Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KIF1B	23095	hgsc.bcm.edu	hg19	1	10338126	10338126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	KIF1B	NM_183416	exon12	c.G1102T	p.E368X	TTAAAGGAGGAGG	.	76.0	28.0	104.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
LDLRAP1	26119	hgsc.bcm.edu	hg19	1	25889207	25889207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LDLRAP1	NM_015627	exon5	c.G532A	p.E178K	AAGGAAGGTGAGA	.	84.0	28.0	107.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
RNF19B	127544	hgsc.bcm.edu	hg19	1	33402549	33402549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RNF19B	NM_153341	exon9	c.G2057C	p.G686A	GGGGAGCCACACT	.	42.0	19.0	60.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	hg19	1	38192854	38192854	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	EPHA10	NM_001099439	exon8	c.C1692G	p.P564P	AATGGCGGGGCTC	.	113.0	39.0	124.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66798100	66798100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PDE4B	NM_001037339	exon1	c.A28C	p.S10R	TTCAGTAGCACCG	.	88.0	44.0	81.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
BCL10	8915	hgsc.bcm.edu	hg19	1	85741991	85741991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	BCL10	NM_003921	exon1	c.A45C	p.E15D	CTTCACTTCAGTG	.	59.0	34.0	76.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
GBP3	2635	hgsc.bcm.edu	hg19	1	89473418	89473418	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	GBP3	NM_018284	exon11	c.C1777T	p.L593L	TCTTTAGCTTATG	.	68.0	25.0	51.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91404516	91404516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ZNF644	NM_201269	exon3	c.A2395C	p.S799R	TGAAGCTTTCAGG	.	71.0	32.0	42.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158622405	158622405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SPTA1	NM_003126	exon23	c.G3227A	p.R1076H	AGACGACGTCTGC	.	84.0	33.0	61.0	0.0	.	720	.	.	.	none	.	.	PASS	Atlas-SNP
NCSTN	23385	hgsc.bcm.edu	hg19	1	160326855	160326855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NCSTN	NM_015331	exon16	c.G1819C	p.G607R	GTCCAGGGCCCTT	.	98.0	43.0	93.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
AGT	183	hgsc.bcm.edu	hg19	1	230846200	230846200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	AGT	NM_000029	exon2	c.G397A	p.V133I	AGAGGACGGTGGC	.	74.0	25.0	94.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245319611	245319611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	KIF26B	NM_018012	exon2	c.C91T	p.P31S	ACCAAGCCCGCAG	.	95.0	50.0	117.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11924034	11924034	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LPIN1	NM_001261428	exon10	c.G1491A	p.L497L	GGCCCTGTATTTT	.	82.0	35.0	98.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	51255154	51255154	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NRXN1	NM_004801	exon2	c.C258T	p.G86G	GCGGCCGCCGCGC	.	48.0	19.0	39.0	0.0	.	1118	.	.	.	none	.	.	PASS	Atlas-SNP
WDPCP	51057	hgsc.bcm.edu	hg19	2	63380691	63380691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	WDPCP,NS,carcinoma,0,1	WDPCP	NM_015910	exon16	c.G2097C	p.R699S	TTCATTCCTTCTG	.	59.0	19.0	50.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ACTR1B	10120	hgsc.bcm.edu	hg19	2	98275931	98275931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	ACTR1B,colon,carcinoma,0,1	ACTR1B	NM_005735	exon4	c.G199A	p.G67R	GCAGCCCCCGGTG	.	34.0	12.0	45.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	hg19	2	112705128	112705128	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MERTK	NM_006343	exon4	c.C741T	p.S247S	CCCCTCCGTGCTA	.	131.0	50.0	112.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
STAM2	10254	hgsc.bcm.edu	hg19	2	152980339	152980339	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	STAM2	NM_005843	exon13	c.T1290G	p.S430S	AGGCAGAGATCTC	.	91.0	39.0	68.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
