367662.3	+	2	1479	c.315C>T	c.(313-315)agC>agT	p.S105S	PAPPA2_ENST00000367661.3_Silent_p.S105S	NM_020318.2	NP_064714.2	Q9BXP8	PAPP2_HUMAN	pappalysin 2	105					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			NS(3)|breast(3)|central_nervous_system(7)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(19)|lung(136)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|upper_aerodigestive_tract(8)|urinary_tract(1)	226						ATGCTGTGAGCCTTGTTCCCC	0.567000													23	176					0	0	1	0	0
SFI1	9814	broad.mit.edu	37	22	32007791	32007791	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr22:32007791C>A	ENST00000432498.1	+	23	2755	c.2362C>A	c.(2362-2364)Ctc>Atc	p.L788I	SFI1_ENST00000540643.1_Missense_Mutation_p.L764I|SFI1_ENST00000400288.2_Missense_Mutation_p.L819I|SFI1_ENST00000400289.1_Missense_Mutation_p.L737I|SFI1_ENST00000443326.1_Missense_Mutation_p.L737I|SFI1_ENST00000443011.1_Missense_Mutation_p.L666I|SFI1_ENST00000414585.1_Missense_Mutation_p.L666I	NM_014775.3	NP_055590.2	A8K8P3	SFI1_HUMAN	Sfi1 homolog, spindle assembly associated (yeast)	819					G2/M transition of mitotic cell cycle	centriole|cytosol				NS(2)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|large_intestine(7)|liver(1)|lung(11)|ovary(1)|prostate(3)|upper_aerodigestive_tract(3)	38						GGCACAGAGACTCAGCCGGAC	0.637000													4	26					0.014758	0.014758	1	1	0
HAL	3034	broad.mit.edu	37	12	96384170	96384170	+	Splice_Site	SNP	C	C	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:96384170C>G	ENST00000261208.3	-	10	1224		c.e10+1		HAL_ENST00000538703.1_Splice_Site|HAL_ENST00000541929.1_Splice_Site|HAL_ENST00000551562.1_Splice_Site	NM_002108.3	NP_002099.1	P42357	HUTH_HUMAN	histidine ammonia-lyase						biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			NS(2)|breast(1)|central_nervous_system(2)|endometrium(6)|kidney(1)|large_intestine(8)|lung(8)|ovary(2)|pancreas(1)|prostate(1)|skin(2)	34					L-Histidine(DB00117)	ACGAGTCTTACGTATTTAGCA	0.522000													30	51					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	rs146714035	by1000genomes	TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:145367739A>G	ENST00000342960.5	+	83	10370	c.10335A>G	c.(10333-10335)aaA>aaG	p.K3445K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3445								p.K3445K(4)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.413000													7	150					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7982173	7982173	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:7982173G>A	ENST00000328600.2	-	2	1147	c.986C>T	c.(985-987)aCg>aTg	p.T329M		NM_176821.3	NP_789791.1	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	329	NACHT.						ATP binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(8)|liver(1)|lung(28)|ovary(2)|pancreas(1)|prostate(2)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	58				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTTCTCATCCGTGAAATAGGA	0.507000													39	105					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100680623	100680623	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:100680623C>T	ENST00000306151.4	+	3	5990	c.5926C>T	c.(5926-5928)Cca>Tca	p.P1976S		NM_001040105.1	NP_001035194.1	Q685J3	MUC17_HUMAN	mucin 17, cell surface associated	1976	59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			NS(3)|breast(14)|central_nervous_system(2)|cervix(2)|endometrium(27)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(28)|lung(179)|ovary(19)|pancreas(1)|prostate(13)|skin(26)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(4)	343	Lung NSC(181;0.136)|all_lung(186;0.182)					TACCAGCATGCCAACCCCAGC	0.498000													6	689					0	0	1	0	0
