Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32205741	32205741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	BAI2-526	NM_001703	exon13	c.A2028C	p.E676D	CTTGTTTTCCGCA	.	148	50	214	0	.	2	2	0	0	0
PMF1	11243	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	156209392	156209392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PMF1-44	NM_001199654	exon5	c.A624C	p.X208C	TGAGTGAGGAGAC	.	121	42	169	0	.	80	35	45	0	0
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248637175	248637175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	OR2T3-69	NM_001005495	exon1	c.A524C	p.Q175P	TTTGCCAGTCTAG	.	430	119	467	1	.	0	0	0	0	0
CCDC3	83643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13043327	13043327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CCDC3-91	NM_031455	exon1	c.C244A	p.L82M	CGCACAGCATCTC	.	70	27	70	0	.	1	1	0	0	0
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103789497	103789497	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C10orf76-90	NM_024541	exon5	c.G312A	p.L104L	TGCGCACAGGGTC	.	46	10	48	0	.	0	0	0	0	0
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104173630	104173630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PSD-272	NM_001270965	exon6	c.G1449T	p.E483D	CTCCTCCTCCCCT	.	147	50	209	0	.	0	0	0	0	0
PIDD	55367	ucsc.edu	37	11	799396	799396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PIDD-205	NM_145886	exon16	c.G2644A	p.D882N	TGCTGTCCTGGTA	.	47	4	64	0	.	13	13	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092920	1092920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MUC2-90	NM_002457	exon30	c.C4739A	p.T1580N	CACAGACCCCAAC	.	322	15	383	7	.	0	0	0	0	0
PSMA1	5682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14536021	14536021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PSMA1-92	NM_148976	exon6	c.G289T	p.E97X	AACACTCCTGACG	.	113	41	100	1	.	79	69	10	0	0
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71944164	71944164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	INPPL1-660	NM_001567	exon17	c.G1997T	p.G666V	AGCGGGGTTCCCG	.	158	66	219	0	.	10	5	5	0	0
MMP27	64066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102563689	102563689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MMP27-229	NM_022122	exon9	c.A1277C	p.D426A	GCAGCATCAACAC	.	157	48	178	0	.	0	0	0	0	0
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117038364	117038364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PAFAH1B2-204	NM_002572	exon6	c.C639G	p.I213M	ACTGATCATGCAG	.	330	137	340	0	.	27	23	4	0	0
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21623145	21623145	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RECQL-228	NM_032941	exon16	c.A1933C	p.K645Q	CGATTTTTCTTTT	.	427	263	243	0	.	54	11	43	0	0
HOXC10	3226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54382989	54382989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	HOXC10-91	NM_017409	exon2	c.T788C	p.L263P	ATTGGCTGACAGC	.	226	47	148	1	.	71	48	23	0	0
NCKAP1L	3071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54905823	54905823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NCKAP1L-93	NM_005337	exon9	c.C875A	p.T292N	ACATCACCCTTAT	.	518	88	332	1	.	2	2	0	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59308047	59308047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	LRIG3-229	NM_153377	exon2	c.G307A	p.V103M	CTCACACTTCTCG	.	88	13	61	0	.	0	0	0	0	0
UBC	7316	ucsc.edu;bcgsc.ca	37	12	125397655	125397655	+	Silent	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	UBC-46	NM_021009	exon2	c.G663T	p.L221L	GAGTACCAGGTGC	.	894	224	627	2	.	1614	1200	413	1	0
ATP5EP2	432369	ucsc.edu	37	13	28519461	28519461	+	RNA	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	ATP5EP2-1	.	.	.	.	CAAAAGTAGTGAG	.	161	1	189	0	.	1263	1	1259	3	0
SLIRP	81892	ucsc.edu	37	14	78174462	78174462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SLIRP-90	NM_001267864	exon1	c.C8A	p.A3D	TGGCGGCCTCAGC	.	44	2	61	1	.	6	6	0	0	0
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95670380	95670380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CLMN-90	NM_024734	exon9	c.C1306T	p.P436S	AGAAAGGATCCTT	.	113	68	221	0	.	0	0	0	0	0
RMDN3	55177	bcgsc.ca	37	15	41043764	41043764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	.	NM_018145	exon4	c.C384A	p.C128X	CATGTGGCATCTG	.	47	4	66	0	.	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75968209	75968209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CSPG4-229	NM_001897	exon10	c.C6651G	p.F2217L	CTCAAGGAAGCTC	.	56	21	73	0	.	6	6	0	0	0