UPP2	151531	hgsc.bcm.edu	hg19	2	158978032	158978032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	UPP2	NM_001135098	exon7	c.A737G	p.D246G	AACTGGACAAAGA	.	349.0	67.0	288.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160743016	160743016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LY75	NM_002349	exon5	c.C828G	p.F276L	AATCCAGAAAATC	.	30.0	16.0	21.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167142945	167142945	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	SCN9A,NS,carcinoma,0,1	SCN9A	NM_002977	exon11	c.G1503A	p.S501S	TGATTTCGACAAT	.	53.0	13.0	51.0	0.0	.	296	.	.	.	none	.	.	PASS	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226378138	226378138	+	Silent	SNP	T	T	C	rs373061629		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	.	NM_020864	exon3	c.T273C	p.H91H	CAAACATTTCCGC	.	117.0	52.0	116.0	0.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
KCNJ13	3769	hgsc.bcm.edu	hg19	2	233633084	233633084	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	KCNJ13	NM_002242	exon3	c.A900G	p.A300A	CAGAGATGCAAAA	.	145.0	65.0	131.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	hg19	3	39175775	39175775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TTC21A	NM_145755	exon21	c.G2839T	p.A947S	CACTGTGCCATCC	.	81.0	36.0	83.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
TGM4	7047	hgsc.bcm.edu	hg19	3	44943387	44943387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TGM4	NM_003241	exon8	c.G935A	p.G312D	AGAATGGCGAGAA	.	74.0	28.0	70.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	96706660	96706660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	EPHA6_ENST00000389672,rectum,carcinoma,-2,4	EPHA6	NM_001080448	exon3	c.G937T	p.D313Y	TTTCCTGATACCA	.	74.0	32.0	75.0	0.0	.	439	.	.	.	none	.	.	PASS	Atlas-SNP
MBD4	8930	hgsc.bcm.edu	hg19	3	129156116	129156116	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MBD4	NM_003925	exon3	c.T371G	p.L124R	TTAGCAAGTGAAC	.	33.0	24.0	21.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
B3GALNT1	8706	hgsc.bcm.edu	hg19	3	160803876	160803876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	B3GALNT1	NM_001038628	exon8	c.C667A	p.H223N	AAATATGGGTTTT	.	104.0	65.0	42.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183957755	183957755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	VWA5B2	NM_138345	exon15	c.G2671A	p.A891T	CTGACAGCAGCCT	.	97.0	23.0	52.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
STX18	53407	hgsc.bcm.edu	hg19	4	4459185	4459185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	STX18	NM_016930	exon4	c.C395T	p.T132I	ACAGCGGTCCTGT	.	219.0	85.0	182.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	hg19	4	5755635	5755635	+	Missense_Mutation	SNP	C	C	T	rs372893834	alternate_allele	TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	EVC	NM_153717	exon10	c.C1439T	p.T480I	AGCCGACTGCTGA	.	108.0	59.0	140.0	0.0	.	90	.	.	.	alt	.	.	PASS	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20493404	20493404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.,1	SLIT2	NM_004787	exon9	c.C796A	p.P266T	ATGGCTCCTTCTT	.	65.0	32.0	53.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
APBB2	323	hgsc.bcm.edu	hg19	4	41015837	41015837	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	APBB2	NM_173075	exon6	c.A598T	p.I200F	CAATGATGGTGGA	.	60.0	23.0	66.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	hg19	4	71639251	71639251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RUFY3	NM_001130709	exon6	c.G900T	p.M300I	TTCAATGTATCTC	.	176.0	69.0	204.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72222802	72222802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SLC4A4	NM_001098484	exon6	c.C628T	p.R210W	TTGCTCCGGAAGC	.	76.0	23.0	58.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148800473	148800473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ARHGAP10	NM_024605	exon9	c.G923C	p.R308T	AGCACAGATCTGG	.	82.0	26.0	68.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
ETFDH	2110	hgsc.bcm.edu	hg19	4	159629584	159629584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ETFDH	NM_004453	exon13	c.G1759T	p.V587L	AACTGTGTACATT	.	81.0	34.0	90.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	hg19	5	140230427	140230427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PCDHA9	NM_031857	exon1	c.A2347G	p.T783A	GGATCTACAGAGC	.	182.0	149.0	208.0	0.0	.	373	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGC4	56098	hgsc.bcm.edu	hg19	5	140865167	140865167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PCDHGC4	NM_018928	exon1	c.G427A	p.G143R	GAAATTGGGGAGG	.	43.0	16.0	49.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