ANKEF1	63926	broad.mit.edu	37	20	10018979	10018979	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr20:10018979C>T	ENST00000378380.3	+	2	359	c.30C>T	c.(28-30)aaC>aaT	p.N10N	SNAP25-AS1_ENST00000603542.1_RNA|ANKEF1_ENST00000488991.1_3'UTR|SNAP25-AS1_ENST00000421143.2_RNA|ANKEF1_ENST00000378392.1_Silent_p.N10N	NM_198798.1	NP_942093.1			ankyrin repeat and EF-hand domain containing 1																		GACTTGAGAACTTACAGATCT	0.383000													6	64					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247027358	247027358	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:247027358C>T	ENST00000366508.1	-	27	3649	c.3513G>A	c.(3511-3513)caG>caA	p.Q1171Q	AHCTF1_ENST00000326225.3_Silent_p.Q1145Q|AHCTF1_ENST00000470300.1_5'UTR|AHCTF1_ENST00000391829.2_Silent_p.Q1136Q			Q8WYP5	ELYS_HUMAN	AT hook containing transcription factor 1	1136	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			NS(1)|breast(6)|cervix(3)|endometrium(8)|kidney(6)|large_intestine(12)|liver(2)|lung(21)|ovary(5)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	74	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGGAGCTTTGCTGAATAAACT	0.453000													16	64					0	0	1	0	0
TRGC2	6967	broad.mit.edu	37	7	38288928	38288928	+	RNA	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:38288928C>T	ENST00000436911.2	-	0	245																											TGTTCTTTGTCCAGTGACTCT	0.403000													61	92					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112031544	112031544	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:112031544C>A	ENST00000369716.4	-	3	693	c.560G>T	c.(559-561)tGg>tTg	p.W187L	ADORA3_ENST00000369717.4_Missense_Mutation_p.W106L	NM_020683.6	NP_065734.5	P33765	AA3R_HUMAN	adenosine A3 receptor	0					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			NS(1)|breast(2)|endometrium(1)|large_intestine(2)|lung(3)|ovary(2)|skin(1)	12		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GCCTCGGCACCAGTATTTGGG	0.517000													14	77					9.31168e-06	9.96641e-06	1	1	0
GPLD1	2822	broad.mit.edu	37	6	24467490	24467490	+	Silent	SNP	G	G	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:24467490G>C	ENST00000230036.1	-	8	668	c.558C>G	c.(556-558)gtC>gtG	p.V186V	GPLD1_ENST00000474784.1_5'UTR	NM_001503.3	NP_001494.2	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific phospholipase D1	186						extracellular region	glycosylphosphatidylinositol phospholipase D activity			breast(3)|endometrium(5)|kidney(1)|large_intestine(11)|lung(8)|ovary(2)|prostate(1)|urinary_tract(1)	32						GTAGATCTTTGACTGGCACAT	0.368000													20	56					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62287002	62287002	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:62287002T>C	ENST00000378024.4	-	5	15161	c.14887A>G	c.(14887-14889)Att>Gtt	p.I4963V	AHNAK_ENST00000257247.7_Intron|AHNAK_ENST00000530124.1_Intron	NM_001620.1	NP_001611.1	Q09666	AHNK_HUMAN	AHNAK nucleoprotein	4963					nervous system development	nucleus	protein binding			NS(3)|autonomic_ganglia(1)|breast(10)|central_nervous_system(5)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(33)|large_intestine(40)|liver(1)|lung(108)|ovary(13)|pancreas(4)|prostate(5)|skin(16)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	268		Melanoma(852;0.155)				TCGATGTTAATATCTGGGCTG	0.443000													43	136					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12422808	12422808	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:12422808A>G	ENST00000358136.3	+	51	10304	c.10174A>G	c.(10174-10176)Att>Gtt	p.I3392V	VPS13D_ENST00000356315.4_Missense_Mutation_p.I3367V	NM_015378.2	NP_056193.2	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13 homolog D (S. cerevisiae)	3391					protein localization					NS(1)|breast(6)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(13)|large_intestine(28)|lung(44)|ovary(5)|pancreas(1)|prostate(8)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(4)	130	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGGTCGATACATTGATACCTG	0.413000													35	185					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100353650	100353650	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:100353650A>G	ENST00000294724.4	+	21	3276	c.2798A>G	c.(2797-2799)tAt>tGt	p.Y933C	AGL_ENST00000370163.3_Missense_Mutation_p.Y933C|AGL_ENST00000361915.3_Missense_Mutation_p.Y933C|AGL_ENST00000361302.3_Missense_Mutation_p.Y917C|AGL_ENST00000370165.3_Missense_Mutation_p.Y933C|AGL_ENST00000370161.2_Missense_Mutation_p.Y917C|AGL_ENST00000361522.4_Missense_Mutation_p.Y916C	NM_000028.2	NP_000019.2	P35573	GDE_HUMAN	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	933					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(6)|large_intestine(9)|lung(35)|ovary(1)|prostate(4)|skin(3)|urinary_tract(1)	69		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GCCCTTAAATATGCAGGTCTT	0.418000													18	41					0	0	1	0	0
