Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LOC440563	0	broad.mit.edu;bcgsc.ca	37	1	13183399	13183399	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_001136561	exon2	c.T474C	p.S158S	GAAGCCACTTTTG	.	873	80	1035	1	.	1171	1169	2	0	0
C1orf64	149563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16332451	16332451	+	Silent	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C1orf64-153	NM_178840	exon2	c.G120C	p.T40T	CCCCACGGCTCAC	.	454	126	555	2	.	0	0	0	0	0
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65330541	65330541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JAK1-3900	NM_002227	exon8	c.T1105A	p.F369I	CAGGGAAGTAAGA	.	68	22	74	0	.	90	53	37	0	0
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110738291	110738291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC6A17-92	NM_001010898	exon10	c.T1576A	p.Y526N	GATGACTACTCGG	.	75	32	73	0	.	0	0	0	0	0
SIKE1	80143	hgsc.bcm.edu;bcgsc.ca	37	1	115323170	115323170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SIKE1-227	NM_001102396	exon1	c.G59T	p.R20L	TGCTCCCGTAGCC	.	57	5	53	0	.	8	8	0	0	0
FCGR1A	2209	hgsc.bcm.edu	37	1	149755582	149755582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FCGR1A-23	NM_000566	exon3	c.T76G	p.L26V	ATCACTTTGCAGC	.	249	40	230	0	.	6	6	0	0	0
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155148034	155148034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TRIM46-228	NM_025058	exon2	c.C236G	p.S79C	CCACCTCTCCTGC	.	97	19	118	0	.	0	0	0	0	0
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64968980	64968980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JMJD1C-275	NM_032776	exon9	c.T2710A	p.W904R	GTAGCCAAGGACT	.	46	19	57	0	.	10	5	5	0	0
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40136275	40136275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	LRRC4C-521	NM_001258419	exon7	c.T1568G	p.M523R	GTCTTCATGACCT	.	109	29	129	0	.	0	0	0	0	0
ACCS	84680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44105011	44105011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACCS-155	NM_032592	exon14	c.T1292C	p.L431P	TGCTGCTCTGGCG	.	68	13	62	0	.	33	17	16	0	0
AHNAK	79026	broad.mit.edu	37	11	62288080	62288080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	AHNAK-109	NM_001620	exon5	c.A13809C	p.K4603N	TGGACCTTTCAGA	.	185	5	183	1	.	172	172	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49434235	49434235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL2-612	NM_003482	exon31	c.G7318A	p.V2440I	GGGTAACGGGTGA	.	101	35	96	0	.	3	3	0	0	0
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56115126	56115126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RDH5-91	NM_001199771	exon2	c.T158C	p.F53S	GAGGCTTCCGAGT	.	102	29	120	1	.	45	25	20	0	0
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58120789	58120789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	AGAP2-716	NM_001122772	exon18	c.G3304A	p.A1102T	CGTGGGCGAGCTC	.	21	6	25	0	.	4	1	3	0	0
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121437343	121437343	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNF1A-1745	NM_000545	exon9	c.C1681T	p.Q561X	GCATCTCAGGCCA	.	37	10	42	0	.	57	46	11	0	0
HMGB1	3146	broad.mit.edu	37	13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	rs79036453		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HMGB1-227	NM_002128	exon5	c.A630T	p.E210D	ATCATCTTCTTCT	.	63	4	58	1	T|0.500;A|0.500	550	549	0	1	0
CCDC70	83446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52439743	52439743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CCDC70-90	NM_031290	exon2	c.C229T	p.H77Y	AAGATCCATGCTT	.	127	59	95	0	.	0	0	0	0	0
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53418949	53418949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PCDH8-153	NM_002590	exon3	c.T2959A	p.F987I	TACAGAAGGTTGA	.	112	48	122	0	.	0	0	0	0	0
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56107681	56107681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	KTN1-1147	NM_004986	exon16	c.C2014T	p.Q672X	AAGATGCAACAAA	.	55	17	46	0	.	0	0	0	0	0
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68631978	68631978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ITGA11-538	NM_001004439	exon11	c.G1136C	p.G379A	AGAACCCCATCCT	.	84	19	100	0	.	0	0	0	0	0
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	76673781	76673781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SCAPER-137	NM_020843	exon27	c.G3643A	p.V1215M	TGGCCACTTGGAT	.	50	11	59	0	.	15	10	5	0	0