GABRP	2568	hgsc.bcm.edu	hg19	5	170235705	170235705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	GABRP	NM_014211	exon8	c.T781G	p.W261G	TTGTCCTGGGTTT	.	49.0	23.0	44.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
PFN3	345456	hgsc.bcm.edu	hg19	5	176827428	176827428	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PFN3	NM_001029886	exon1	c.G150A	p.V50V	CGTGAGCACGCCC	.	17.0	6.0	23.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7542208	7542208	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DSP	NM_004415	exon1	c.C60T	p.A20A	CCGCGCCGAGTCT	.	148.0	71.0	170.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7584627	7584627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DSP	NM_004415	exon24	c.A7132T	p.I2378F	GGGATCATTGACC	.	77.0	34.0	73.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
GCNT2	2651	hgsc.bcm.edu	hg19	6	10529857	10529857	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	GCNT2	NM_145649	exon3	c.A713C	p.N238T	TGTTAAACCACAA	.	53.0	17.0	70.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29080095	29080095	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OR2J3	NM_001005216	exon1	c.T428G	p.F143C	CTCGTTTCTGCCA	.	114.0	45.0	75.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30680834	30680834	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MDC1	NM_014641	exon5	c.T885G	p.P295P	CTCTCCAGGAGGT	.	87.0	38.0	71.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
RRP36	88745	hgsc.bcm.edu	hg19	6	42989441	42989441	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RRP36	NM_033112	exon1	c.C49T	p.R17X	GGGGCCCGACGTC	.	23.0	10.0	27.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PHKG1	5260	hgsc.bcm.edu	hg19	7	56155338	56155338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PHKG1	NM_001258459	exon3	c.T215C	p.L72P	TCCTTCAGCGTGG	.	83.0	65.0	45.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72856678	72856678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	BAZ1B	NM_032408	exon19	c.C4300G	p.Q1434E	GACACTGTTCTGT	.	158.0	118.0	78.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
CLIP2	7461	hgsc.bcm.edu	hg19	7	73752959	73752959	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	CLIP2	NM_032421	exon3	c.G303A	p.T101T	AGAGACGCAGTTC	.	102.0	17.0	54.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91624968	91624968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	AKAP9	NM_005751	exon7	c.G784A	p.D262N	GCTGCAGACTTAC	.	430.0	95.0	189.0	0.0	.	788	.	.	.	none	.	.	PASS	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92147296	92147296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PEX1	NM_000466	exon5	c.A533G	p.Q178R	TTTGGCTGAATAA	.	198.0	152.0	60.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
MTFR1	9650	hgsc.bcm.edu	hg19	8	66617006	66617006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MTFR1	NM_014637	exon5	c.T359C	p.L120S	TTTCCTTACCAGA	.	197.0	67.0	137.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
MMP16	4325	hgsc.bcm.edu	hg19	8	89068476	89068476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MMP16	NM_005941	exon8	c.C1253T	p.T418I	TGAAGAGTTGTAT	.	175.0	101.0	109.0	0.0	.	176	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF517	340385	hgsc.bcm.edu	hg19	8	146033121	146033121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ZNF517	NM_213605	exon5	c.T820C	p.S274P	CGCAGCTCCCGGC	.	67.0	37.0	49.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN3	5774	hgsc.bcm.edu	hg19	9	112145801	112145801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PTPN3	NM_002829	exon23	c.C2284A	p.P762T	CGTCGGGGGGATC	.	85.0	34.0	112.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131731688	131731688	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NUP188	NM_015354	exon10	c.T807C	p.S269S	CTTCAGTGCCCTC	.	82.0	33.0	73.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
PTPLA	9200	hgsc.bcm.edu	hg19	10	17645619	17645619	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PTPLA	NM_014241	exon4	c.T423A	p.T141T	GACCCCAGTCACA	.	169.0	11.0	210.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
