Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM51	55092	broad.mit.edu	37	1	15541888	15541888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TMEM51-90	NM_018022	exon2	c.A305C	p.H102P	TCCAGCACCCGAC	.	47	8	43	8	.	137	133	3	0	1
CD53	963	broad.mit.edu	37	1	111440473	111440473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CD53-90	NM_000560	exon7	c.C547A	p.L183M	AATTTCCTGTATA	.	82	4	72	0	.	37	37	0	0	0
CD1C	911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158261919	158261919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CD1C-94	NM_001765	exon3	c.G374A	p.G125E	ATTCTGGAAAGAG	.	192	89	154	0	.	1	1	0	0	0
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182898789	182898789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SHCBP1L-91	NM_030933	exon6	c.C1175A	p.T392N	ATTTCAGTAGTCA	.	38	16	21	0	.	0	0	0	0	0
TMEM9	252839	ucsc.edu;bcgsc.ca	37	1	201104800	201104800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TMEM9-90	NM_016456	exon6	c.G543A	p.M181I	GCTGAGCATCTTG	.	377	166	214	2	.	981	500	480	0	1
NVL	4931	bcgsc.ca	37	1	224468833	224468833	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NVL-92	NM_002533	exon16	c.C1954T	p.L652L	TGTTTAGTAATTC	.	58	18	38	1	.	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IBA57-90	NM_001010867	exon2	c.C390A	p.S130R	TGACAGCTCGGTG	.	117	12	24	0	.	4	4	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17169853	17169853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CUBN-166	NM_001081	exon3	c.G323T	p.S108I	ATTTGACTAGATA	.	39	19	58	0	.	0	0	0	0	0
SLC25A28	81894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101370968	101370968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC25A28-90	NM_031212	exon4	c.A733T	p.T245S	CATAGGTCATGAA	.	137	44	185	0	.	42	24	18	0	0
VAX1	11023	hgsc.bcm.edu	37	10	118893699	118893699	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	VAX1-92	NM_001112704	exon3	c.G825A	p.L275L	CACCGGCAGGCTG	.	15	8	7	0	.	0	0	0	0	0
PDZD8	118987	broad.mit.edu	37	10	119044855	119044855	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PDZD8-90	NM_173791	exon5	c.C1389T	p.G463G	CAACTGGCCAAAG	.	110	3	126	0	.	45	45	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092950	1092950	+	Missense_Mutation	SNP	C	C	T	rs199605832		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MUC2-90	NM_002457	exon30	c.C4769T	p.T1590I	CCACCACTACGGT	.	183	6	143	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093346	1093346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MUC2-90	NM_002457	exon30	c.C5165T	p.T1722I	CCCCGACACCCAT	.	162	12	106	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	153	12	53	0	.	0	0	0	0	0
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2798240	2798240	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KCNQ1-515	NM_000218	exon14	c.C1710G	p.P570P	GAAGCCCTCACTG	.	185	53	142	0	.	22	21	1	0	0
RASSF10	644943	broad.mit.edu	37	11	13031528	13031528	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001080521	exon1	c.G405T	p.L135L	ATCGCTGCCTAAC	.	78	9	13	1	.	0	0	0	0	0
SOX6	55553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	16010773	16010773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SOX6-93	NM_001145819	exon14	c.G1775T	p.S592I	GCTTTACTTCCTG	.	143	61	97	1	.	0	0	0	0	0
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30032894	30032894	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KCNA4-517	NM_002233	exon2	c.A1332G	p.R444R	AATGATTCTGAGG	.	104	30	71	0	.	0	0	0	0	0
AMBRA1	55626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46419222	46419222	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AMBRA1-136	NM_001267782	exon20	c.C3684T	p.G1228G	GCTTAGGCCTCGC	.	104	48	71	1	.	52	20	32	0	0
PRB1	5542	broad.mit.edu	37	12	11506352	11506352	+	Missense_Mutation	SNP	G	G	T	rs200997903		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PRB1-90	.	.	.	.	GGGGCTGGTTGCC	.	150	7	87	4	G|0.999;T|0.001	0	0	0	0	0
