Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FBXO2	26232	hgsc.bcm.edu	37	1	11710791	11710791	+	Silent	SNP	C	C	G	rs61749273	bycluster	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FBXO2-226	NM_012168	exon2	c.G123C	p.A41A	GGCGGCCGCCGCC	.	4	2	1	0	.	0	0	0	0	0
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85648788	85648788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SYDE2-70	NM_032184	exon3	c.A1537G	p.N513D	ACCAATTAATTGA	.	156	9	154	0	.	0	0	0	0	0
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209800244	209800244	+	Missense_Mutation	SNP	C	C	T	rs144249951		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	LAMB3-156	NM_000228	exon13	c.G1565A	p.R522Q	TAGGTCCGGTCTG	.	73	15	68	0	C|1.000;T|0.000	6	2	4	0	0
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu	37	1	224302059	224302059	+	Silent	SNP	C	C	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FBXO28-661	NM_001136115	exon1	c.C228G	p.L76L	CATCCTCAGCTTT	.	25	3	11	0	.	4	4	0	0	0
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10011061	10011061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SBF2-93	NM_030962	exon13	c.G1378A	p.E460K	GTTGCTCAGCAAG	.	61	15	56	0	.	2	2	0	0	0
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74880776	74880776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLCO2B1-154	NM_007256	exon6	c.C748A	p.R250S	ATGCTGCGCCTTT	.	155	43	158	0	.	11	10	1	0	0
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57005874	57005874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	BAZ2A-22	NM_013449	exon6	c.C1298T	p.T433I	GGGGAGGTTGTTG	.	73	55	37	0	.	14	4	10	0	0
ASCL1	429	hgsc.bcm.edu	37	12	103352211	103352211	+	Silent	SNP	G	G	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ASCL1-90	NM_004316	exon1	c.G189C	p.A63A	GCAGGCGCCGCAG	.	14	5	7	2	.	0	0	0	0	0
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41767953	41767953	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KBTBD7-91	NM_032138	exon1	c.C441T	p.A147A	GTCGGAGGCCGCG	.	105	31	115	0	.	3	2	1	0	0
TDRD3	81550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61103190	61103190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TDRD3-516	NM_001146070	exon11	c.G1831A	p.A611T	GTCACAGCTGTAC	.	84	32	57	0	.	15	12	3	0	0
SLC7A8	23428	hgsc.bcm.edu	37	14	23597353	23597353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC7A8-91	NM_012244	exon10	c.T1316C	p.V439A	CTGAAGACCAGCA	.	47	3	62	0	.	4	4	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45650876	45650876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FANCM-569	NM_020937	exon16	c.G4354A	p.A1452T	CTTCATGCTGTCA	.	50	13	48	0	.	2	1	1	0	0
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55890942	55890942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TBPL2-90	NM_199047	exon6	c.T986G	p.I329S	CTATAAATAAGAC	.	142	40	151	0	.	0	0	0	0	0
GPR135	64582	hgsc.bcm.edu	37	14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	rs1752428		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	GPR135-90	NM_022571	exon1	c.A14C	p.Q5P	GGCGGCTGCGGCT	.	3	3	0	0	T|0.531;G|0.469	0	0	0	0	0
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63447722	63447722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KCNH5-98	NM_172375	exon6	c.C810A	p.F270L	CCCCACGAAAGTC	.	81	35	62	0	.	0	0	0	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	33603296	33603296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RYR3-520	NM_001243996	exon1	c.C50T	p.T17I	TGAGGACTGTGAG	.	47	16	48	0	.	0	0	0	0	0
ADPGK	83440	hgsc.bcm.edu	37	15	73045222	73045222	+	Silent	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ADPGK-90	NM_031284	exon7	c.G951T	p.A317A	AGTCACCGCGGGA	.	71	4	66	0	.	22	21	1	0	0
CSPG4	1464	hgsc.bcm.edu	37	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	A	rs200187536		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CSPG4-229	NM_001897	exon3	c.C1015T	p.R339C	CCAGGCGGTGTTC	.	41	5	33	1	G|0.999;A|0.001	3	3	0	0	0
