Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27107195	27107195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ARID1A-584	NM_006015	exon20	c.C6806A	p.S2269X	TGAACTCATTGGT	.	118	47	198	0	.	27	11	16	0	0
C1orf194	127003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109649721	109649721	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C1orf194-23	NM_001122961	exon3	c.C186T	p.F62F	TAAGCGGAAGTCC	.	217	93	183	0	.	1	1	0	0	0
RFX5	5993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151314667	151314667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RFX5-91	NM_000449	exon11	c.C1846A	p.P616T	ATCATGGGGGTGT	.	94	47	129	0	.	44	20	24	0	0
ASH1L	55870	broad.mit.edu	37	1	155324299	155324299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ASH1L-234	NM_018489	exon16	c.A7178G	p.N2393S	ATCCCATTCCAAC	.	269	7	280	0	.	8	7	1	0	0
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173772191	173772191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CENPL-90	NM_001127181	exon6	c.C1011A	p.F337L	TCTATGGAAATGT	.	84	8	79	1	.	1	1	0	0	0
PRG4	10216	bcgsc.ca	37	1	186276075	186276075	+	Silent	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PRG4-91	NM_005807	exon7	c.T1224C	p.T408T	CACCACTCCCAAG	.	222	28	161	11	.	0	0	0	0	0
PIK3C2B	5287	bcgsc.ca	37	1	204412626	204412626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PIK3C2B-1310	NM_002646	exon20	c.G2967T	p.E989D	GTTAAACTCTTCT	.	190	57	262	1	.	2	2	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216017693	216017693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	USH2A-115	NM_206933	exon46	c.T9201A	p.N3067K	AGGCACATTCATT	.	77	24	75	0	.	0	0	0	0	0
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650317	232650317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SIPA1L2-95	NM_020808	exon1	c.C769T	p.R257C	AGATGCGGACAAA	.	115	44	126	0	.	1	1	0	0	0
UNC5B	219699	bcgsc.ca	37	10	73050759	73050759	+	Missense_Mutation	SNP	T	T	G	rs117156661		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	UNC5B-228	NM_170744	exon9	c.T1187G	p.V396G	TGGGGGTGGTGGT	.	333	147	675	46	T|0.999;G|0.001	0	0	0	0	0
GBF1	8729	bcgsc.ca	37	10	104120011	104120011	+	Silent	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GBF1-91	NM_001199378	exon12	c.T1251C	p.N417N	CACCAATCCACAC	.	397	76	633	7	.	16	16	0	0	0
NAV2	89797	broad.mit.edu	37	11	19954837	19954837	+	Silent	SNP	G	G	A	rs143560669		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NAV2-96	NM_001244963	exon8	c.G1116A	p.P372P	CATCCCGCAGCCC	.	430	5	435	0	G|0.999;A|0.000	2	2	0	0	0
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47745663	47745663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FNBP4-91	NM_015308	exon14	c.C2381A	p.T794K	ATTTCTGTAGCTT	.	79	30	89	0	.	13	13	0	0	0
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47745665	47745665	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FNBP4-91	NM_015308	exon14	c.T2379C	p.A793A	TTCTGTAGCTTTC	.	75	29	90	0	.	11	11	0	0	0
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48142761	48142761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PTPRJ-541	NM_001098503	exon4	c.A559G	p.T187A	TCCATCACTCCAG	.	69	20	102	0	.	15	9	6	0	0
GAB2	9846	bcgsc.ca	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GAB2-663	NM_080491	exon4	c.G1061C	p.R354P	GGGGGGCGGGGTG	.	99	46	144	1	.	2	2	0	0	0
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113103986	113103986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NCAM1-23	NM_001242607	exon15	c.G1718T	p.W573L	CTGAGTGGAGAGC	.	42	16	45	0	.	0	0	0	0	0
CADM1	23705	bcgsc.ca	37	11	115049423	115049423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CADM1-92	NM_014333	exon9	c.T1151G	p.V384G	AACACCACCACCG	.	114	38	264	8	.	36	35	0	1	0
CEP164	22897	bcgsc.ca	37	11	117280516	117280516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CEP164-69	NM_014956	exon30	c.A3931C	p.T1311P	ACCCCCACCCCCA	.	231	44	408	7	.	8	8	0	0	0