ZFP62	643836	broad.mit.edu	37	5	180277793	180277793	+	Silent	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:180277793G>A	ENST00000359141.6	-	3	841	c.522C>T	c.(520-522)ttC>ttT	p.F174F	ZFP62_ENST00000502412.1_Silent_p.F234F|ZFP62_ENST00000506377.1_Intron|ZFP62_ENST00000512132.1_Silent_p.F201F	NM_152283.4	NP_689496.4	Q8NB50	ZFP62_HUMAN	ZFP62 zinc finger protein	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			NS(1)|endometrium(2)|pancreas(1)	4	all_cancers(89;4.01e-05)|all_epithelial(37;4.69e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00469)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCTATAATTGAAGGATTTTC	0.468000													3	19					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303172	151303172	+	Missense_Mutation	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:151303172C>A	ENST00000370323.4	-	4	1237	c.921G>T	c.(919-921)agG>agT	p.R307S	MAGEA10_ENST00000244096.3_Missense_Mutation_p.R307S|RP11-1007I13.4_ENST00000509345.2_RNA	NM_001251828.1|NM_021048.4	NP_001238757.1|NP_066386.2	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	307	MAGE.									endometrium(2)|kidney(2)|large_intestine(4)|lung(11)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	23	Acute lymphoblastic leukemia(192;6.56e-05)					GACTCATCTTCCTAATTTCAG	0.498000													32	191					9.65021e-13	1.11099e-12	1	1	0
ABCC11	85320	broad.mit.edu	37	16	48210931	48210931	+	Missense_Mutation	SNP	T	T	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr16:48210931T>A	ENST00000394747.1	-	24	3791	c.3442A>T	c.(3442-3444)Atg>Ttg	p.M1148L	ABCC11_ENST00000356608.2_Missense_Mutation_p.M1148L|ABCC11_ENST00000394748.1_Missense_Mutation_p.M1148L|ABCC11_ENST00000353782.5_Missense_Mutation_p.M1148L|ABCC11_ENST00000565329.1_5'UTR	NM_033151.3	NP_149163.2	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP), member 11	1148	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(3)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(12)|lung(42)|ovary(3)|prostate(2)|skin(5)|urinary_tract(2)	83		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CTGTATTTCATGTGATAATCC	0.532000													44	16					0	0	1	0	0
ASH2L	9070	broad.mit.edu	37	8	37978466	37978466	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr8:37978466G>T	ENST00000343823.6	+	10	1273	c.964G>T	c.(964-966)Gct>Tct	p.A322S	ASH2L_ENST00000545394.1_Missense_Mutation_p.A183S|ASH2L_ENST00000521652.1_Missense_Mutation_p.A228S|ASH2L_ENST00000428278.2_Missense_Mutation_p.A228S|ASH2L_ENST00000250635.7_Missense_Mutation_p.A228S	NM_004674.4	NP_004665.2	Q9UBL3	ASH2L_HUMAN	ash2 (absent, small, or homeotic)-like (Drosophila)	322					hemopoiesis|histone H3-K4 methylation|positive regulation of cell proliferation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription from RNA polymerase II promoter	Set1C/COMPASS complex	metal ion binding|protein binding|transcription regulatory region DNA binding			NS(1)|endometrium(5)|kidney(2)|large_intestine(3)|lung(6)|ovary(1)|stomach(1)	19	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)				TTTGTTTTCTGCTCAGCGCCT	0.468000											OREG0018719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	44					1.50039e-11	1.69879e-11	1	1	0
HYAL1	3373	broad.mit.edu	37	3	50339652	50339652	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr3:50339652T>C	ENST00000266031.4	-	1	1351	c.736A>G	c.(736-738)Atc>Gtc	p.I246V	HYAL1_ENST00000395143.2_Missense_Mutation_p.I246V|HYAL1_ENST00000395144.2_Missense_Mutation_p.I246V|HYAL1_ENST00000447605.2_Intron|HYAL1_ENST00000457214.2_Missense_Mutation_p.I64V|HYAL1_ENST00000320295.8_Missense_Mutation_p.I246V			Q12794	HYAL1_HUMAN	hyaluronoglucosaminidase 1	246						extracellular space|lysosome	hyalurononglucosaminidase activity			cervix(1)|endometrium(2)|large_intestine(1)|lung(6)|prostate(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)	Hyaluronidase(DB00070)	GGCATGTAGATGCTGGGATAG	0.617000													16	17					0	0	1	0	0