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	716291	716291	+	Missense_Mutation	SNP	C	C	A	rs143767432	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	WDR90-92	NM_145294	exon37	c.C4681A	p.R1561S	ACCTTCCGTGTGC	.	98	27	105	0	C|0.996;T|0.004	35	20	15	0	0
TMC5	79838	hgsc.bcm.edu	37	16	19498618	19498618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TMC5-91	NM_001105249	exon17	c.T2543C	p.V848A	CCGGGGTCTTGTG	.	77	4	63	0	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27519910	27519910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	GTF3C1-94	NM_001520	exon8	c.T1193C	p.L398P	GCTTCTAGTTTTC	.	118	36	91	0	.	2	2	0	0	0
PELP1	27043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4575082	4575082	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PELP1-24	NM_014389	exon16	c.G3204A	p.E1068E	CTCAGTCTCCTCT	.	67	12	49	0	.	109	74	35	0	0
SOX15	6665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7492754	7492754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SOX15-135	NM_006942	exon1	c.A241G	p.K81E	GGCGCTTGGAGAT	.	58	22	52	0	.	1	0	1	0	0
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7758402	7758402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TMEM88-68	NM_203411	exon1	c.G10T	p.V4F	GCGGATGTCCCCG	.	43	11	33	1	.	6	6	0	0	0
TLCD1	116238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27052951	27052951	+	Silent	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TLCD1-68	NM_138463	exon1	c.C165A	p.S55S	CACAATGGAGTGA	.	82	31	63	0	.	9	6	3	0	0
DDX52	11056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36003445	36003445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	DDX52-228	NM_007010	exon1	c.A5G	p.D2G	TGGACGTCCATCT	.	85	17	77	0	.	1	0	1	0	0
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38933310	38933310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KRT27-90	NM_181537	exon8	c.A1321G	p.T441A	CCACAGTGTGAAC	.	133	28	120	0	.	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu;bcgsc.ca	37	17	39296291	39296291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	.	NM_030976	exon1	c.G449T	p.C150F	GGGCGGCAGCAGC	.	60	6	37	0	.	0	0	0	0	0
FOXJ1	2302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74134123	74134123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FOXJ1-227	NM_001454	exon3	c.G577T	p.G193C	AGAAGCCCCCCTT	.	58	19	70	0	.	14	5	9	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	971936	971936	+	Silent	SNP	C	C	G	rs138086881	byfrequency;alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ARID3A-90	NM_005224	exon9	c.C1653G	p.G551G	AGGAGGCGGCGGC	.	89	5	67	0	C|0.999;T|0.001	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8551158	8551158	+	Missense_Mutation	SNP	G	G	A	rs199749036		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	HNRNPM-68	NM_005968	exon14	c.G1846A	p.G616S	GGTGGCGGTGCCA	.	74	28	85	0	G|0.999;A|0.000	91	56	35	0	0
ZNF497	162968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58867603	58867603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ZNF497-90	NM_001207009	exon2	c.G1399T	p.E467X	GCCTCTCGCCCGT	.	30	9	17	0	.	8	3	5	0	0
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44207047	44207047	+	Silent	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	LRPPRC-93	NM_133259	exon3	c.T387C	p.S129S	ACCACAACTACGT	.	75	23	50	0	.	8	6	2	0	0
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167284362	167284362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SCN7A-67	NM_002976	exon17	c.T2789A	p.I930N	TCTACAATCTTGC	.	46	15	30	0	.	0	0	0	0	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56090837	56090837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CTCFL-292	NM_001269044	exon5	c.G1113C	p.Q371H	GCAACACTGAAAG	.	296	139	247	0	.	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18293564	18293564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MICAL3-68	NM_015241	exon28	c.G5461A	p.E1821K	CCTCCTCCGTGTA	.	93	21	91	0	.	17	8	9	0	0