LAG3	3902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6886460	6886460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	LAG3-90	NM_002286	exon6	c.C1088G	p.S363C	CTGGATCCCTGGG	.	158	67	136	0	.	0	0	0	0	0
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11461501	11461501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PRB4-91	NM_002723	exon3	c.G416T	p.G139V	GGCTTTCCTGGAG	.	566	232	531	0	.	0	0	0	0	0
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	83290130	83290130	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMTC2-92	NM_152588	exon3	c.G1188A	p.L396L	TGTTCTGTCTTTA	.	208	96	214	0	.	32	18	14	0	0
BTG1	694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	92537939	92537939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	BTG1-683	NM_001731	exon2	c.A433G	p.S145G	TTCGGCTGTCTAC	.	116	56	117	0	.	174	90	84	0	0
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	94976205	94976205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMCC3-92	NM_020698	exon2	c.A188T	p.K63M	TTGACCTTGTGGA	.	146	62	166	0	.	11	6	5	0	0
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66031104	66031104	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	DENND4A-229	NM_001144823	exon6	c.T741C	p.N247N	TTTGCTATTTGAT	.	122	49	88	0	.	3	1	2	0	0
C15orf59	388135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74032301	74032301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C15orf59-91	NM_001039614	exon2	c.T839A	p.L280Q	TAGGGCAGAACCG	.	163	72	250	0	.	18	10	8	0	0
ACSM1	116285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20682868	20682868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ACSM1-91	NM_052956	exon4	c.C737A	p.P246H	AAGGAGGGTTGTA	.	111	36	61	0	.	45	37	8	0	0
APOBR	55911	hgsc.bcm.edu	37	16	28507273	28507273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	APOBR-90	NM_018690	exon2	c.T911C	p.I304T	GGACAATCTCAGG	.	68	5	53	1	.	0	0	0	0	0
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1633711	1633711	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	WDR81-91	NM_001163809	exon2	c.G3705A	p.K1235K	TGCCAAGCTCGGC	.	69	15	67	0	.	11	9	2	0	0
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4445915	4445915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MYBBP1A-92	NM_014520	exon21	c.A3014G	p.H1005R	ACCGGGTGCCGGG	.	189	115	137	0	.	0	0	0	0	0
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7948982	7948982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ALOX15B-227	NM_001141	exon8	c.C1178T	p.P393L	AGCTGCCCCACTG	.	78	38	45	0	.	2	2	0	0	0
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10433386	10433386	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MYH2-194	NM_017534	exon23	c.C2703T	p.A901A	GCCTTCGGCTTCC	.	254	82	152	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	471	79	301	46	.	50	7	43	0	0
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61561775	61561775	+	Silent	SNP	G	G	C	rs137910205	alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ACE-94	NM_000789	exon12	c.G1794C	p.P598P	CCAGCCGCTGCTC	.	57	27	50	1	G|1.000;A|0.000	36	10	26	0	0
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5406855	5406855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	EPB41L3-95	NM_012307	exon16	c.A2270G	p.K757R	AGCCTCTTCTCCC	.	116	49	162	0	.	43	21	22	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28660278	28660278	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	DSC2-517	NM_024422	exon10	c.T1304G	p.I435S	ACACCAATTTGCA	.	70	30	68	0	.	19	9	10	0	0
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10403449	10403449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ICAM5-153	NM_003259	exon5	c.A1123G	p.N375D	ACCGAGAACGACG	.	56	8	99	0	.	0	0	0	0	0
ZSWIM4	65249	ucsc.edu	37	19	13919690	13919690	+	Silent	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZSWIM4-90	NM_023072	exon4	c.C753A	p.A251A	GGACGCCAACTGC	.	35	4	30	0	.	2	2	0	0	0
PEG3	5178	broad.mit.edu	37	19	57326548	57326548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PEG3-164	NM_001146184	exon9	c.G3262T	p.V1088F	GAATGACAGGGTC	.	102	4	146	0	.	0	0	0	0	0