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	17252766	17252766	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	XYLT1-94	NM_022166	exon6	c.G1290C	p.R430S	ATTTGTCCTGTGG	.	121	65	85	1	.	0	0	0	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20871518	20871518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	DCUN1D3-92	NM_173475	exon3	c.G605T	p.R202L	ATTTCCCGATGCA	.	371	7	252	0	.	11	11	0	0	0
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10227379	10227379	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH13-6	NM_003802	exon23	c.T2894A	p.L965X	TTCGTCAAGGTCA	.	105	68	70	0	.	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10309460	10309460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH8-101	NM_002472	exon21	c.A2330G	p.E777G	ATTTCTTCCAGAA	.	101	54	90	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	573	78	346	54	.	109	15	94	0	0
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37368584	37368584	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	STAC2-91	NM_198993	exon11	c.G1197A	p.K399K	GCCCCGCTTCTTG	.	60	14	35	0	.	1	1	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	48	8	26	0	G|0.500;C|0.500	0	0	0	0	0
ITGB4	3691	hgsc.bcm.edu	37	17	73750000	73750000	+	Silent	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ITGB4-227	NM_000213	exon33	c.C4263G	p.G1421G	CGGCGGCGCGGGC	.	4	2	0	0	.	0	0	0	0	0
C19orf21	126353	broad.mit.edu	37	19	757398	757398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C19orf21-91	NM_173481	exon2	c.C452A	p.A151E	GCCAGGCAGTCAG	.	18	7	21	0	.	42	28	14	0	0
CAPS	828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5914495	5914495	+	Silent	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CAPS-90	NM_080590	exon2	c.G78T	p.L26L	GGGCCTGGCCAGG	.	57	22	72	0	.	0	0	0	0	0
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6709834	6709834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C3-95	NM_000064	exon14	c.A1706C	p.Q569P	TCTGACTGGCCGC	.	72	18	101	1	.	176	6	170	0	0
FCER2	2208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7755293	7755293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FCER2-130	NM_002002	exon9	c.A620T	p.Q207L	CCCACCTGCTCCT	.	92	27	105	0	.	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11113781	11113781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMARCA4-1523	NM_003072	exon12	c.G1889C	p.G630A	TCACAGGCACAGA	.	111	28	148	0	.	45	19	26	0	0
MAU2	23383	broad.mit.edu;bcgsc.ca	37	19	19431865	19431865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MAU2-91	NM_015329	exon1	c.G197T	p.R66L	AGGCCCGTACACA	.	33	10	35	0	.	13	5	8	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38990577	38990577	+	Missense_Mutation	SNP	G	G	A	rs201584482		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RYR1-100	NM_001042723	exon45	c.G7244A	p.R2415Q	AAAACCGGGTGCA	.	105	35	109	0	.	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50764757	50764757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH14-23	NM_001145809	exon21	c.A2450G	p.N817S	ACCCCAACCTCTA	.	74	20	85	0	.	53	22	31	0	0
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56459545	56459545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NLRP8-361	NM_176811	exon1	c.C277A	p.P93T	CGTTTCCCTGGAC	.	37	9	49	0	.	0	0	0	0	0
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59027831	59027831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ZBTB45-90	NM_032792	exon2	c.G1210C	p.E404Q	TGCACTCATACGT	.	52	14	43	1	.	19	15	4	0	0
GRHL1	29841	broad.mit.edu;bcgsc.ca	37	2	10130855	10130855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GRHL1-92	NM_198182	exon10	c.G1301A	p.R434Q	AAGAACGAAAGCA	.	29	9	34	0	.	8	7	1	0	0
GREB1	9687	hgsc.bcm.edu;broad.mit.edu	37	2	11758729	11758729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GREB1-91	NM_014668	exon22	c.A3728G	p.Q1243R	TCCTGCAGGCCTC	.	54	3	42	0	.	11	11	0	0	0
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	15691634	15691634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NBAS-94	NM_015909	exon6	c.T362C	p.I121T	CCAATAATGGATG	.	20	6	16	0	.	9	9	0	0	0
LTBP1	4052	hgsc.bcm.edu	37	2	33172879	33172879	+	Missense_Mutation	SNP	T	T	C	rs62135680		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	LTBP1-230	NM_206943	exon1	c.T488C	p.L163P	AGCAGCTGCAGGG	.	21	10	11	1	T|0.992;C|0.008	0	0	0	0	0
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55812212	55812212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMEK2-228	NM_001122964	exon7	c.T1208C	p.M403T	TCTTGCATTACAA	.	134	29	77	0	.	59	33	26	0	0
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171687570	171687570	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GAD1-91	NM_000817	exon5	c.C415T	p.L139L	AAGGTGCTGGACT	.	128	63	137	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179419674	179419674	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN-636	NM_001267550	exon331	c.T88512C	p.D29504D	AAGGCGATCGGCA	.	64	37	50	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179650834	179650834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN-636	NM_001267550	exon14	c.C2111G	p.T704R	ACAACTGTTGCTA	.	110	56	66	0	.	0	0	0	0	0