C12orf39	80763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21680692	21680692	+	Silent	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C12orf39-90	NM_030572	exon4	c.G177C	p.R59R	GAGCCGGAGAAAG	.	215	158	203	1	.	154	0	154	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49436945	49436945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MLL2-612	NM_003482	exon25	c.C5558T	p.A1853V	GGGGATGCCTTCA	.	104	8	96	0	.	4	4	0	0	0
MDM1	56890	ucsc.edu;bcgsc.ca	37	12	68715135	68715135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MDM1-95	NM_017440	exon7	c.C997T	p.P333S	GATTTGGCATGTT	.	43	4	47	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	83	6	21	0	.	62	62	0	0	0
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MYH7-94	NM_000257	exon32	c.G4459A	p.A1487T	CATAGGCGTTCTT	.	83	34	97	0	.	0	0	0	0	0
NFKBIA	4792	broad.mit.edu	37	14	35871853	35871853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NFKBIA-721	NM_020529	exon5	c.G653A	p.R218Q	GCAGTCCGGCCAT	.	95	4	114	0	.	551	543	8	0	0
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51368558	51368558	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ABHD12B-153	NM_001206673	exon10	c.C792T	p.N264N	CCGGAACATTCCA	.	68	45	108	0	.	0	0	0	0	0
MPP5	64398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67787027	67787027	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MPP5-91	NM_022474	exon12	c.T1450C	p.L484L	ATCATCTTGATTG	.	40	30	47	0	.	27	2	25	0	0
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75248111	75248111	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	YLPM1-71	NM_019589	exon4	c.G1365A	p.W455X	AGAATGGGAGCGA	.	166	124	197	0	.	1	0	1	0	0
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92195753	92195753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CATSPERB-138	NM_024764	exon2	c.A71G	p.Y24C	TTATTATATACTA	.	152	68	173	0	.	0	0	0	0	0
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40913801	40913801	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CASC5-660	NM_170589	exon11	c.A1417T	p.R473X	AATATGAGAGAGG	.	146	57	184	0	.	3	3	0	0	0
RNF111	54778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59344604	59344604	+	Missense_Mutation	SNP	G	G	T	rs137923008	byfrequency;alternate_allele	TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	RNF111-92	NM_017610	exon3	c.G981T	p.E327D	AGTGGAGATTGTA	.	61	23	74	0	G|0.998;A|0.002	17	10	7	0	0
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62155703	62155703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	VPS13C-92	NM_020821	exon82	c.G10888T	p.E3630X	AAGTCTCTCCTTC	.	115	41	151	0	.	23	19	4	0	0
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68434644	68434644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PIAS1-637	NM_016166	exon4	c.A571G	p.K191E	GGGACCAAATGTG	.	150	55	131	0	.	18	10	8	0	0
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81517938	81517938	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IL16-653	NM_001172128	exon2	c.A198G	p.T66T	AGACACATCGGAG	.	116	29	127	0	.	1	1	0	0	0
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89856164	89856164	+	Silent	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FANCI-92	NM_001113378	exon35	c.A3681T	p.G1227G	TACGGGAGAGAAA	.	51	21	61	0	.	14	8	6	0	0
C16orf11	146325	hgsc.bcm.edu	37	16	614703	614703	+	Missense_Mutation	SNP	G	G	C	rs199532631		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C16orf11-23	NM_145270	exon3	c.G1112C	p.W371S	TGCTGTGGCCTGA	.	30	5	0	0	.	0	0	0	0	0
BAIAP3	8938	bcgsc.ca	37	16	1397801	1397801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	BAIAP3-91	NM_003933	exon31	c.C3109A	p.L1037M	GCGGACCTGCTCC	.	169	112	23	1	.	5	1	4	0	0
FAHD1	81889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1877593	1877593	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FAHD1-90	NM_031208	exon1	c.G363T	p.L121L	GACTCTGGCGAAG	.	273	39	114	0	.	277	220	57	0	0
PKD1	5310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2153522	2153522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PKD1-91	NM_000296	exon23	c.A8536G	p.T2846A	CCTTGGTGGAGAC	.	91	68	28	1	.	298	283	15	0	0