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90030138	90030138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RHCG-226	NM_016321	exon2	c.C263T	p.A88V	CCCACGGCGCTGA	.	357	159	379	0	.	0	0	0	0	0
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	732019	732019	+	Splice_Site	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	STUB1-226	NM_005861	exon5	c.613-1G>T	.	TTCACAGGACAAG	.	276	156	220	0	.	324	100	223	0	1
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74505165	74505165	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	GLG1-136	NM_001145667	exon15	c.T2135G	p.I712R	GAGTCTATCTGGT	.	227	60	191	0	.	11	9	2	0	0
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81094972	81094972	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C16orf46-90	NM_001100873	exon3	c.C982T	p.Q328X	GTTTCTGCAGAAG	.	316	83	250	0	.	2	2	0	0	0
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3480482	3480482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TRPV1-23	NM_018727	exon12	c.T1718C	p.I573T	CTCAGGATCATCT	.	257	125	213	0	.	0	0	0	0	0
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15968952	15968952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NCOR1-229	NM_001190440	exon32	c.C4846A	p.Q1616K	GATACTGACTTGG	.	279	72	222	0	.	6	5	1	0	0
KCNJ18	100134444	broad.mit.edu;bcgsc.ca	37	17	21318895	21318895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	.	NM_001194958	exon3	c.C241T	p.R81W	CGCTGGCGGTACA	.	373	48	300	2	.	0	0	0	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76449535	76449535	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	DNAH17-142	NM_173628	exon65	c.C10419A	p.V3473V	CTCGATGACATCC	.	238	118	203	0	.	0	0	0	0	0
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8314790	8314790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PTPRM-228	NM_001105244	exon21	c.C2854T	p.R952X	CATTCCCGAGTGA	.	72	4	100	0	.	0	0	0	0	0
PRKCSH	5589	bcgsc.ca	37	19	11546941	11546941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PRKCSH-90	NM_001001329	exon2	c.G3T	p.M1I	TGAGATGCTGTTG	.	54	4	75	1	.	110	109	1	0	0
KLK14	43847	broad.mit.edu	37	19	51584905	51584905	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	KLK14-226	NM_022046	exon4	c.C144A	p.T48T	GCTCCGGGTGCAC	.	94	4	71	0	.	0	0	0	0	0
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59082699	59082699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MZF1-91	NM_198055	exon2	c.G58A	p.V20I	CCATGACAGGCCC	.	117	39	127	0	.	3	3	0	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71376396	71376396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MPHOSPH10-93	NM_005791	exon10	c.C1709T	p.T570I	AAAAAACAGCTAC	.	77	7	74	0	.	66	64	2	0	0
WDR54	84058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74651108	74651108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	WDR54-90	NM_032118	exon6	c.A533G	p.Q178R	AGGGACAGGTGAG	.	141	26	118	3	.	1	1	0	0	0
INO80D	54891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206921631	206921631	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	INO80D-91	NM_017759	exon4	c.C255T	p.I85I	TTTCGGGATAAAG	.	134	61	113	1	.	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212248449	212248449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	ERBB4-1461	NM_005235	exon28	c.G3818A	p.R1273Q	CGGATCCGCCCAT	.	197	111	178	1	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	263	15	138	0	.	1	1	0	0	0
SALL4	57167	bcgsc.ca	37	20	50406632	50406632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SALL4-92	NM_020436	exon2	c.G2390A	p.S797N	TTGATGCTTTCGG	.	213	7	205	0	.	0	0	0	0	0
URB1	9875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33727865	33727865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	.	NM_014825	exon16	c.G1999T	p.D667Y	CCGTGTCCCGCAG	.	43	31	77	0	.	0	0	0	0	0
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39814795	39814795	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TAB1-522	NM_153497	exon6	c.G609A	p.L203L	ACAGCTGAACGTG	.	179	68	206	0	.	11	5	6	0	0
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56627039	56627039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CCDC66-135	NM_001141947	exon8	c.A978C	p.Q326H	GAAACAAGAACTG	.	69	30	123	0	.	0	0	0	0	0
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140401754	140401754	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TRIM42-227	NM_152616	exon2	c.G792A	p.K264K	CCTCAAGGCCTTC	.	248	102	277	0	.	0	0	0	0	0
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76532433	76532433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CDKL2-454	NM_003948	exon4	c.C476T	p.T159I	TAATCAGTATAAA	.	125	41	201	0	.	2	2	0	0	0