OTUD1	220213	hgsc.bcm.edu	hg19	10	23729477	23729477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OTUD1	NM_001145373	exon1	c.A1091G	p.E364G	TGGGGGAGTTTAT	.	56.0	20.0	62.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104018748	104018748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	GBF1	NM_001199378	exon2	c.G53T	p.G18V	TGGTTGGGGCCAT	.	83.0	39.0	101.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRE	5791	hgsc.bcm.edu	hg19	10	129846027	129846027	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PTPRE	NM_006504	exon5	c.210-1G>C	.	CTCTAAGGTTCAG	.	94.0	45.0	86.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6579352	6579352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DNHD1	NM_144666	exon25	c.C8827A	p.L2943M	GTGGCTCTGTTGG	.	76.0	30.0	80.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7672127	7672127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PPFIBP2	NM_003621	exon22	c.G2178T	p.W726C	GGAGTGGTTACGA	.	65.0	29.0	101.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	hg19	11	7818479	7818479	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OR5P2	NM_153444	exon1	c.T11G	p.L4R	TCCTTCAGGGAAT	.	41.0	21.0	31.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
CAT	847	hgsc.bcm.edu	hg19	11	34475367	34475367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	CAT	NM_001752	exon6	c.A605C	p.D202A	TCAGTGATCGGGG	.	77.0	34.0	67.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
EXT2	2132	hgsc.bcm.edu	hg19	11	44129381	44129381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	EXT2	NM_000401	exon2	c.C218T	p.T73I	TTGCCACTGGCAT	.	84.0	32.0	101.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
ATG13	9776	hgsc.bcm.edu	hg19	11	46690086	46690086	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ATG13	NM_001205119	exon15	c.T1289A	p.F430Y	CCATGTTTGCTCC	.	61.0	33.0	77.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85445743	85445743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SYTL2	NM_001162953	exon6	c.C629A	p.T210N	ATTGAAGTATCTG	.	77.0	32.0	79.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
HTR3A	3359	hgsc.bcm.edu	hg19	11	113853914	113853914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	HTR3A	NM_000869	exon5	c.G465T	p.K155N	CTACAAGCCCCTT	.	89.0	26.0	97.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119025032	119025032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	ABCG4,NS,carcinoma,0,1	ABCG4	NM_022169	exon4	c.G419T	p.R140L	CCTTCCGCAAGAT	.	50.0	22.0	73.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	hg19	12	7528025	7528025	+	Silent	SNP	T	T	C	rs368493737		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	CD163L1	NM_174941	exon11	c.A2853G	p.G951G	TTTTCCTCCTGTG	.	59.0	23.0	45.0	0.0	.	238	.	.	.	weak	.	.	PASS	Atlas-SNP
SMCO3	0	hgsc.bcm.edu	hg19	12	14959531	14959531	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	.	NM_001013698	exon2	c.C84T	p.C28C	AGATAAGCAATCA	.	56.0	29.0	54.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4B	1975	hgsc.bcm.edu	hg19	12	53432173	53432173	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	EIF4B	NM_001417	exon12	c.T1554C	p.S518S	ACCATCTGAGGAA	.	82.0	43.0	81.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
AVIL	10677	hgsc.bcm.edu	hg19	12	58201151	58201151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	AVIL	NM_006576	exon12	c.T1454A	p.F485Y	GCCATGAAGTGGC	.	60.0	29.0	79.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
FAM71C	196472	hgsc.bcm.edu	hg19	12	100042118	100042118	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	FAM71C	NM_153364	exon1	c.A166C	p.R56R	AGCAAAAGAGGAG	.	65.0	32.0	77.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
DRAM1	55332	hgsc.bcm.edu	hg19	12	102271585	102271585	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DRAM1	NM_018370	exon1	c.G18A	p.R6R	CCTGAGGGGAATG	.	25.0	8.0	18.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104031881	104031881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	STAB2	NM_017564	exon8	c.A797G	p.E266G	GCCAAGAAGGCTA	.	89.0	34.0	77.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	hg19	12	122674790	122674790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LRRC43	NM_001098519	exon5	c.C776T	p.P259L	GAAACCCACTGGC	.	66.0	35.0	82.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25026604	25026604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PARP4	NM_006437	exon24	c.T2954C	p.L985P	AATGTCAGGCTCT	.	73.0	39.0	81.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