CLIP1	6249	broad.mit.edu	37	12	122825429	122825429	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:122825429C>T	ENST00000358808.2	-	10	2443	c.2289G>A	c.(2287-2289)ttG>ttA	p.L763L	CLIP1_ENST00000302528.7_Silent_p.L763L|CLIP1_ENST00000545889.1_Intron|CLIP1_ENST00000540338.1_Silent_p.L774L|CLIP1_ENST00000537178.1_Silent_p.L728L|CLIP1_ENST00000361654.4_Intron	NM_001247997.1|NM_002956.2	NP_001234926.1|NP_002947.1	P30622	CLIP1_HUMAN	CAP-GLY domain containing linker protein 1	774					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			NS(1)|breast(5)|endometrium(4)|kidney(5)|large_intestine(16)|liver(1)|lung(21)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CATCAAGATCCAAGAGCTTTT	0.408000													34	134					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93141395	93141395	+	Splice_Site	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:93141395A>G	ENST00000298050.3	+	12	1426		c.e12-1		CCDC67_ENST00000525646.1_Splice_Site	NM_181645.3	NP_857596.2	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67											endometrium(3)|kidney(1)|large_intestine(1)|lung(10)|ovary(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	22		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TTTATTCTCTAGAGTATGGAC	0.353000													7	12					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51219708	51219708	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr19:51219708T>C	ENST00000293441.1	-	2	301	c.283A>G	c.(283-285)Acc>Gcc	p.T95A	SHANK1_ENST00000359082.3_Missense_Mutation_p.T95A|SHANK1_ENST00000391814.1_Missense_Mutation_p.T95A	NM_016148.2	NP_057232.2	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	95					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			breast(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|kidney(5)|large_intestine(15)|liver(1)|lung(21)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)	64		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GTCCAGATGGTGGCATCGGGG	0.632000													6	39					0	0	1	0	0
SPATS2L	26010	broad.mit.edu	37	2	201305466	201305466	+	Silent	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:201305466C>A	ENST00000409988.3	+	8	1270	c.747C>A	c.(745-747)tcC>tcA	p.S249S	SPATS2L_ENST00000409755.3_Silent_p.S279S|SPATS2L_ENST00000409718.1_Silent_p.S249S|SPATS2L_ENST00000360760.5_Silent_p.S180S|SPATS2L_ENST00000409385.1_Silent_p.S189S|SPATS2L_ENST00000409140.3_Silent_p.S249S|SPATS2L_ENST00000358677.4_Silent_p.S249S|SPATS2L_ENST00000409151.1_Silent_p.S257S|SPATS2L_ENST00000451764.2_Silent_p.S249S	NM_001100422.1	NP_001093892.1	Q9NUQ6	SPS2L_HUMAN	spermatogenesis associated, serine-rich 2-like	249						cytoplasm|nucleolus				endometrium(1)|kidney(1)|lung(4)|ovary(2)|pancreas(1)|prostate(1)	10						TGGATAGTTCCGTGAAGAAGA	0.408000													17	24					6.49762e-13	7.54385e-13	1	1	0
PPFIBP2	8495	broad.mit.edu	37	11	7674313	7674313	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:7674313C>T	ENST00000299492.4	+	24	2883	c.2495C>T	c.(2494-2496)tCg>tTg	p.S832L	PPFIBP2_ENST00000530582.1_3'UTR|PPFIBP2_ENST00000533792.1_Missense_Mutation_p.S674L|PPFIBP2_ENST00000528883.1_Missense_Mutation_p.S720L|PPFIBP2_ENST00000530181.1_Missense_Mutation_p.S689L	NM_003621.3	NP_003612.2	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2 (liprin beta 2)	832					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			breast(8)|cervix(1)|kidney(1)|large_intestine(8)|lung(8)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	32				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		TTCGATGAATCGACGGACTAC	0.473000													31	209					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176812989	176812989	+	Splice_Site	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:176812989C>T	ENST00000324417.5	+	3	202	c.109_splice	c.e3-1	p.V37_splice	SLC34A1_ENST00000512593.1_Splice_Site_p.V37_splice	NM_003052.4	NP_003043.3	Q06495	NPT2A_HUMAN	solute carrier family 34 (type II sodium/phosphate contransporter), member 1	37					phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(5)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	24	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTCCCTAGTCCTACACAGGA	0.692000													7	46					0	0	1	0	0
