Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZBTB48	3104	hgsc.bcm.edu	hg19	1	6640799	6640799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ZBTB48	NM_005341	exon2	c.C130T	p.L44F	AGTGTCCTTGCCT	.	131.0	59.0	143.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
NIPAL3	57185	hgsc.bcm.edu	hg19	1	24782759	24782759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NIPAL3	NM_020448	exon8	c.G769A	p.A257T	TATCAGGCTGCGT	.	45.0	18.0	56.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
MAN1C1	57134	hgsc.bcm.edu	hg19	1	26107539	26107539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MAN1C1	NM_020379	exon10	c.A1586G	p.Y529C	AGAGCTACATGTA	.	117.0	44.0	130.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MED18	54797	hgsc.bcm.edu	hg19	1	28661029	28661029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MED18	NM_017638	exon3	c.C175A	p.L59I	GTATTCCTCCTTA	.	70.0	22.0	64.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	hg19	1	113933805	113933805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MAGI3	NM_152900	exon1	c.G150C	p.E50D	CCGCGAGGAGCCC	.	89.0	33.0	105.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	hg19	1	116228127	116228127	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	VANGL1	NM_138959	exon7	c.C1293T	p.I431I	CTGCATCACCAAC	.	103.0	32.0	126.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
LOR	4014	hgsc.bcm.edu	hg19	1	153233991	153233991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	LOR	NM_000427	exon2	c.A566G	p.Y189C	GCGGCTACTCTGG	.	9.0	4.0	7.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
MEF2D	4209	hgsc.bcm.edu	hg19	1	156444934	156444934	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MEF2D	NM_005920	exon9	c.C972T	p.L324L	GAAGGGGAGGCCC	.	73.0	30.0	91.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF8	93185	hgsc.bcm.edu	hg19	1	160063548	160063548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	IGSF8	NM_052868	exon3	c.A856C	p.I286L	CTGCAATCTGGGC	.	46.0	16.0	50.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
UAP1	6675	hgsc.bcm.edu	hg19	1	162551113	162551113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	UAP1	NM_003115	exon5	c.A698G	p.Q233R	CAGCCCAGAATAT	.	99.0	37.0	127.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
RGL1	23179	hgsc.bcm.edu	hg19	1	183775571	183775571	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	RGL1	NM_015149	exon3	c.A195G	p.K65K	CCTCAAAAGAGTC	.	54.0	20.0	76.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1507790	1507790	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TPO	NM_001206744	exon14	c.C2457T	p.G819G	CAAAGGCGGCTTC	.	46.0	9.0	56.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
ODC1	4953	hgsc.bcm.edu	hg19	2	10584694	10584694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ODC1	NM_002539	exon4	c.G182C	p.R61P	GTGACACGAGGGA	.	78.0	26.0	78.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21266783	21266783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	APOB	NM_000384	exon1	c.T35C	p.L12P	AGCGCCAGCAGCG	.	19.0	4.0	30.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61415653	61415653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	USP34	NM_014709	exon80	c.A10225T	p.N3409Y	AACTATTTTCAGG	.	121.0	39.0	131.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM237	65062	hgsc.bcm.edu	hg19	2	202507331	202507331	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TMEM237	NM_152388	exon2	c.18+1G>C	.	CGCTTACCACAGG	.	133.0	43.0	155.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
TIGD1	200765	hgsc.bcm.edu	hg19	2	233414485	233414485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TIGD1	NM_145702	exon1	c.A108G	p.I36M	TCGGCCTATCTCG	.	83.0	5.0	98.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234621902	234621902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	UGT1A5	NM_019078	exon1	c.T265A	p.F89I	GACGAATTTGATC	.	75.0	35.0	106.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	hg19	3	42240711	42240711	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TRAK1	NM_001265608	exon11	c.C1156T	p.L386L	AAGGAGCTGCAGT	.	85.0	36.0	124.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47163553	47163553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	SETD2	NM_014159	exon3	c.G2573C	p.S858T	CTAGTGCTACCGA	.	55.0	20.0	63.0	0.0	.	721	.	.	.	none	.	.	PASS	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113115478	113115478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	WDR52	NM_001164496	exon14	c.G1666A	p.G556R	TCCGTCCCGCAAA	.	79.0	35.0	125.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