LECT1	11061	hgsc.bcm.edu	hg19	13	53298215	53298215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LECT1	NM_007015	exon4	c.G385A	p.E129K	ACTTCTCTCCTCC	.	51.0	27.0	44.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76195877	76195877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LMO7	NM_005358	exon1	c.G48T	p.M16I	TTGGATGTCCTAT	.	59.0	14.0	41.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76378589	76378589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	LMO7	NM_005358	exon9	c.C982A	p.L328M	GCACCTCTGAGAA	.	77.0	30.0	64.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20846278	20846278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TEP1	NM_007110	exon39	c.C5626T	p.R1876W	CCAGCCGTGCCCC	.	68.0	40.0	79.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
PRMT5	10419	hgsc.bcm.edu	hg19	14	23393872	23393872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PRMT5	NM_006109	exon9	c.A986G	p.K329R	GGGTCCTTTTCAA	.	67.0	4.0	77.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	hg19	14	36103901	36103901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RALGAPA1	NM_194301	exon32	c.C4356G	p.S1452R	AGAGAGGCTCATG	.	124.0	52.0	125.0	0.0	.	289	.	.	.	none	.	.	PASS	Atlas-SNP
BMP4	652	hgsc.bcm.edu	hg19	14	54417256	54417256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	BMP4	NM_130851	exon4	c.C721A	p.L241I	GATGGAGGTGAGT	.	107.0	44.0	141.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62536436	62536436	+	Silent	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SYT16	NM_031914	exon2	c.T639G	p.S213S	GACATCTGAGAAA	.	102.0	43.0	115.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64548159	64548159	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SYNE2	NM_182914	exon57	c.11347-2A>G	.	TTTCCCAGGCCAC	.	67.0	28.0	76.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
RDH12	145226	hgsc.bcm.edu	hg19	14	68195931	68195931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RDH12	NM_152443	exon8	c.G682T	p.V228L	TACGCAGTGCACC	.	594.0	249.0	774.0	1.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	hg19	14	76173407	76173407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TTLL5	NM_015072	exon8	c.T632G	p.I211S	GTTACATTAACAA	.	81.0	26.0	91.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
ITPK1	3705	hgsc.bcm.edu	hg19	14	93429129	93429129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ITPK1	NM_001142593	exon6	c.C430A	p.L144M	CCAGCAGCCGCAT	.	40.0	11.0	57.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42163671	42163671	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SPTBN5	NM_016642	exon29	c.C5244G	p.G1748G	CTGGCTGCCCATC	.	127.0	51.0	166.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43815125	43815125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MAP1A	NM_002373	exon4	c.A1454G	p.K485R	GAGTCAAAATAGA	.	115.0	57.0	134.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51749533	51749533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DMXL2	NM_001174116	exon36	c.G8266T	p.A2756S	CACTAGCTCCAGT	.	60.0	28.0	48.0	0.0	.	262	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	hg19	15	79760702	79760702	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	KIAA1024	NM_015206	exon4	c.G2727T	p.V909V	TGTCGTGCCCATC	.	57.0	5.0	31.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
NR2F2	7026	hgsc.bcm.edu	hg19	15	96875731	96875731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NR2F2	NM_021005	exon1	c.T397C	p.Y133H	TGCCAGTACTGCC	.	76.0	35.0	111.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
IL32	9235	hgsc.bcm.edu	hg19	16	3119208	3119208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	IL32	NM_004221	exon7	c.C419A	p.A140E	TCCATGCAGTGCA	.	210.0	41.0	220.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51171131	51171131	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SALL1	NM_002968	exon3	c.G3867A	p.E1289E	ATTGGGCTCTGAG	.	132.0	38.0	98.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	hg19	16	70170204	70170204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PDPR	NM_017990	exon10	c.A1105G	p.M369V	TGCATCATGGGCG	.	99.0	15.0	73.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