ERBB3	2065	broad.mit.edu	37	12	56480395	56480395	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr12:56480395A>G	ENST00000267101.3	+	4	942	c.502A>G	c.(502-504)Agg>Ggg	p.R168G	ERBB3_ENST00000415288.2_Missense_Mutation_p.R109G|ERBB3_ENST00000450146.2_Intron	NM_001982.3	NP_001973.2	P21860	ERBB3_HUMAN	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3	168					cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			central_nervous_system(2)|lung(3)|ovary(1)|skin(1)|stomach(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			GGACATCGTGAGGGACCGAGA	0.498000													5	89					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120491110	120491110	+	Silent	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:120491110G>A	ENST00000256646.2	-	17	2898	c.2679C>T	c.(2677-2679)ggC>ggT	p.G893G		NM_024408.3	NP_077719.2	Q04721	NOTC2_HUMAN	notch 2	893	EGF-like 23; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			breast(4)|central_nervous_system(6)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(9)|kidney(9)|large_intestine(19)|liver(1)|lung(57)|ovary(4)|pancreas(1)|prostate(7)|skin(24)|stomach(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	158	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACATGTAGCTGCCCTGGGTGT	0.517000			"""N, F, Mis"""		"""marginal zone lymphoma, DLBCL"""				Alagille Syndrome		OREG0013733	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	61					0	0	1	0	0
RNF8	9025	broad.mit.edu	37	6	37342436	37342436	+	Missense_Mutation	SNP	A	A	G			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:37342436A>G	ENST00000373479.4	+	5	1272	c.1079A>G	c.(1078-1080)gAc>gGc	p.D360G	RNF8_ENST00000469731.1_Missense_Mutation_p.D360G	NM_003958.3|NM_183078.2	NP_003949.1|NP_898901.1	O76064	RNF8_HUMAN	ring finger protein 8, E3 ubiquitin protein ligase	360					cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)|urinary_tract(1)	13						AGCAAGAAGGACTTTGAAGCA	0.408000													27	55					0	0	1	0	0
GGPS1	9453	broad.mit.edu	37	1	235505557	235505557	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:235505557G>A	ENST00000282841.5	+	4	605	c.373G>A	c.(373-375)Gga>Aga	p.G125R	GGPS1_ENST00000476121.1_Missense_Mutation_p.G125R|GGPS1_ENST00000488594.1_Missense_Mutation_p.G125R|GGPS1_ENST00000391855.2_Missense_Mutation_p.G71R|GGPS1_ENST00000358966.2_Missense_Mutation_p.G125R			O95749	GGPPS_HUMAN	geranylgeranyl diphosphate synthase 1	125					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|soluble fraction	dimethylallyltranstransferase activity|farnesyltranstransferase activity|geranyltranstransferase activity|metal ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|ovary(1)	8	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;1.39e-05)			ACTCCATCAGGGACAAGGCCT	0.438000													21	55					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42223995	42223995	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr19:42223995C>T	ENST00000221992.6	+	7	1753	c.1639C>T	c.(1639-1641)Ctg>Ttg	p.L547L	CEACAM5_ENST00000405816.1_Silent_p.L547L|CEACAM5_ENST00000398599.4_Silent_p.L546L|CEA_ENST00000598976.1_Intron	NM_004363.2	NP_004354.2	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion molecule 5	547	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				breast(1)|endometrium(3)|kidney(5)|large_intestine(4)|lung(10)|ovary(2)|skin(7)|stomach(1)|urinary_tract(1)	34				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CAGTCCCAGGCTGCAGCTGTC	0.517000													44	172					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873878	91873878	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:91873878C>T	ENST00000373094.1	+	7	4828	c.3983C>T	c.(3982-3984)cCa>cTa	p.P1328L	PCDH11X_ENST00000373088.1_Missense_Mutation_p.P1291L|PCDH11X_ENST00000504220.1_3'UTR|PCDH11X_ENST00000298274.8_Missense_Mutation_p.P1291L|PCDH11X_ENST00000373097.1_Missense_Mutation_p.P1318L|PCDH11X_ENST00000406881.1_Missense_Mutation_p.P1320L|PCDH11X_ENST00000361655.2_Missense_Mutation_p.P1310L	NM_032968.3	NP_116750.1	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked	1328					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|biliary_tract(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(30)|liver(4)|lung(92)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	159						ACCTTCACTCCACGCCAACAG	0.413000													79	82					0	0	1	0	0