ADPRH	141	hgsc.bcm.edu	hg19	3	119305359	119305359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	ADPRH,NS,carcinoma,0,1	ADPRH	NM_001125	exon4	c.G526A	p.A176T	GCGTCTGCTCTTT	.	65.0	27.0	74.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MBD4	8930	hgsc.bcm.edu	hg19	3	129152076	129152076	+	Missense_Mutation	SNP	G	G	T	rs376050040	alternate_allele	TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MBD4	NM_003925	exon6	c.C1426A	p.P476T	GCACAGGTATTGC	.	83.0	33.0	82.0	0.0	.	53	.	.	.	alt	.	.	PASS	Atlas-SNP
NOP14	8602	hgsc.bcm.edu	hg19	4	2956275	2956275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NOP14	NM_003703	exon4	c.C488A	p.A163D	AAGTGGGCAGCAG	.	21.0	7.0	32.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	CAATGAAAGCAGC	.	294.0	34.0	334.0	0.0	.	174	.	.	.	weak	A|0.500;C|0.500	0.500	PASS	Atlas-SNP
TAF9	6880	hgsc.bcm.edu	hg19	5	68661336	68661336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TAF9	NM_003187	exon3	c.T229C	p.C77R	CGCGGCACTGGAT	.	73.0	28.0	110.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140573697	140573697	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PCDHB10	NM_018930	exon1	c.G1572C	p.L524L	GGCCCTGCAGGCT	.	114.0	38.0	138.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140810981	140810981	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PCDHGA12	NM_032094	exon1	c.G655C	p.D219H	GGGGGCGACCCGG	.	61.0	20.0	74.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
RARS2	57038	hgsc.bcm.edu	hg19	6	88229389	88229389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	RARS2	NM_020320	exon14	c.G1149A	p.M383I	AGTCTTCATTCCC	.	130.0	52.0	117.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
AP5Z1	9907	hgsc.bcm.edu	hg19	7	4827394	4827394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	.	NM_014855	exon11	c.G1441T	p.D481Y	GTGCTGGACCTGC	.	46.0	12.0	24.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF212	7988	hgsc.bcm.edu	hg19	7	148947362	148947362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ZNF212	NM_012256	exon2	c.C137A	p.A46D	TGGTGGCCGCTAT	.	127.0	65.0	128.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113303751	113303751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	CSMD3	NM_198123	exon56	c.C8962A	p.P2988T	ATTCTGGTAAAGG	.	103.0	29.0	92.0	0.0	.	2325	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84606600	84606600	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	FAM75D4,rectum,carcinoma,0,2	.	NM_001001670	exon4	c.A1215T	p.S405S	CATCTCATTTCTC	.	107.0	7.0	116.0	1.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114538143	114538143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	C9orf84	NM_173521	exon3	c.A178G	p.M60V	AGTCCATGTGGGT	.	121.0	48.0	140.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116345868	116345868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	RGS3	NM_144488	exon21	c.A2176G	p.K726E	CCCAACAAGGACT	.	81.0	29.0	79.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
RXRA	6256	hgsc.bcm.edu	hg19	9	137323760	137323760	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	RXRA	NM_002957	exon8	c.G1053T	p.T351T	GCTGACGGAGCTT	.	77.0	21.0	89.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM254	80195	hgsc.bcm.edu	hg19	10	81850575	81850575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	C10orf57,NS,carcinoma,0,1	TMEM254	NM_001270367	exon4	c.C346T	p.R116W	AGTGGTCGGGCTC	.	52.0	22.0	62.0	0.0	.	1	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A28	81894	hgsc.bcm.edu	hg19	10	101379882	101379882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	SLC25A28	NM_031212	exon1	c.A211T	p.T71S	TGACAGTGGCTCC	.	19.0	6.0	26.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102265129	102265129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	SEC31B	NM_015490	exon10	c.G1168T	p.V390F	ATGAAACACCTGT	.	58.0	19.0	81.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	993296	993296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	AP2A2	NM_001242837	exon12	c.C1468T	p.P490S	CAGGCTCCCGCGT	.	44.0	12.0	48.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7660962	7660962	+	Splice_Site	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PPFIBP2	NM_003621	exon15	c.1237-1G>A	.	CCAATAGGACAGC	.	109.0	42.0	135.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	19854129	19854129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NAV2	NM_145117	exon2	c.C367G	p.Q123E	CTGGCCCAGATTA	.	27.0	8.0	45.0	0.0	.	255	.	.	.	none	.	.	PASS	Atlas-SNP
GPHA2	170589	hgsc.bcm.edu	hg19	11	64702479	64702479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	GPHA2	NM_130769	exon3	c.T272C	p.I91T	CCACTGATGGTGC	.	64.0	24.0	77.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