PDXDC1	23042	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15127164	15127164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PDXDC1-91	NM_015027	exon19	c.C1720T	p.L574F	AGCTGCCTTTATG	.	206	143	98	2	.	282	64	218	0	0
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66670440	66670440	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CMTM4-227	NM_178818	exon2	c.A231T	p.A77A	GGAGCATGCCATG	.	95	5	120	0	.	9	9	0	0	0
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90127007	90127007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PRDM7-92	NM_001098173	exon9	c.T975A	p.D325E	CTCTTCATCATCC	.	210	119	343	0	.	0	0	0	0	0
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3514081	3514081	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SHPK-69	NM_013276	exon7	c.C1210A	p.R404R	TGCCTCGGCACAG	.	169	99	126	0	.	10	3	7	0	0
P2RX1	5023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3808622	3808622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	P2RX1-70	NM_002558	exon2	c.C177G	p.S59R	GAGGCCGCTCGAG	.	117	31	99	0	.	0	0	0	0	0
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4873373	4873373	+	Missense_Mutation	SNP	G	G	A	rs189574616		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CAMTA2-91	NM_001171167	exon18	c.C3082T	p.P1028S	CAAAGGGCAGTTC	.	121	32	50	0	G|0.999;A|0.000	1	0	1	0	0
TP53I13	90313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27899239	27899239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TP53I13-90	NM_138349	exon6	c.C593G	p.S198C	AGCCCTCTTCTAG	.	37	15	32	0	.	223	92	131	0	0
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29220519	29220519	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ATAD5-93	NM_024857	exon21	c.A4648T	p.K1550X	GCTAGGAAACACT	.	93	54	70	0	.	8	3	5	0	0
PIEZO2	63895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10691260	10691260	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_022068	exon44	c.A6973T	p.K2325X	AGCTCTTGGTGAG	.	272	76	194	0	.	8	8	0	0	0
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20606136	20606136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	RBBP8-659	NM_002894	exon19	c.C2627G	p.P876R	CTTGTCCTCGTCC	.	305	78	232	0	.	256	192	64	0	0
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1481811	1481811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCSK4-90	NM_017573	exon15	c.C2215T	p.R739C	TGGCACGGGAGAG	.	104	12	75	0	.	23	18	4	0	1
NRTN	4902	hgsc.bcm.edu	37	19	5827909	5827909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NRTN-90	NM_004558	exon2	c.G319A	p.E107K	CTGCGCGAGCTGG	.	9	8	0	0	.	0	0	0	0	0
MED26	9441	bcgsc.ca	37	19	16688124	16688124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MED26-70	NM_004831	exon3	c.C517G	p.L173V	GGACCAGGGGGTC	.	88	41	44	1	.	6	3	3	0	0
GAPDHS	26330	hgsc.bcm.edu	37	19	36033313	36033313	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GAPDHS-226	NM_014364	exon5	c.540+2T>C	.	CTTCGGTAAGCTG	.	87	13	58	0	.	1	1	0	0	0
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36606539	36606539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TBCB-90	NM_001281	exon1	c.A77T	p.K26M	CCGAGAAGCGATA	.	159	72	98	0	.	67	44	23	0	0
FBL	2091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40330915	40330915	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FBL-91	NM_001436	exon4	c.C336T	p.V112V	CCCAGGGACCAGG	.	93	26	172	0	.	150	88	62	0	0
KLK5	25818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51451945	51451945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KLK5-226	NM_012427	exon5	c.A677C	p.D226A	GTGTCATCTATCT	.	114	53	138	0	.	2	0	2	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	86	16	86	0	C|0.500;T|0.500	3	3	0	0	0
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17847696	17847696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SMC6-292	NM_001142286	exon27	c.A3152C	p.Q1051P	ATGCTTTGAGGTG	.	43	22	33	0	.	0	0	0	0	0