PELI1	57162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	64323347	64323347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PELI1-91	NM_020651	exon6	c.C602T	p.S201F	GGCTTGGAGTCTT	.	124	45	121	0	.	10	6	4	0	0
NCK2	8440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	106498221	106498221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NCK2-415	NM_001004720	exon3	c.A664G	p.M222V	GAGACCATGGAGG	.	178	71	198	1	.	104	60	44	0	0
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	C	T	rs2912696		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RGPD3-23	NM_001144013	exon16	c.G2316A	p.A772A	TGAATCCGCATTT	.	383	6	292	0	.	17	0	17	0	0
ZC3H6	376940	ucsc.edu	37	2	113069433	113069433	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZC3H6-93	NM_198581	exon5	c.G666A	p.P222P	CTTGCCGAAGAAA	.	37	4	28	0	.	6	6	0	0	0
CCDC108	255101	bcgsc.ca	37	2	219886565	219886565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CCDC108-94	NM_194302	exon18	c.A3067C	p.T1023P	AGAGGGTGCAGTT	.	232	72	308	3	.	0	0	0	0	0
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227872789	227872789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	COL4A4-142	NM_000092	exon47	c.T4754C	p.I1585T	GGGGGGATGGACT	.	50	17	80	2	.	7	2	5	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	RNA	SNP	G	G	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FRG1B-22	.	.	.	.	AAAATGGCTTTGT	.	218	5	238	2	.	0	0	0	0	0
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34215310	34215310	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CPNE1-91	NM_003915	exon14	c.C1143A	p.Y381X	TTGGCGGTAGGCA	.	110	49	112	1	.	55	48	7	0	0
ROMO1	140823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34288799	34288799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ROMO1-90	NM_080748	exon3	c.A211G	p.M71V	ACATTCATGGCCA	.	127	49	105	0	.	215	105	110	0	0
TAF4	6874	hgsc.bcm.edu	37	20	60639811	60639811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TAF4-93	NM_003185	exon1	c.G1056T	p.Q352H	CGCCGCCTGCACC	.	9	6	1	1	.	0	0	0	0	0
SON	6651	hgsc.bcm.edu	37	21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SON-97	NM_138927	exon12	c.G7235A	p.G2412E	GAAATGGAGCCCT	.	58	10	32	2	.	0	0	0	0	0
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12957106	12957106	+	Silent	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	IQSEC1-91	NM_014869	exon7	c.G2190A	p.V730V	TTTCCCCACAATG	.	94	22	134	0	.	0	0	0	0	0
GOLGA4	2803	broad.mit.edu;bcgsc.ca	37	3	37369907	37369907	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GOLGA4-93	NM_001172713	exon16	c.A6006G	p.K2002K	ACTCAGACAGGAG	.	180	8	157	0	.	0	0	0	0	0
PLXNB1	5364	bcgsc.ca	37	3	48451952	48451952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PLXNB1-293	NM_001130082	exon30	c.T5432G	p.V1811G	CCGGCCACCCCAG	.	43	19	85	2	.	89	88	1	0	0
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	187009418	187009418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MASP1-94	NM_139125	exon1	c.G3C	p.M1I	GTACCTCATTTTC	.	211	46	178	0	.	0	0	0	0	0
UGDH	7358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39515753	39515753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	UGDH-156	NM_003359	exon3	c.T214C	p.S72P	TGGTAGAAAAAAA	.	98	40	81	0	.	25	11	14	0	0
NAF1	92345	broad.mit.edu	37	4	164050124	164050124	+	Silent	SNP	T	T	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NAF1-70	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	20	9	24	0	.	3	3	0	0	0
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186380257	186380257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CCDC110-90	NM_152775	exon6	c.G1484T	p.S495I	GTTTTACTTAACT	.	31	12	20	0	.	5	5	0	0	0
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186545386	186545386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SORBS2-91	NM_001270771	exon16	c.C1485A	p.F495L	GTCCGGGAAGCTA	.	70	30	96	0	.	0	0	0	0	0
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	7886796	7886796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MTRR-91	NM_024010	exon8	c.A1207G	p.I403V	CTTGAAATCCGAG	.	79	5	91	0	.	28	27	1	0	0