NPAS4	266743	hgsc.bcm.edu	hg19	11	66190646	66190646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NPAS4	NM_178864	exon5	c.T751G	p.Y251D	TCATGGTATGGAC	.	58.0	23.0	90.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
CARNS1	57571	hgsc.bcm.edu	hg19	11	67186483	67186483	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	CARNS1	NM_001166222	exon5	c.C621G	p.A207A	GCTGGCCCGGCTG	.	41.0	18.0	45.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	hg19	11	111229622	111229622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	POU2AF1	NM_006235	exon2	c.C38T	p.P13L	GGGGCTGGGGCTT	.	34.0	8.0	58.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
PFKM	5213	hgsc.bcm.edu	hg19	12	48536588	48536588	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PFKM	NM_001166686	exon20	c.A1890T	p.S630S	GCAGTCAGCAGCT	.	117.0	65.0	97.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
KRT80	144501	hgsc.bcm.edu	hg19	12	52565443	52565443	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	KRT80	NM_182507	exon8	c.C1233T	p.T411T	CTCACCGGTTTTG	.	169.0	88.0	169.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1A	4640	hgsc.bcm.edu	hg19	12	57431392	57431392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MYO1A	NM_005379	exon19	c.C1995A	p.S665R	GGACATGCTCAGC	.	88.0	23.0	77.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	71016216	71016216	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PTPRB	NM_001109754	exon3	c.C662A	p.S221X	ACCCATGATGTGT	.	90.0	44.0	60.0	0.0	.	676	.	.	.	none	.	.	PASS	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	hg19	12	112478370	112478370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NAA25	NM_024953	exon21	c.A2453T	p.K818I	TTACATTTACTGA	.	89.0	51.0	51.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	hg19	12	112499043	112499043	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NAA25	NM_024953	exon12	c.T1299C	p.N433N	TTTCTGATTTTTA	.	48.0	23.0	60.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132547068	132547068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	EP400,NS,carcinoma,0,2	EP400	NM_015409	exon47	c.G8156A	p.R2719K	TTCTCAGGCAGCA	.	108.0	8.0	67.0	1.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
MEDAG	84935	hgsc.bcm.edu	hg19	13	31495803	31495803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	.	NM_032849	exon4	c.G607T	p.D203Y	TTATTTGATTTCT	.	106.0	10.0	118.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39263022	39263022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	FREM2	NM_207361	exon1	c.C1541T	p.A514V	TGGCAGCCGGCCA	.	37.0	19.0	70.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
PHF11	51131	hgsc.bcm.edu	hg19	13	50087269	50087269	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PHF11	NM_001040443	exon3	c.A291C	p.S97S	GGAATCAGTAAAG	.	35.0	7.0	63.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	hg19	14	59006809	59006809	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	KIAA0586	NM_001244189	exon32	c.C4609A	p.R1537R	ATGGATCGGACAC	.	99.0	39.0	134.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71514621	71514621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PCNX	NM_014982	exon22	c.C4258A	p.L1420M	ACTGTGCTGTTTT	.	71.0	30.0	58.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	hg19	14	76156649	76156649	+	Missense_Mutation	SNP	G	G	C	rs374680809	alternate_allele	TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TTLL5	NM_015072	exon6	c.G486C	p.E162D	AGCTGAGTACGCG	.	59.0	27.0	105.0	0.0	.	102	.	.	.	alt	.	.	PASS	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43023515	43023515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	CDAN1	NM_138477	exon12	c.A1754G	p.Q585R	AGATGCTGGTTAA	.	41.0	18.0	56.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62277127	62277127	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	VPS13C	NM_020821	exon19	c.A1650G	p.P550P	TATTTCTGGAATA	.	338.0	122.0	344.0	0.0	.	506	.	.	.	none	.	.	PASS	Atlas-SNP
HAGH	3029	hgsc.bcm.edu	hg19	16	1869933	1869933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.,1	HAGH	NM_005326	exon4	c.C397A	p.L133M	GAGTCAGGGCCCC	.	62.0	18.0	80.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG4	25894	hgsc.bcm.edu	hg19	16	67320229	67320229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PLEKHG4	NM_001129728	exon15	c.A2495T	p.D832V	GCTCCGATGCCCT	.	54.0	20.0	65.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1564944	1564944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PRPF8	NM_006445	exon26	c.A4163C	p.E1388A	GCGTACTCAGCCC	.	44.0	16.0	76.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A11	162515	hgsc.bcm.edu	hg19	17	6945476	6945476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	SLC16A11	NM_153357	exon3	c.T1025C	p.L342P	GCCAGCAGGGGAC	.	56.0	18.0	63.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