IFIH1	64135	ucsc.edu	37	2	163139080	163139080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IFIH1-91	NM_022168	exon6	c.C1102A	p.L368I	CAACTAGCAGTAC	.	39	4	28	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179547441	179547441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TTN-636	NM_001267550	exon135	c.A33077C	p.H11026P	TCTTCATGCTCTT	.	107	55	82	0	.	0	0	0	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186671593	186671593	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FSIP2-90	NM_173651	exon17	c.C17827T	p.Q5943X	GGAAATCAGTTCC	.	90	23	65	0	.	0	0	0	0	0
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217724631	217724631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TNP1-90	NM_003284	exon1	c.C127T	p.R43W	CGCCCCGTTTCCT	.	156	74	126	0	.	0	0	0	0	0
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228399580	228399580	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AGFG1-228	NM_001135187	exon9	c.C1116G	p.G372G	AAGTGGCTTTGGG	.	218	130	186	1	.	80	23	57	0	0
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	235943690	235943690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SH3BP4-94	NM_014521	exon3	c.C44T	p.P15L	GCCTCCCTCGCTG	.	80	30	76	0	.	18	6	12	0	0
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17417493	17417493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCSK2-157	NM_002594	exon8	c.C850T	p.L284F	CGGGAGCTCACGC	.	174	65	81	0	.	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CST3-91	NM_000099	exon1	c.C12T	p.P4P	GCGCAGGGGCCCG	.	8	5	0	0	T|0.037;C|0.962	308	78	230	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	.	.	.	.	TTCTCCTGCTTAG	.	69	4	61	0	.	8	8	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	957	49	894	25	.	233	222	11	0	0
BPIFB1	92747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31892698	31892698	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_033197	exon13	c.1254+1G>A	.	TTCCAAGTAAGTG	.	201	73	98	0	.	0	0	0	0	0
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62859303	62859303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MYT1-704	NM_004535	exon18	c.A2654T	p.K885M	ACGACAAGGAGGA	.	213	82	141	0	.	0	0	0	0	0
KRTAP26-1	388818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31691828	31691828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KRTAP26-1-69	NM_203405	exon1	c.C526G	p.L176V	CGTGAAGACTTTG	.	273	71	211	1	.	0	0	0	0	0
ZNF280A	129025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22869192	22869192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ZNF280A-69	NM_080740	exon2	c.A763G	p.I255V	TTGAAATGTCTGT	.	121	100	129	1	.	0	0	0	0	0
SELO	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50649114	50649114	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	.	.	.	.	CGCGTACAGCAAG	.	149	104	128	1	.	24	2	22	0	0
IQSEC1	9922	broad.mit.edu	37	3	12949941	12949941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IQSEC1-91	NM_014869	exon12	c.T2705A	p.L902Q	CGGCTCAGTGTTC	.	110	4	102	0	.	6	6	0	0	0
SETD2	29072	bcgsc.ca	37	3	47098860	47098860	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SETD2-1273	NM_014159	exon15	c.G6414A	p.Q2138Q	CTGTTGCTGTTGT	.	109	83	159	0	.	3	3	0	0	0
ATP1B3	483	bcgsc.ca	37	3	141626058	141626058	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ATP1B3-90	NM_001679	exon3	c.T288C	p.S96S	ATTCAGTAGGTCT	.	78	5	96	0	.	99	99	0	0	0
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151012432	151012432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GPR87-153	NM_023915	exon3	c.T602A	p.V201D	CATTTGACCCCCA	.	178	36	125	0	.	0	0	0	0	0
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	13602646	13602646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_148894	exon10	c.A5878C	p.S1960R	CTGCACTGGTCAC	.	152	14	114	0	.	21	20	1	0	0
PDS5A	23244	bcgsc.ca	37	4	39851214	39851214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001100399	exon27	c.T3145C	p.F1049L	TCATAAAGGCATG	.	76	23	90	0	.	25	25	0	0	0