SLC43A2	124935	hgsc.bcm.edu	hg19	17	1486541	1486541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SLC43A2	NM_152346	exon11	c.T1307C	p.V436A	AAGCCCACGAGCA	.	113.0	25.0	68.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	16004686	16004686	+	Missense_Mutation	SNP	T	T	A	rs201420293	bycluster;alternate_allele	TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NCOR1	NM_001190440	exon19	c.A2616T	p.R872S	TTCATCTCTAGGT	.	80.0	47.0	46.0	0.0	.	240	.	.	.	alt	T|0.999;C|0.001	.	PASS	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	hg19	17	36636124	36636124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ARHGAP23	NM_001199417	exon14	c.G2629C	p.D877H	AGCAAGGGTAGGA	.	136.0	42.0	135.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
FAM20A	54757	hgsc.bcm.edu	hg19	17	66538847	66538847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	FAM20A	NM_017565	exon6	c.T916G	p.F306V	AGACAAAGAAAAC	.	85.0	21.0	57.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
UBE2O	63893	hgsc.bcm.edu	hg19	17	74391896	74391896	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	UBE2O	NM_022066	exon15	c.G2856A	p.K952K	GAACTTCTTGGCT	.	51.0	17.0	41.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
FOXK2	3607	hgsc.bcm.edu	hg19	17	80477826	80477826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	FOXK2,NS,carcinoma,0,1	FOXK2	NM_004514	exon1	c.G62C	p.G21A	GGGCCGGGGGCGG	.	4.0	2.0	0.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
APCDD1	147495	hgsc.bcm.edu	hg19	18	10487720	10487720	+	Nonsense_Mutation	SNP	C	C	A	rs139112764	alternate_allele	TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	APCDD1,caecum,carcinoma,0,1	APCDD1	NM_153000	exon5	c.C1230A	p.C410X	TGGCTGCGTGGCC	.	101.0	46.0	67.0	0.0	.	57	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	53018225	53018225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TCF4	NM_001243226	exon8	c.C685T	p.L229F	CTCCAAGGAGACT	.	107.0	47.0	66.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	hg19	19	7619899	7619899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PNPLA6	NM_001166111	exon24	c.T2785C	p.S929P	TGGTGCTCGGGGC	.	35.0	13.0	12.0	0.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF627	199692	hgsc.bcm.edu	hg19	19	11727866	11727866	+	Missense_Mutation	SNP	G	G	A	rs200860012	bycluster	TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	ZNF627,caecum,carcinoma,0,2	ZNF627	NM_145295	exon4	c.G548A	p.R183Q	GCATTCGAAGACA	.	99.0	48.0	69.0	0.0	.	43	.	.	.	weak	.	.	PASS	Atlas-SNP
FBXW9	84261	hgsc.bcm.edu	hg19	19	12805491	12805491	+	Missense_Mutation	SNP	A	A	T	rs201026853	by1000genomes;alternate_allele	TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	FBXW9	NM_032301	exon3	c.T595A	p.L199M	CCCACAAGTTGAC	.	92.0	36.0	87.0	0.0	.	30	.	.	.	alt	A|0.999;G|0.001	.	PASS	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17751432	17751432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	UNC13A	NM_001080421	exon21	c.G2675A	p.G892E	GGCACCCCTGGGC	.	66.0	29.0	85.0	0.0	.	299	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	hg19	19	44932512	44932512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ZNF229	NM_014518	exon6	c.A2444T	p.Q815L	ACTCTTTGGTGGT	.	92.0	45.0	66.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN2D	2906	hgsc.bcm.edu	hg19	19	48918125	48918125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	GRIN2D	NM_000836	exon6	c.C1417A	p.P473T	AGCCCTCCACCGG	.	88.0	39.0	103.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHA4	57664	hgsc.bcm.edu	hg19	19	49341323	49341323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PLEKHA4	NM_001161354	exon16	c.C1732A	p.L578I	TTGGGAGAGGCTG	.	142.0	69.0	184.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57035735	57035735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	ZNF471	NM_020813	exon5	c.A299C	p.Q100P	TGAAGCAGTTCAT	.	66.0	32.0	76.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385869	58385869	+	Nonsense_Mutation	SNP	C	C	A	rs199684163		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	ZNF814,NS,carcinoma,0,6	ZNF814	NM_001144989	exon3	c.G889T	p.E297X	CACATTCATGTTT	.	15.0	6.0	19.0	1.0	.	93	.	.	.	weak	.	.	PASS	Atlas-SNP