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185801068	185801068	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ZNF804A-163	NM_194250	exon4	c.A945G	p.Q315Q	GTTTCAACTTCAG	.	67	41	47	0	.	0	0	0	0	0
RUFY4	285180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218938568	218938568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RUFY4-46	NM_198483	exon8	c.A560T	p.Q187L	AAACCCAGGGAAG	.	66	11	58	0	.	0	0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238277277	238277277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	COL6A3-526	NM_004369	exon10	c.T4829C	p.M1610T	GAGTTCATGATTC	.	190	6	161	1	.	5	5	0	0	0
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34092361	34092361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CEP250-27	NM_007186	exon30	c.A6164G	p.Q2055R	ATCAGCAGGAACG	.	52	17	29	0	.	7	6	1	0	0
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34778270	34778270	+	Silent	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPB41L1-93	NM_001258329	exon11	c.C1098A	p.V366V	GAAGGTCTGCATC	.	47	10	46	0	.	37	22	15	0	0
TMEM189-UBE2V1	387522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	48713266	48713266	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TMEM189-UBE2V1-454	NM_199203	exon6	c.A783G	p.E261E	GTCATCTTCTAGA	.	196	58	210	2	.	60	39	21	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49510230	49510230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADNP-92	NM_015339	exon5	c.T1021A	p.Y341N	CACTGTAACCCTG	.	98	31	114	0	.	22	13	9	0	0
ADARB1	104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46596347	46596347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADARB1-91	NM_001160230	exon4	c.G731A	p.R244H	AACTGCGCCCAGG	.	122	44	117	0	.	5	5	0	0	0
CRKL	1399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21272259	21272259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CRKL-439	NM_005207	exon1	c.G37C	p.A13P	CGCTCCGCCTGGT	.	60	13	60	1	.	19	8	11	0	0
APOL4	80832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36595420	36595420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	APOL4-90	.	.	.	.	TGCTGCACCCTTG	.	152	44	162	0	.	0	0	0	0	0
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127379599	127379599	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PODXL2-91	NM_015720	exon3	c.T728A	p.L243X	CCAGCTTGCTGCT	.	88	18	95	0	.	1	1	0	0	0
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142123863	142123863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	XRN1-93	NM_001042604	exon16	c.G1769C	p.R590T	CTTTTCCTCTCTT	.	82	35	76	0	.	9	3	6	0	0
CHRD	8646	hgsc.bcm.edu	37	3	184098193	184098193	+	Silent	SNP	A	A	C	rs1920128		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CHRD-93	NM_003741	exon1	c.A87C	p.P29P	CGGCCCAGAGCCC	.	4	4	0	0	T|0.680;G|0.319	6	0	6	0	0
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48578148	48578148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL-69	NM_015030	exon24	c.G2620A	p.A874T	TTGCTGCACTGCA	.	97	27	148	0	.	9	9	0	0	0
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77675996	77675996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SHROOM3-93	NM_020859	exon7	c.C4360A	p.L1454M	GCAAACCTGAAGC	.	57	21	73	0	.	29	13	16	0	0
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103225511	103225511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC39A8-90	NM_022154	exon5	c.A803G	p.H268R	TGGATATGTCCAT	.	68	23	68	0	.	149	71	78	0	0
ACSL1	2180	broad.mit.edu	37	4	185686012	185686012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACSL1-92	NM_001995	exon15	c.C1427T	p.T476I	CCTGCGGTCCAGT	.	33	9	25	0	.	0	0	0	0	0
IPO11	51194	ucsc.edu	37	5	61897615	61897615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	IPO11-227	NM_001134779	exon29	c.G2823T	p.E941D	TCTTGAGGAACCA	.	32	5	49	0	.	12	12	0	0	0
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138266342	138266342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CTNNA1-671	NM_001903	exon15	c.C2191T	p.R731X	TTTACCCGGTGAG	.	195	75	191	0	.	0	0	0	0	0
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590094	156590094	+	Silent	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FAM71B-96	NM_130899	exon2	c.A1182T	p.A394A	TCCCACTGCTGGT	.	92	36	103	0	.	0	0	0	0	0
HIST1H3A	8350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26021008	26021008	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HIST1H3A-92	NM_003529	exon1	c.C291T	p.C97C	GGCGTGCGAGGCC	.	57	14	47	0	.	0	0	0	0	0