AP1B1	162	hgsc.bcm.edu	37	22	29738275	29738275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	AP1B1-92	NM_001127	exon12	c.A1535G	p.Q512R	CCCACCTGAGTGG	.	38	3	29	0	.	0	0	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42154472	42154472	+	Silent	SNP	A	A	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MEI1-70	NM_152513	exon18	c.A2055C	p.G685G	GGAGGGAGCTGCT	.	36	12	36	0	.	0	0	0	0	0
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43010826	43010826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	POLDIP3-90	NM_178136	exon1	c.G38A	p.R13H	GCCCCGCGCTTCC	.	110	26	125	0	.	7	5	2	0	0
MCAT	27349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43533107	43533107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MCAT-91	NM_173467	exon3	c.G709A	p.V237M	AAATCACCCTGCA	.	245	62	211	0	.	54	30	24	0	0
SHISA5	51246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48510782	48510782	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SHISA5-68	NM_016479	exon5	c.G621A	p.P207P	GTAGGCCGGTGGG	.	135	30	148	0	.	139	102	37	0	0
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160249310	160249310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KPNA4-226	NM_002268	exon6	c.A323G	p.D108G	AAGTCATCAATTG	.	139	31	153	0	.	23	18	5	0	0
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42037333	42037333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC30A9-91	NM_006345	exon7	c.T652G	p.F218V	AGAGATTTCTTGG	.	139	33	123	0	.	10	4	6	0	0
PRDM9	56979	hgsc.bcm.edu	37	5	23526915	23526915	+	Missense_Mutation	SNP	T	T	C	rs199686868	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PRDM9-139	NM_020227	exon11	c.T1718C	p.I573T	AGAGGATACACAC	.	153	8	133	1	.	0	0	0	0	0
ZCCHC9	84240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80600585	80600585	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ZCCHC9-91	NM_001131036	exon2	c.G9A	p.R3R	GACCAGGTGGGCC	.	124	34	83	0	.	6	5	1	0	0
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140753888	140753888	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PCDHGA6-67	NM_018919	exon1	c.C238T	p.R80X	AATCCGCGAAACG	.	103	36	84	0	.	1	1	0	0	0
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	159520919	159520919	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PWWP2A-68	NM_052927	exon2	c.C738T	p.V246V	ATGCGGGACAGGA	.	116	33	111	0	.	5	3	2	0	0
RPL10A	4736	broad.mit.edu	37	6	35436591	35436591	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RPL10A-91	NM_007104	exon2	c.C21T	p.R7R	CTCTCGCGACACC	.	21	4	17	0	.	1569	991	576	2	0
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138200108	138200108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TNFAIP3-1498	NM_001270507	exon7	c.C1526T	p.A509V	GCCACGCCCCAGA	.	73	17	74	0	.	44	40	4	0	0
CBX3	11335	hgsc.bcm.edu	37	7	26251700	26251700	+	Splice_Site	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CBX3-227	NM_007276	exon6	c.426-2A>T	.	TAAAACAGGAAAG	.	68	5	58	0	.	0	0	0	0	0
FAM91A1	157769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124787418	124787418	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FAM91A1-91	NM_144963	exon3	c.C189A	p.Y63X	CAGATACTATGAG	.	74	33	56	0	.	1	1	0	0	0
SUSD1	64420	hgsc.bcm.edu;bcgsc.ca	37	9	114820888	114820888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.T1929A	p.F643L	GTTGCTAAAGAAG	.	146	36	134	0	.	3	3	0	0	0
BSPRY	54836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116132384	116132384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	BSPRY-135	NM_017688	exon6	c.T1171A	p.F391I	CCAGTCTTTGCTG	.	118	37	156	1	.	10	7	3	0	0
DFNB31	25861	hgsc.bcm.edu	37	9	117170277	117170277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	DFNB31-95	NM_001173425	exon8	c.A1648G	p.T550A	CGCCAGTTTCCTC	.	15	2	25	0	.	8	8	0	0	0