CST2	1470	hgsc.bcm.edu	hg19	20	23805942	23805942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	CST2,face,carcinoma,0,1	CST2	NM_001322	exon2	c.T247A	p.Y83N	AGAAGTAATTCAC	.	58.0	24.0	58.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
RNF114	55905	hgsc.bcm.edu	hg19	20	48562762	48562762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RNF114	NM_018683	exon4	c.T488A	p.F163Y	AATTATTCCATAG	.	110.0	29.0	98.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
IFNAR1	3454	hgsc.bcm.edu	hg19	21	34707892	34707892	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	IFNAR1	NM_000629	exon2	c.C139T	p.L47L	TTTATCCTGAGGT	.	112.0	45.0	111.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38865374	38865374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DYRK1A	NM_001396	exon7	c.T1007C	p.M336T	TGGGAATGCCTTA	.	83.0	34.0	65.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31331124	31331124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MORC2	NM_014941	exon20	c.C1651T	p.P551S	ACCGAGGACGCTG	.	90.0	43.0	98.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
OFD1	8481	hgsc.bcm.edu	hg19	X	13779314	13779314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OFD1	NM_003611	exon17	c.C2371A	p.P791T	AGCCCTCCGGAGC	.	44.0	40.0	29.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765164	66765164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	AR	NM_000044	exon1	c.A176T	p.Q59L	TGCAGCAGCAGCA	.	69.0	8.0	73.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9447	9447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	.	ENST00000362079	exon1	c.T241C	p.Y81H	CTTCGATACGGGA	.	26.0	8.0	2.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15756	15756	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	.	ENST00000361789	exon1	c.G1010A	p.W337X	TAACCTGAATCGG	.	29.0	8.0	3.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	hg19	10	100147000	100147001	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PYROXD2	NM_032709	exon14	c.1512_1513del	p.504_505del	.	.	96.0	46.0	120.0	0.0	.	43	.	0.479167	0	none	.	.	PASS	Atlas-Indel,Pindel
RARS	5917	hgsc.bcm.edu	hg19	5	167944991	167944992	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RARS	NM_002887	exon14	c.1797_1798insTA	p.D599fs	.	.	77.0	30.0	63.0	0.0	.	58	.	0.38961	0	none	.	.	PASS	Atlas-Indel,Pindel
SORCS3	22986	hgsc.bcm.edu	hg19	10	107016678	107016678	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	SORCS3	NM_014978	exon25	c.3438delT	p.F1146fs	.	.	38.0	15.0	51.0	0.0	.	282	.	0.394737	0	none	.	.	PASS	Atlas-Indel,Pindel
PDS5B	23047	hgsc.bcm.edu	hg19	13	33332296	33332298	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PDS5B	NM_015032	exon27	c.3127_3129del	p.1043_1043del	.	.	351.0	137.0	335.0	0.0	.	141	.	0.390313	0	none	.	.	PASS	Atlas-Indel,Pindel
XRN1	54464	hgsc.bcm.edu	hg19	3	142141761	142141764	+	Frame_Shift_Del	DEL	TACC	TACC	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	TACC	TACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	XRN1	NM_001042604	exon7	c.712_715del	p.238_239del	.	.	361.0	59.0	156.0	0.0	.	138	.	0.163435	0	none	.	.	PASS	Atlas-Indel,Pindel
DCLRE1B	64858	hgsc.bcm.edu	hg19	1	114450642	114450643	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DCLRE1B	NM_022836	exon3	c.367_368insA	p.Y123_T124delinsX	.	.	57.0	26.0	68.0	0.0	.	36	.	0.45614	0	none	.	.	PASS	Atlas-Indel,Pindel
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213302993	213302993	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	RPS6KC1	NM_012424	exon6	c.595delT	p.S199fs	.	.	71.0	23.0	42.0	0.0	.	114	.	0.323944	0	none	.	.	PASS	Atlas-Indel,Pindel
NUP214	8021	hgsc.bcm.edu	hg19	9	134073449	134073453	+	Frame_Shift_Del	DEL	CAGCC	CAGCC	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	CAGCC	CAGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	NUP214	NM_005085	exon29	c.4567_4571del	p.1523_1524del	.	.	76.0	34.0	88.0	0.0	.	166	.	0.447368	0	none	.	.	PASS	Atlas-Indel,Pindel
UQCRC2	7385	hgsc.bcm.edu	hg19	16	21974207	21974208	+	Splice_Site	INS	-	-	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	UQCRC2	NM_003366	exon6	c.514+1->T	.	.	.	62.0	34.0	53.0	0.0	.	46	.	0.548387	0	none	.	.	PASS	Atlas-Indel,Pindel