P4HA2	8974	broad.mit.edu	37	5	131546092	131546092	+	Silent	SNP	G	G	T	rs147510145		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	P4HA2-68	NM_001017974	exon6	c.C594A	p.A198A	CTCCCCGGCATCA	.	264	5	245	0	A|0.000;G|1.000	53	53	0	0	0
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	82461655	82461655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FAM46A-90	NM_017633	exon2	c.G204T	p.W68C	TTGCTCCCAGTTC	.	124	61	197	0	.	3	1	2	0	0
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90411386	90411386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MDN1-100	NM_014611	exon55	c.A8318T	p.E2773V	TGAACTTCTTTGT	.	52	26	52	0	.	0	0	0	0	0
ECHDC1	55862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	127611395	127611395	+	Silent	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ECHDC1-90	NM_001139510	exon6	c.A543G	p.R181R	GACGAATCTGATC	.	93	37	80	0	.	46	28	18	0	0
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159401839	159401839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RSPH3-92	NM_031924	exon6	c.G1252A	p.D418N	CACTATCCCTGAG	.	44	18	60	0	.	27	11	16	0	0
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6639468	6639468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C7orf26-91	NM_024067	exon4	c.A589T	p.I197F	GACCTCATTCCAC	.	218	126	193	0	.	0	0	0	0	0
HDAC9	9734	broad.mit.edu;bcgsc.ca	37	7	18625059	18625059	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HDAC9-227	NM_001204144	exon5	c.C304T	p.Q102X	CAAATCCAGAAGC	.	100	6	76	0	.	10	9	1	0	0
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35707133	35707133	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HERPUD2-93	NM_022373	exon5	c.T405C	p.G135G	GGAAGAACCCACA	.	179	111	133	0	.	38	9	29	0	0
ZAN	7455	bcgsc.ca	37	7	100350046	100350046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZAN-142	.	.	.	.	AAAAACTCACCAT	.	227	22	136	6	.	0	0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100681919	100681919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MUC17-95	NM_001040105	exon3	c.C7222T	p.P2408S	ACCATGCCGGTGG	.	841	6	585	0	.	0	0	0	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733204	52733204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PCMTD1-68	NM_052937	exon6	c.G781C	p.D261H	TCTCATCATTTAT	.	197	9	177	0	.	29	29	0	0	0
NSMAF	8439	broad.mit.edu	37	8	59498243	59498243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NSMAF-91	NM_001144772	exon30	c.C2720A	p.A907E	ATTTTTGCTCCAA	.	125	5	95	0	.	15	15	0	0	0
WWP1	11059	ucsc.edu	37	8	87392964	87392964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	WWP1-659	NM_007013	exon4	c.C80A	p.A27D	CTAGTGCCAAACT	.	40	4	25	0	.	0	0	0	0	0
TAF1L	138474	bcgsc.ca	37	9	32635283	32635283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TAF1L-870	NM_153809	exon1	c.T295G	p.W99G	TAATCCACCCTTC	.	229	62	312	3	.	0	0	0	0	0
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35560975	35560975	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RUSC2-91	NM_014806	exon11	c.G4230A	p.L1410L	CTGGCTGAGCCTG	.	52	24	76	0	.	32	18	14	0	0
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128117063	128117063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GAPVD1-93	NM_015635	exon23	c.G3781A	p.V1261I	ACCACTGTCTGTG	.	177	70	159	0	.	20	11	9	0	0
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140508526	140508526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ARRDC1-90	NM_152285	exon5	c.C478A	p.L160M	TACAAGCTGGTGA	.	183	61	225	0	.	82	44	38	0	0
SUPT20HL1	100130302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	24381817	24381817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	.	NM_001136234	exon1	c.G940T	p.G314W	GCTAAAGGGTATC	.	181	119	185	0	.	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618845	57618845	+	Missense_Mutation	SNP	G	G	A	rs199513692		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZXDB-130	NM_007157	exon1	c.G364A	p.E122K	GAGGCCGAGGAGG	.	18	6	9	2	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182120	120182120	+	Silent	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GLUD2-131	NM_012084	exon1	c.C582T	p.T194T	CTATACCGAAAAT	.	92	2	112	0	.	2	2	0	0	0