SYNPO2	171024	hgsc.bcm.edu;bcgsc.ca	37	4	119947961	119947961	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SYNPO2-92	NM_001128934	exon3	c.A437C	p.Q146P	AGAACCAAAGAAG	.	162	48	172	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126240999	126240999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	FAT4-108	NM_024582	exon1	c.G3433A	p.D1145N	CAGCCAGATTTTG	.	96	30	114	0	.	0	0	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7816984	7816984	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	ADCY2-97	NM_020546	exon23	c.C2889T	p.P963P	GGAGCCCGAGCGG	.	181	17	234	0	.	0	0	0	0	0
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37307409	37307409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NUP155-205	NM_153485	exon25	c.T2893C	p.F965L	CTTGGAAGGCCTG	.	165	67	138	0	.	0	0	0	0	0
PAM	5066	hgsc.bcm.edu;broad.mit.edu	37	5	102237063	102237063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PAM-68	NM_138822	exon3	c.G214A	p.D72N	TAGTCCGATACAT	.	63	4	98	0	.	0	0	0	0	0
RNF14	9604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141357939	141357939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RNF14-226	NM_001201365	exon5	c.G378T	p.W126C	TGCCTGGATGCAA	.	248	70	306	0	.	16	6	10	0	0
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154278113	154278113	+	Missense_Mutation	SNP	C	C	T	rs144363013		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	GEMIN5-228	NM_015465	exon23	c.G3232A	p.V1078I	CTCCTACGATGGC	.	244	85	301	0	C|1.000;T|0.000	2	0	2	0	0
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35471606	35471606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TULP1-92	NM_003322	exon12	c.C1132G	p.R378G	TGAAGCGGTTCCC	.	44	20	36	0	.	0	0	0	0	0
COL12A1	1303	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75884802	75884802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	COL12A1-142	NM_004370	exon13	c.G2662A	p.A888T	CAGACGCATACAA	.	258	98	295	2	.	0	0	0	0	0
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	154732110	154732110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CNKSR3-26	NM_173515	exon11	c.A1237G	p.N413D	GAATGTTGGTTTC	.	163	60	180	0	.	51	31	20	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116397543	116397543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MET-5874	NM_000245	exon7	c.A1915C	p.I639L	TCCATAATTATTT	.	86	40	92	0	.	10	6	4	0	0
COPG2	26958	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	130337745	130337745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	.	.	.	.	.	ATGGTAGCCATTT	.	92	22	96	0	.	1	1	0	0	0
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8643536	8643536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MFHAS1-90	NM_004225	exon3	c.A3155G	p.Q1052R	CGTCACTGGTTTC	.	135	13	165	0	.	1	1	0	0	0
VSTM4	196740	hgsc.bcm.edu;bcgsc.ca	37	10	50311832	50311835	+	Frame_Shift_Del	DEL	GGGC	GGGC	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	GGGC	GGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	VSTM4-154	NM_144984	exon3	c.528_531del	p.176_177del	.	.	130	34	201	0	.	0	0	0	0	0
CHRFAM7A	89832	bcgsc.ca	37	15	30665219	30665220	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CHRFAM7A-45	NM_139320	exon6	c.289_290del	p.97_97del	CCACTGATATCTG	.	631	230	882	1	.	0	0	0	0	0
MAP4K1	11184	hgsc.bcm.edu;bcgsc.ca	37	19	39101749	39101755	+	Frame_Shift_Del	DEL	ATGAAGT	ATGAAGT	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	ATGAAGT	ATGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MAP4K1-980	NM_007181	exon11	c.746_752del	p.249_251del	.	.	141	29	190	0	.	0	0	0	0	0
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170013708	170013708	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PRKCI-1378	NM_002740	exon15	c.1427delA	p.E476fs	.	.	85	42	118	0	.	0	0	0	0	0
SYNPO2	171024	hgsc.bcm.edu	37	4	119947965	119947967	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SYNPO2-92	NM_001128934	exon3	c.441_443del	p.147_148del	.	.	165	32	171	0	.	0	0	0	0	0
LRRC37A	9884	broad.mit.edu	37	17	44410017	44410018	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	LRRC37A-22	NM_014834	exon10	c.4804_4805insT	p.I1602fs	TGCCTCATTGTGG	.	412	111	349	2	.	0	0	0	0	0
C9orf89	84270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95874554	95874555	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C9orf89-90	NM_032310	exon5	c.G420T	p.L140R	GCTCCTGTACTGC	.	56.0	23.0	70.0	0.0	.	0	0	0	0	0
RBM19	9904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	114400219	114400220	+	Splice_Site	DNP	TC	TC	CT	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RBM19-95	NM_001146699	exon3	c.37-1G>A	.	CTTCATCTAGGAC	.	130	91	104	1	.	0	0	0	0	0