SLC10A4	201780	hgsc.bcm.edu	37	4	48485850	48485850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC10A4-90	NM_152679	exon1	c.C272G	p.P91R	GGGCGCCCCACGC	.	34	10	2	0	.	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	14	12	0	0	G|0.970;T|0.030	3	0	3	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123260393	123260393	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KIAA1109-80	NM_015312	exon70	c.T12182A	p.V4061E	TACCAGTATCAAG	.	121	66	115	0	.	41	18	23	0	0
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	183713663	183713663	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001080477	exon25	c.C5838T	p.V1946V	GAGGGTCTTATTC	.	206	69	149	0	.	2	1	1	0	0
NKD2	85409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1033498	1033498	+	Missense_Mutation	SNP	G	G	A	rs144426465		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NKD2-226	NM_001271082	exon5	c.G214A	p.A72T	CTCCCCGCTGAGA	.	226	51	90	0	G|1.000;A|0.000	0	0	0	0	0
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	59893587	59893587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	DEPDC1B-91	NM_018369	exon11	c.G1583A	p.R528Q	TACATTCGAAAAC	.	77	21	71	0	.	12	10	2	0	0
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	77521385	77521385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AP3B1-90	NM_003664	exon6	c.T584G	p.L195R	TTCAGAAGTTTTT	.	88	54	46	0	.	65	25	39	1	0
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140037217	140037217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IK-67	NM_006083	exon10	c.C880T	p.R294C	GGAACCCGTAACA	.	269	59	203	0	.	302	198	104	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531290	140531290	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCDHB6-91	NM_018939	exon1	c.C1452T	p.V484V	CCAGGTCACCTAC	.	237	7	137	1	.	1	0	1	0	0
PCDHGB3	56102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140751665	140751665	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_018924	exon1	c.G1704A	p.G568G	TCTGGGGCCCGAA	.	296	76	123	1	.	1	1	0	0	0
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24836059	24836059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FAM65B-91	NM_014722	exon16	c.G2143A	p.E715K	GCGCTTCACTGAG	.	252	75	170	0	.	2	2	0	0	0
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26056096	26056096	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	HIST1H1C-231	NM_005319	exon1	c.A561G	p.K187K	AGCACTTTTGGCA	.	143	12	95	0	.	47	33	14	0	0
GRM4	2914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34059858	34059858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GRM4-525	NM_001256811	exon3	c.G538A	p.A180T	TGGAGGCGTAGCT	.	182	83	128	2	.	0	0	0	0	0
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103050896	103050896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC26A5-91	NM_206883	exon7	c.C671G	p.S224C	AACATGGAGGTGA	.	83	26	86	0	.	0	0	0	0	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131887415	131887415	+	Missense_Mutation	SNP	C	C	T	rs201337636		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PLXNA4-91	NM_020911	exon12	c.G2576A	p.R859H	GTGATGCGGGGGT	.	48	8	34	0	C|0.999;T|0.001	0	0	0	0	0
EIF4EBP1	1978	bcgsc.ca	37	8	37914734	37914734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	EIF4EBP1-846	NM_004095	exon2	c.G281A	p.S94N	AAGCCAGCCAGAG	.	56	4	52	0	.	43	43	0	0	0
STAU2	27067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	74464271	74464271	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	STAU2-90	NM_001164380	exon13	c.T1506C	p.Y502Y	TGCTAAATATTCC	.	143	61	152	0	.	96	40	56	0	0
OR13F1	138805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107267461	107267461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	OR13F1-115	NM_001004485	exon1	c.T918G	p.I306M	GCTGATTAGAAAT	.	44	18	69	0	.	0	0	0	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131379924	131379924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SPTAN1-158	NM_001130438	exon42	c.A5363G	p.K1788R	GGGAGAAGAAGCT	.	143	50	118	0	.	0	0	0	0	0
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140710514	140710514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	EHMT1-154	NM_024757	exon23	c.G3374A	p.R1125K	GTCTCAGGTGAGA	.	67	35	57	0	.	16	0	16	0	0