FSTL5	56884	broad.mit.edu	37	4	163032430	163032430	+	Missense_Mutation	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr4:163032430C>T	ENST00000306100.5	-	2	555	c.119G>A	c.(118-120)cGa>cAa	p.R40Q	FSTL5_ENST00000536695.1_Missense_Mutation_p.R40Q|FSTL5_ENST00000379164.4_Missense_Mutation_p.R40Q|FSTL5_ENST00000427802.2_Missense_Mutation_p.R40Q	NM_001128427.2|NM_020116.4	NP_001121899.1|NP_064501.2	Q8N475	FSTL5_HUMAN	follistatin-like 5	40						extracellular region	calcium ion binding	p.R40Q(1)		central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(18)|lung(43)|ovary(4)|pancreas(2)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)	91	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TACCTTATGTCGCAATCTCAT	0.393000													38	124					0	0	1	0	0
DUSP21	63904	broad.mit.edu	37	X	44703764	44703764	+	Missense_Mutation	SNP	T	T	C			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chrX:44703764T>C	ENST00000339042.4	+	1	516	c.386T>C	c.(385-387)cTg>cCg	p.L129P		NM_022076.3	NP_071359.3	Q9H596	DUS21_HUMAN	dual specificity phosphatase 21	129	Tyrosine-protein phosphatase.					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(3)|lung(8)|skin(3)	19						TCCATGTCGCTGCTGGACGCC	0.557000													12	63					0	0	1	0	0
OIT3	170392	broad.mit.edu	37	10	74690334	74690334	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr10:74690334G>A	ENST00000334011.5	+	8	1624	c.1406G>A	c.(1405-1407)cGg>cAg	p.R469Q		NM_152635.1	NP_689848.1	Q8WWZ8	OIT3_HUMAN	oncoprotein induced transcript 3	469	ZP.					nuclear envelope	calcium ion binding			autonomic_ganglia(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(9)|liver(2)|lung(14)|ovary(2)|prostate(1)|skin(2)	35	Prostate(51;0.0198)					TACACATCCCGGGATCACCTA	0.438000													39	145					0	0	1	0	0
RB1	5925	broad.mit.edu	37	13	48951141	48951141	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr13:48951141G>T	ENST00000267163.4	+	13	1441	c.1303G>T	c.(1303-1305)Gga>Tga	p.G435*		NM_000321.2	NP_000312.2	P06400	RB_HUMAN	retinoblastoma 1	435	Domain A.|Pocket; binds T and E1A.				androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.0?(15)|p.?(8)|p.G435*(1)		NS(3)|adrenal_gland(1)|bone(22)|breast(30)|central_nervous_system(48)|cervix(3)|endometrium(14)|eye(95)|gastrointestinal_tract_(site_indeterminate)(1)|haematopoietic_and_lymphoid_tissue(20)|kidney(3)|large_intestine(10)|liver(3)|lung(153)|oesophagus(1)|ovary(13)|pancreas(5)|pituitary(1)|prostate(14)|salivary_gland(2)|skin(9)|soft_tissue(9)|stomach(4)|upper_aerodigestive_tract(1)|urinary_tract(31)	496		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TAAAGCTGTGGGACAGGGTTG	0.353000		6	"""D, Mis, N, F, S"""		"""retinoblastoma, sarcoma, breast, small cell lung"""	"""retinoblastoma, sarcoma, breast, small cell lung"""			Hereditary Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			51	45					7.05377e-20	8.78515e-20	1	1	0
ANKRD36	375248	broad.mit.edu	37	2	97875549	97875549	+	Missense_Mutation	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:97875549G>A	ENST00000420699.2	+	56	3551	c.3307G>A	c.(3307-3309)Gag>Aag	p.E1103K	ANKRD36_ENST00000461153.2_Missense_Mutation_p.E1103K	NM_001164315.1	NP_001157787.1	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	1103								p.E1103K(1)|p.E933K(1)		endometrium(9)|kidney(5)|liver(1)|lung(3)|ovary(2)|prostate(2)|upper_aerodigestive_tract(1)	23						TACAAGTGACGAGAAAGATTC	0.323000													5	55					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909619	123909619	+	Silent	SNP	C	C	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr11:123909619C>A	ENST00000330487.5	-	1	98	c.90G>T	c.(88-90)ctG>ctT	p.L30L		NM_001004463.1	NP_001004463.1	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G, member 7	30					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(7)|large_intestine(6)|lung(20)|ovary(2)|prostate(2)|stomach(3)|urinary_tract(1)	47		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CGTAAACCACCAGGAAGATTC	0.572000													16	145					1.64293e-13	1.92378e-13	1	1	0