DSP	1832	hgsc.bcm.edu	hg19	6	7584626	7584627	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DSP	NM_004415	exon24	c.7131_7132insT	p.I2377fs	.	.	74.0	32.0	75.0	0.0	.	306	.	0.432432	0	none	.	.	PASS	Atlas-INDEL
DDX58	23586	hgsc.bcm.edu	hg19	9	32466289	32466289	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DDX58	NM_014314	exon16	c.2337delG	p.K779fs	.	.	32.0	13.0	39.0	0.0	.	82	.	0.40625	0	none	.	.	PASS	Atlas-Indel,Pindel
OGDHL	55753	hgsc.bcm.edu	hg19	10	50944091	50944100	+	Frame_Shift_Del	DEL	GGATGGTCAT	GGATGGTCAT	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	GGATGGTCAT	GGATGGTCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OGDHL	NM_018245	exon22	c.2879_2888del	p.960_963del	.	.	32.0	13.0	28.0	0.0	.	149	.	0.40625	0	none	.	.	PASS	Atlas-Indel,Pindel
OR5W2	390148	hgsc.bcm.edu	hg19	11	55682005	55682005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	OR5W2	NM_001001960	exon1	c.55delA	p.N19fs	.	.	81.0	33.0	82.0	0.0	.	112	.	0.407407	0	none	.	.	PASS	Atlas-Indel,Pindel
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143094459	143094459	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	HIVEP2	NM_006734	exon5	c.1418delA	p.D473fs	.	.	61.0	24.0	75.0	0.0	.	225	.	0.393443	0	none	.	.	PASS	Atlas-INDEL
MYH9	4627	hgsc.bcm.edu	hg19	22	36702564	36702570	+	Frame_Shift_Del	DEL	TGCGGAA	TGCGGAA	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	TGCGGAA	TGCGGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	MYH9	NM_002473	exon16	c.1928_1934del	p.643_645del	.	.	57.0	17.0	89.0	0.0	.	225	.	0.298246	0	none	.	.	PASS	Atlas-Indel,Pindel
FAM98B	283742	hgsc.bcm.edu	hg19	15	38776684	38776685	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	FAM98B	NM_173611	exon8	c.1126_1127insGGG	p.W376delinsWG	.	.	41.0	14.0	47.0	0.0	.	53	.	0.341463	0	none	.	.	PASS	Atlas-INDEL
IGFN1	91156	hgsc.bcm.edu	hg19	1	201174369	201174369	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	IGFN1	NM_001164586	exon11	c.1075delT	p.S359fs	.	.	122.0	46.0	122.0	0.0	.	220	.	0.377049	0	none	.	.	PASS	Atlas-Indel,Pindel
HSD17B14	51171	hgsc.bcm.edu	hg19	19	49316501	49316502	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	HSD17B14	NM_016246	exon9	c.744_745insG	p.G248fs	.	.	126.0	51.0	140.0	0.0	.	25	.	0.404762	0	none	.	.	PASS	Atlas-Indel,Pindel
TTC21A	199223	hgsc.bcm.edu	hg19	3	39175774	39175775	+	Frame_Shift_Ins	INS	-	-	TCCA	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TTC21A	NM_145755	exon21	c.2838_2839insTCCA	p.C946fs	.	.	82.0	36.0	84.0	0.0	.	96	.	0.439024	0	none	.	.	PASS	Atlas-INDEL
ENOSF1	55556	hgsc.bcm.edu	hg19	18	677380	677380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	ENOSF1,NS,lymphoid_neoplasm,0,1	ENOSF1	NM_202758	exon13	c.1135delG	p.D379fs	.	.	123.0	56.0	132.0	0.0	.	44	.	0.455285	0	none	.	.	PASS	Atlas-Indel,Pindel
DLK2	65989	hgsc.bcm.edu	hg19	6	43418926	43418926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DLK2	NM_206539	exon6	c.504delT	p.G168fs	.	.	110.0	51.0	137.0	0.0	.	22	.	0.463636	0	none	.	.	PASS	Atlas-Indel,Pindel
PARD3B	117583	hgsc.bcm.edu	hg19	2	205550903	205550903	+	Splice_Site	DEL	G	G	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	PARD3B	NM_057177	exon2	c.121-2G>-	.	.	.	103.0	25.0	58.0	0.0	.	314	.	0.242718	0	none	.	.	PASS	Atlas-Indel,Pindel
DYSF	8291	hgsc.bcm.edu	hg19	2	71740432	71740437	+	In_Frame_Del	DEL	TACTCT	TACTCT	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	TACTCT	TACTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	DYSF	NM_001130987	exon6	c.522_527del	p.174_176del	.	.	156.0	38.0	206.0	0.0	.	536	.	0.24359	0	none	.	.	PASS	Atlas-Indel,Pindel
TTC21A	199223	hgsc.bcm.edu	hg19	3	39175775	39175776	+	Frame_Shift_Ins	INS	-	-	CCAT	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	TTC21A	NM_145755	exon21	c.2839_2840insCCAT	p.A947fs	.	.	81.0	25.0	84.0	0.0	.	96	.	0.309	.	none	.	.	PASS	Pindel
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143094459	143094460	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2Z-A9J3-01A-12D-A382-10	TCGA-2Z-A9J3-10A-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	32cc4455-b4d6-47b7-8121-6a41d2f6aec3	72bef80f-14ac-48e0-b629-117038e12a5c	.	HIVEP2	NM_006734	exon5	c.1417_1418del	p.473_473del	.	.	62.0	14.0	76.0	0.0	.	225	.	0.226	.	none	.	.	PASS	Pindel