RPL7A	6130	ucsc.edu	37	9	136216909	136216909	+	Splice_Site	SNP	T	T	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RPL7A-90	NM_000972	exon4	c.415+2T>A	.	AGCAGGTGAGTAG	.	116	1	105	1	.	1	1	0	0	0
C9orf172	389813	broad.mit.edu	37	9	139739071	139739071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	.	NM_001080482	exon1	c.G205C	p.E69Q	CTGCCGGAGCCAC	.	8	3	9	0	.	2	1	1	0	0
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8075357	8075374	+	Frame_Shift_Del	DEL	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ERRFI1-91	NM_018948	exon3	c.196_202del	p.66_68del	.	.	80	12	89	0	.	0	0	0	0	0
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	105793785	105793785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	COL17A1-95	NM_000494	exon52	c.4074delC	p.G1358fs	.	.	99	17	104	0	.	0	0	0	0	0
MICALCL	84953	broad.mit.edu	37	11	12316384	12316389	+	In_Frame_Del	DEL	CTCCTA	CTCCTA	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	CTCCTA	CTCCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MICALCL-91	NM_032867	exon3	c.1406_1411del	p.469_471del	CTCCTCCTCCTAC	.	9	5	8	0	.	0	0	0	0	0
BIVM-ERCC5	0	broad.mit.edu	37	13	103524612	103524612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	.	NM_001204425	exon21	c.4105delA	p.K1369fs	AAAGTGAAAAAAA	.	72	7	70	0	.	0	0	0	0	0
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27380072	27380083	+	In_Frame_Del	DEL	GGTTGCCCAGGG	GGTTGCCCAGGG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	GGTTGCCCAGGG	GGTTGCCCAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PIPOX-90	NM_016518	exon3	c.398_409del	p.133_137del	.	.	126	27	148	0	.	0	0	0	0	0
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	79514289	79514299	+	Frame_Shift_Del	DEL	TGAGACTGTAG	TGAGACTGTAG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TGAGACTGTAG	TGAGACTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	C17orf70-92	NM_025161	exon5	c.1809_1819del	p.603_607del	.	.	90	31	89	0	.	0	0	0	0	0
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	148684830	148684834	+	Frame_Shift_Del	DEL	AATCT	AATCT	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AATCT	AATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ACVR2A-831	NM_001616	exon11	c.1529_1533del	p.510_511del	.	.	80	17	49	0	.	0	0	0	0	0
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112282282	112282290	+	In_Frame_Del	DEL	TATGCTCCT	TATGCTCCT	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TATGCTCCT	TATGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC35A5-91	NM_017945	exon2	c.32_40del	p.11_14del	.	.	89	19	98	0	.	0	0	0	0	0
SUSD1	64420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114820886	114820886	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.1931delG	p.S644fs	.	.	144	34	135	0	.	0	0	0	0	0
SUSD1	64420	hgsc.bcm.edu	37	9	114820890	114820890	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.1927delT	p.F643fs	.	.	142	26	133	0	.	0	0	0	0	0
PCDH8	5100	broad.mit.edu	37	13	53421017	53421018	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PCDH8-153	NM_032949	exon1	c.1555_1556insAT	p.V519fs	CGGCCACCGTGGC	.	7	3	13	0	.	0	0	0	0	0
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	44185564	44185565	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PDE9A-92	NM_002606	exon15	c.1316_1317insG	p.M439fs	.	.	41	16	53	0	.	0	0	0	0	0
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30805476	30805477	+	Splice_Site	INS	-	-	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SEC14L2-90	NM_033382	exon7	c.580+1->T	.	.	.	122	33	136	0	.	0	0	0	0	0
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38880710	38880711	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ADAM9-227	NM_003816	exon9	c.780_781insGG	p.V260fs	.	.	80	26	84	0	.	0	0	0	0	0
COL17A1	1308	bcgsc.ca	37	10	105793785	105793786	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	COL17A1-95	NM_000494	exon52	c.G4073T	p.G1358V	CCATTGCCAGCAT	.	88	17	100	0	.	0	0	0	0	0