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1407702	1407702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CSF2RA-42	NM_172247	exon4	c.G394T	p.D132Y	AATGCGGATTTAA	.	389	127	282	0	.	68	35	33	0	0
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12708337	12708337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FRMPD4-263	NM_014728	exon8	c.G705T	p.E235D	TCAAGAGAAGCTC	.	118	99	63	1	.	0	0	0	0	0
NAA10	8260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153198018	153198018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NAA10-159	NM_001256119	exon4	c.G199A	p.V67M	GGGGCACATCATC	.	87	32	51	0	.	152	89	62	1	0
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153700940	153700940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PLXNA3-132	NM_017514	exon33	c.C5528T	p.T1843M	TTCTCACGGCTCT	.	205	178	137	0	.	0	0	0	0	0
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	1	60019871	60019884	+	Frame_Shift_Del	DEL	TCTGTGGAACGTCT	TCTGTGGAACGTCT	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	TCTGTGGAACGTCT	TCTGTGGAACGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FGGY-69	NM_001113411	exon8	c.875_888del	p.292_296del	.	.	157	48	236	0	.	0	0	0	0	0
ITGA6	3655	hgsc.bcm.edu	37	2	173352476	173352476	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ITGA6-227	NM_000210	exon17	c.2265delA	p.L755fs	.	.	73	14	81	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47098859	47098859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SETD2-1273	NM_014159	exon15	c.6415delC	p.Q2139fs	.	.	112	83	164	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu	37	3	47098859	47098860	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SETD2-1273	NM_014159	exon15	c.6414_6415del	p.2138_2139del	.	.	114	48	163	0	.	0	0	0	0	0
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	137964017	137964040	+	In_Frame_Del	DEL	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ARMC8-90	NM_213654	exon13	c.1084_1107del	p.362_369del	.	.	139	22	147	0	.	0	0	0	0	0
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	39851206	39851213	+	Frame_Shift_Del	DEL	CTTCATAA	CTTCATAA	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CTTCATAA	CTTCATAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001100399	exon27	c.3146_3153del	p.1049_1051del	.	.	82	23	95	0	.	0	0	0	0	0
SERF1A	8293	hgsc.bcm.edu	37	5	70196698	70196698	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SERF1A-68	NM_022968	exon1	c.2delT	p.M1fs	.	.	307	48	119	0	.	0	0	0	0	0
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	15468982	15468982	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PSIP1-658	NM_001128217	exon13	c.1179delC	p.H393fs	.	.	51	28	99	0	.	0	0	0	0	0
TRIM44	54765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	35684955	35684956	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TRIM44-227	NM_017583	exon1	c.296_297insT	p.S99fs	.	.	253	66	174	0	.	0	0	0	0	0
C17orf64	124773	broad.mit.edu	37	17	58499974	58499975	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C17orf64-271	NM_181707	exon1	c.21_22insG	p.Q7fs	TGGGCAAGGGGGT	.	196	6	166	0	.	0	0	0	0	0
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182765617	182765618	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SSFA2-153	NM_001130445	exon7	c.698_699insT	p.N233fs	.	.	84	19	69	0	.	0	0	0	0	0
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196612951	196612952	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SENP5-659	NM_152699	exon2	c.899_900insT	p.S300fs	.	.	94	46	72	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	84.0	17.0	78.0	0.0	.	0	0	0	0	0
KLHL17	339451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	898747	898748	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KLHL17-90	NM_198317	exon8	c.G1219A	p.E407K	ACCGTGGAGTCCT	.	177.0	124.0	166.0	1.0	.	0	0	0	0	0
NMUR2	56923	broad.mit.edu	37	5	151775087	151775088	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NMUR2-526	NM_020167	exon3	c.T869A	p.F290Y	CTGAAGAAGAGTC	.	459	9	372	0	.	0	0	0	0	0