CSMD1	64478	broad.mit.edu	37	8	3063085	3063085	+	Missense_Mutation	SNP	G	G	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr8:3063085G>T	ENST00000520002.1	-	32	5483	c.4928C>A	c.(4927-4929)cCc>cAc	p.P1643H	CSMD1_ENST00000602723.1_Missense_Mutation_p.P1643H|CSMD1_ENST00000400186.3_Missense_Mutation_p.P1643H|CSMD1_ENST00000602557.1_Missense_Mutation_p.P1643H|CSMD1_ENST00000542608.1_Missense_Mutation_p.P1642H|CSMD1_ENST00000539096.1_Missense_Mutation_p.P1642H|CSMD1_ENST00000537824.1_Missense_Mutation_p.P1642H|CSMD1_ENST00000523387.1_5'UTR			Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1	1643	CUB 10.					integral to membrane		p.P1642L(1)|p.P1371L(1)		breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTAATTATGGGGGTAGTTTGG	0.408000													6	14					1.26484e-09	1.42036e-09	1	1	0
PITX1	5307	broad.mit.edu	37	5	134364505	134364505	+	Silent	SNP	C	C	T			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr5:134364505C>T	ENST00000265340.7	-	3	1325	c.909G>A	c.(907-909)ccG>ccA	p.P303P	PITX1_ENST00000506438.1_Silent_p.P303P	NM_002653.4	NP_002644.4	P78337	PITX1_HUMAN	paired-like homeodomain 1	303						nucleolus	sequence-specific DNA binding			central_nervous_system(1)|cervix(3)|endometrium(3)|large_intestine(1)|lung(5)|ovary(1)	14			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		GGCCCGAGGCCGGGCCCTGCA	0.731000													7	16					0	0	1	0	0
RELB	5971	broad.mit.edu	37	19	45515405	45515405	+	Silent	SNP	G	G	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr19:45515405G>A	ENST00000221452.8	+	4	525	c.375G>A	c.(373-375)ccG>ccA	p.P125P	RELB_ENST00000540120.1_Silent_p.P125P|RELB_ENST00000505236.1_Silent_p.P122P	NM_006509.3	NP_006500.2	Q01201	RELB_HUMAN	v-rel avian reticuloendotheliosis viral oncogene homolog B	125	RHD.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(3)|ovary(3)|skin(1)	12		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		GCCCGCAGCCGCACCTGGTCA	0.761000													7	23					0	0	1	0	0
EIF4G3	8672	broad.mit.edu	37	1	21205835	21205836	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr1:21205835_21205836delAT	ENST00000602326.1	-	18	3035_3036	c.2452_2453delAT	c.(2452-2454)gfs	p.M818fs	EIF4G3_ENST00000536266.1_Frame_Shift_Del_p.M416fs|EIF4G3_ENST00000374935.3_Frame_Shift_Del_p.M532fs|EIF4G3_ENST00000374937.3_Frame_Shift_Del_p.M818fs|EIF4G3_ENST00000264211.8_Frame_Shift_Del_p.M812fs|EIF4G3_ENST00000537738.1_Frame_Shift_Del_p.M302fs|EIF4G3_ENST00000400422.1_Frame_Shift_Del_p.M812fs	NM_001198802.1	NP_001185731.1	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4 gamma, 3	812	MIF4G.|eIF3/EIF4A-binding (By similarity).				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(18)|lung(20)|ovary(1)|prostate(4)|skin(3)|stomach(1)|urinary_tract(3)	70		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		ACATCGACACATGTTTGCGTAA	0.441													42	156	---	---	---	---					
ANKRD44	91526	broad.mit.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr2:197943383_197943384delTG	ENST00000409153.1	-	16	1875_1876	c.1693_1694delCA	c.(1693-1695)tfs	p.H565fs	ANKRD44_ENST00000539527.1_Frame_Shift_Del_p.H493fs|ANKRD44_ENST00000328737.2_Intron|ANKRD44_ENST00000450567.1_Intron|ANKRD44_ENST00000337207.5_Intron|ANKRD44_ENST00000282272.8_Intron			Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	811							protein binding			NS(1)|endometrium(3)|kidney(2)|large_intestine(9)|lung(20)|ovary(4)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	45			OV - Ovarian serous cystadenocarcinoma(117;0.246)			ATTTGGGGTATGTGTGTGTGTG	0.411													7	28	---	---	---	---					