CDHR5	53841	broad.mit.edu	37	11	618807	618807	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CDHR5-90	NM_021924	exon13	c.1752delC	p.P584fs	CATACTGGGGGGC	.	254	7	289	0	.	0	0	0	0	0
PUS3	83480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	125765906	125765922	+	Frame_Shift_Del	DEL	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PUS3-91	NM_031307	exon2	c.258_274del	p.86_92del	.	.	194	60	236	0	.	0	0	0	0	0
KRR1	11103	hgsc.bcm.edu	37	12	75900389	75900560	+	Frame_Shift_Del	DEL	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	KRR1-92	NM_007043	exon4	c.394_394del	p.132_132del	.	.	117	20	83	0	.	0	0	0	0	0
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	72432229	72432229	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SENP8-660	NM_001166340	exon2	c.265delG	p.A89fs	.	.	114	53	122	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3924472	3924472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZZEF1-93	NM_015113	exon45	c.7355delA	p.K2452fs	.	.	375	106	235	0	.	0	0	0	0	0
TRIM37	4591	broad.mit.edu;bcgsc.ca	37	17	57078973	57078974	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TRIM37-660	NM_015294	exon23	c.2797_2798del	p.933_933del	GGGGGCTGTGTCA	.	188	20	120	0	.	0	0	0	0	0
SMCHD1	23347	broad.mit.edu	37	18	2666935	2666935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SMCHD1-46	NM_015295	exon3	c.329delC	p.A110fs	TGACAGCTACGAA	.	21	8	24	0	.	0	0	0	0	0
CABLES1	91768	broad.mit.edu	37	18	20716015	20716023	+	In_Frame_Del	DEL	GGCGCCGGC	GGCGCCGGC	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	GGCGCCGGC	GGCGCCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CABLES1-522	NM_001100619	exon1	c.289_297del	p.97_99del	AAGCCGGGCGCCG	.	9	7	2	0	.	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31323288	31323288	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HLA-B-90	NM_005514	exon4	c.701delC	p.P234fs	.	.	162	72	225	0	.	0	0	0	0	0
EPHB4	2050	broad.mit.edu;bcgsc.ca	37	7	100404084	100404104	+	In_Frame_Del	DEL	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	EPHB4-1446	NM_004444	exon14	c.2422_2442del	p.808_814del	AAATGACATCACC	.	159	14	137	0	.	0	0	0	0	0
TRIM14	9830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	100862406	100862406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TRIM14-226	NM_033219	exon3	c.344delT	p.F115fs	.	.	111	52	106	0	.	0	0	0	0	0
AMY1C	278	hgsc.bcm.edu	37	1	104231690	104231691	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	.	NM_001008219	exon10	c.1236_1237insT	p.F412fs	.	.	357	54	315	0	.	0	0	0	0	0
TMCO3	55002	bcgsc.ca	37	13	114188424	114188425	+	In_Frame_Ins	INS	-	-	TTTTTTTTTTTT	rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMCO3-90	NM_017905	exon9	c.1408_1409insTTTTTTTTTTTT	p.V470delinsVFFFF	GCGGCGGTTTTTC	.	123	9	117	0	.	0	0	0	0	0
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71768532	71768533	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	AP1G1-92	NM_001030007	exon23	c.2356_2357insT	p.K786_V787delinsX	.	.	657	369	376	0	.	0	0	0	0	0
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29297095	29297096	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C2orf71-91	NM_001029883	exon1	c.33_34insT	p.V11fs	.	.	93	48	119	0	.	0	0	0	0	0
RAD18	56852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	8955405	8955406	+	Splice_Site	INS	-	-	TG	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RAD18-663	NM_020165	exon9	c.890-1->CA	.	.	.	23	13	21	0	.	0	0	0	0	0
TMEM184A	202915	broad.mit.edu	37	7	1586662	1586663	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMEM184A-90	NM_001097620	exon9	c.1168_1169insGGC	p.S390delinsGS	CGCCGCTGGGGTG	.	85	11	57	0	.	0	0	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95886864	95886865	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ABCC4		exon4	c.A530C	p.K177T	CTTACCTTCCGAT	.	47.0	20.0	74.0	0.0	.	0	0	0	0	0