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37442389	37442389	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FTSJD2-94	NM_015050	exon18	c.A1911G	p.L637L	TCTGCTATCTGTG	.	101	31	109	0	.	37	18	19	0	0
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45747951	45747951	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADCY1-95	NM_021116	exon18	c.T2820C	p.A940A	CTAGGCTAAGAAG	.	104	56	83	0	.	0	0	0	0	0
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104717426	104717426	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL5-93	NM_018682	exon9	c.T785G	p.I262S	CAGAGATTGATCC	.	59	25	41	0	.	13	5	8	0	0
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121237425	121237425	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	COL14A1-543	NM_021110	exon15	c.A1836T	p.S612S	ACAGTCAGAGCCT	.	78	20	99	0	.	0	0	0	0	0
WDYHV1	55093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124448833	124448833	+	Missense_Mutation	SNP	G	G	T	rs201436036	alternate_allele	TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	WDYHV1-92	NM_018024	exon4	c.G375T	p.Q125H	CCCACAGTTTAGG	.	78	24	93	1	G|0.999;A|0.000	0	0	0	0	0
WASH1	100287171	hgsc.bcm.edu	37	9	17011	17011	+	Silent	SNP	T	T	C	rs3874689		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_182905	exon7	c.A837G	p.P279P	CAGTTCTGGAATG	.	24	5	33	2	.	98	41	57	0	0
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	17332674	17332674	+	Silent	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CNTLN-91	NM_017738	exon10	c.G1590A	p.K530K	ACAGAAGCTGAGA	.	71	17	69	0	.	3	3	0	0	0
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32448942	32448942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACO1-226	NM_002197	exon20	c.A2419T	p.N807Y	CGCAGTAACCTGG	.	74	29	93	0	.	89	52	37	0	0
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86585225	86585225	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNRNPK-227	NM_031262	exon16	c.A1213T	p.K405X	CACCTTTGCCAAT	.	71	24	60	0	.	431	423	8	0	0
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94877626	94877626	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SPTLC1-154	NM_006415	exon1	c.T27A	p.V9V	CACCAGAACCCAC	.	78	13	93	0	.	49	24	25	0	0
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136305491	136305491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADAMTS13-229	NM_139027	exon16	c.G1813C	p.V605L	TATGTCGTGGCTG	.	77	27	70	0	.	5	3	2	0	0
OFD1	8481	broad.mit.edu	37	X	13754640	13754640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	OFD1-108	NM_003611	exon3	c.T155C	p.V52A	ACCCTGTATTGAG	.	156	4	154	0	.	11	11	0	0	0
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152937464	152937464	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PNCK-207	NM_001039582	exon5	c.T534A	p.G178G	CTCGCCACCCGTC	.	21	10	30	0	.	0	0	0	0	0
RC3H1	149041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173916659	173916660	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RC3H1-92	NM_172071	exon14	c.2584_2585del	p.862_862del	.	.	130	29	153	0	.	0	0	0	0	0
DBX1	120237	bcgsc.ca	37	11	20177947	20177947	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	DBX1-91	NM_001029865	exon4	c.845delC	p.P282fs	CTGCCCGGGCCCT	.	16	6	31	0	.	0	0	0	0	0
NLK	51701	broad.mit.edu;bcgsc.ca	37	17	26459690	26459690	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NLK-1403	NM_016231	exon3	c.633delT	p.Y211fs	TGACTATTTTGAA	.	37	9	33	0	.	0	0	0	0	0
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	11706688	11706688	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GREB1-91	NM_148903	exon4	c.360delG	p.V120fs	.	.	135	41	101	0	.	0	0	0	0	0
BPHL	670	broad.mit.edu;bcgsc.ca	37	6	3123907	3123927	+	In_Frame_Del	DEL	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	BPHL-90	NM_004332	exon2	c.124_144del	p.42_48del	ACCTCTGCCAAAG	.	112	8	131	0	.	0	0	0	0	0
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169510915	169510916	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	F5-157	NM_000130	exon13	c.3413_3414insAA	p.M1138fs	.	.	276	80	289	0	.	0	0	0	0	0
RPL10A	4736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35437266	35437267	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RPL10A-91	NM_007104	exon4	c.270_271insA	p.L90fs	.	.	44	12	52	0	.	0	0	0	0	0
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43463356	43463357	+	Nonsense_Mutation	DNP	CT	CT	TA	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPSTI1		exon12	c.A970T	p.R324*	GGTGCCTCGAAAA	.	27.0	16.0	47.0	0.0	.	0	0	0	0	0
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48578146	48578147	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL		exon24	c.C2621A	p.A874E	GTTGCTGCACTGC	.	99.0	29.0	149.0	1.0	.	0	0	0	0	0