KLC4	89953	broad.mit.edu	37	6	43039083	43039083	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr6:43039083delC	ENST00000394056.2	+	10	1721	c.1226delC	c.(1225-1227)gcfs	p.A409fs	KLC4_ENST00000347162.5_Frame_Shift_Del_p.A409fs|KLC4_ENST00000259708.3_Frame_Shift_Del_p.A427fs|KLC4_ENST00000453940.2_Frame_Shift_Del_p.A332fs|KLC4_ENST00000394058.1_Frame_Shift_Del_p.A409fs|KLC4_ENST00000479388.1_Frame_Shift_Del_p.A409fs			Q9NSK0	KLC4_HUMAN	kinesin light chain 4	409						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			endometrium(2)|large_intestine(7)|lung(5)|ovary(1)|pancreas(1)|skin(3)|urinary_tract(4)	23			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			CTGACCCGTGCCCATGTACAG	0.517													14	75	---	---	---	---					
AC006988.1	0	broad.mit.edu	37	7	88269890	88269891	+	RNA	INS	-	-	T	rs113056340		TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr7:88269890_88269891insT	ENST00000390184.1	+	0	56_57																											AGAAGGAGCACTTTTTTTTTTT	0.317													2	4	---	---	---	---					
SPAG1	6674	broad.mit.edu	37	8	101178178	101178179	+	Frame_Shift_Ins	INS	-	-	A			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr8:101178178_101178179insA	ENST00000388798.2	+	3	468_469	c.277_278insA	c.(277-279)aaafs	p.K93fs	SPAG1_ENST00000520643.1_Frame_Shift_Ins_p.K93fs|SPAG1_ENST00000520508.1_Frame_Shift_Ins_p.K93fs|SPAG1_ENST00000251809.3_Frame_Shift_Ins_p.K93fs	NM_003114.4	NP_003105.2	Q07617	SPAG1_HUMAN	sperm associated antigen 1	93					single fertilization	cytoplasm	GTP binding|hydrolase activity			central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(6)|lung(10)|ovary(2)|pancreas(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	30	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TGAAGAATGGGAAAAAATTGAT	0.361													11	88	---	---	---	---					
BTBD6	90135	broad.mit.edu	37	14	105716856	105716856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr14:105716856delC	ENST00000463376.2	+	3	1621	c.1080delC	c.(1078-1080)gtfs	p.V360fs	BRF1_ENST00000327359.3_Intron|BRF1_ENST00000546474.1_Intron|BTBD6_ENST00000392554.3_Frame_Shift_Del_p.V435fs|BRF1_ENST00000440513.3_Intron|BTBD6_ENST00000536364.1_Frame_Shift_Del_p.V435fs|BTBD6_ENST00000327471.3_Frame_Shift_Del_p.V360fs|BRF1_ENST00000379937.2_Intron			Q96KE9	BTBD6_HUMAN	BTB (POZ) domain containing 6	435						cytoplasmic mRNA processing body				endometrium(1)|lung(3)	4		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.0163)|Epithelial(46;0.0391)	Epithelial(152;0.18)		CCAGTGCCGTCCTGGACGGCA	0.572													39	82	---	---	---	---					
MIR7162	102466227	broad.mit.edu	37	15	62538522	62538523	+	RNA	INS	-	-	GA	rs3055695		TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr15:62538522_62538523insGA	ENST00000570077.1	-	0	693_694																											GGGGGCTCCGGGTAGGGGTTCA	0.609													2	4	---	---	---	---					
RP11-863P13.2	0	broad.mit.edu	37	16	88226616	88226618	+	RNA	DEL	TGA	TGA	-	rs149645617	by1000genomes	TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr16:88226616_88226618delTGA	ENST00000568587.1	-	0	91																											gtgatggtggtgatggtggtggt	0.527													2	4	---	---	---	---					
KRT16P6	353194	broad.mit.edu	37	17	16723089	16723092	+	RNA	DEL	TTTG	TTTG	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:16723089_16723092delTTTG	ENST00000417510.1	-	0	871																											tttttttttttttgacagggtcta	0.490													2	4	---	---	---	---					
CTC-264K15.6	0	broad.mit.edu	37	17	62052593	62052593	+	RNA	DEL	C	C	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr17:62052593delC	ENST00000577329.1	-	0	55																											ACTGCCCTCTCCACCCTCCAC	0.572													2	4	---	---	---	---					
CTNNBL1	56259	broad.mit.edu	37	20	36361471	36361471	+	Splice_Site	DEL	T	T	-			TCGA-IQ-A6SG-01A-12D-A34J-08	TCGA-IQ-A6SG-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09d1b40f-c5c2-49e7-bc2a-8a076ba59658	7f6c4b53-f204-4f74-a112-83d89e542313	g.chr20:36361471delT	ENST00000405275.2	+	3	381		c.e3+2		CTNNBL1_ENST00000361383.6_Splice_Site			Q8WYA6	CTBL1_HUMAN	catenin, beta like 1						apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			autonomic_ganglia(1)|breast(2)|endometrium(9)|large_intestine(6)|lung(6)|ovary(3)|urinary_tract(1)	28		Myeloproliferative disorder(115;0.00878)				GAGGAAGAGGTAACGTGGCAG	0.483													16	15	---	---	---	---					