LSMD1	84316	hgsc.bcm.edu	hg19	17	7760532	7760532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	LSMD1	NM_032356	exon1	c.G210T	p.L70F	GTGTAACAAGCGC	.	43.0	18.0	49.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
DSC1	1823	hgsc.bcm.edu	hg19	18	28712612	28712612	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	DSC1	NM_004948	exon14	c.A2157G	p.T719T	CTTGACTGTTCTC	.	45.0	16.0	47.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
AMH	268	hgsc.bcm.edu	hg19	19	2251466	2251466	+	Missense_Mutation	SNP	C	C	T	rs368933314	alternate_allele	TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	AMH	NM_000479	exon5	c.C1193T	p.P398L	TGCCTCCGGCCAC	.	6.0	4.0	1.0	0.0	.	12	.	.	.	alt	.	.	PASS	Atlas-SNP
LRG1	116844	hgsc.bcm.edu	hg19	19	4538577	4538577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	LRG1	NM_052972	exon2	c.C419G	p.A140G	AGGGTGGCTGAGG	.	33.0	14.0	39.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10085009	10085009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	COL5A3	NM_015719	exon46	c.T3418A	p.F1140I	CCACAAAGCCTCT	.	115.0	44.0	120.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
PDE4A	5141	hgsc.bcm.edu	hg19	19	10578237	10578237	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PDE4A	NM_001111307	exon15	c.G2601T	p.G867G	ATTTGGGGAGGAC	.	52.0	19.0	42.0	0.0	.	236	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	hg19	19	18001737	18001737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	SLC5A5,NS,NS,0,1	SLC5A5	NM_000453	exon14	c.G1694T	p.W565L	TGTGGTGGGACCT	.	48.0	17.0	52.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941432	22941432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ZNF99	NM_001080409	exon4	c.T1279G	p.C427G	CTTCACATTTGCA	.	44.0	21.0	40.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF529	57711	hgsc.bcm.edu	hg19	19	37038656	37038656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ZNF529	NM_001145649	exon6	c.A804C	p.K268N	AGTAACTTTTCCA	.	60.0	26.0	69.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN12	147968	hgsc.bcm.edu	hg19	19	39233092	39233092	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	CAPN12	NM_144691	exon3	c.A384T	p.G128G	ATCCTGTCCAGGA	.	265.0	101.0	289.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R1A	5518	hgsc.bcm.edu	hg19	19	52714553	52714553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PPP2R1A	NM_014225	exon4	c.T311G	p.V104G	CAGTGGTGCGGGA	.	69.0	33.0	76.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
TMC4	147798	hgsc.bcm.edu	hg19	19	54667538	54667538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TMC4	NM_001145303	exon8	c.T1213G	p.F405V	GCACAAAATTGAC	.	129.0	45.0	115.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
CENPB	1059	hgsc.bcm.edu	hg19	20	3766089	3766089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	CENPB	NM_001810	exon1	c.G1042A	p.A348T	CTAGCGCGGCCAT	.	75.0	30.0	61.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16486456	16486456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	KIF16B	NM_001199865	exon9	c.A911T	p.K304M	ACTTGCTTCTTCT	.	84.0	32.0	117.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
B4GALT5	9334	hgsc.bcm.edu	hg19	20	48260082	48260082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	B4GALT5	NM_004776	exon4	c.A470C	p.D157A	ATGCAATCAGAAG	.	98.0	29.0	133.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62190711	62190711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	.	NM_001037335	exon20	c.T7838C	p.L2613P	CGCAGAAGGAGGT	.	64.0	30.0	74.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFV3	4731	hgsc.bcm.edu	hg19	21	44324023	44324023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	NDUFV3	NM_021075	exon3	c.G901T	p.A301S	TTGTCTGCGCCAC	.	87.0	28.0	103.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45773684	45773684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TRPM2	NM_003307	exon1	c.G101A	p.R34Q	ATCTCCGGCGCAG	.	117.0	50.0	132.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
SUMO3	6612	hgsc.bcm.edu	hg19	21	46226870	46226870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	SUMO3	NM_006936	exon4	c.T308G	p.F103C	CTCTAGAAACTGT	.	52.0	23.0	56.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
GNAZ	2781	hgsc.bcm.edu	hg19	22	23465473	23465473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	GNAZ	NM_002073	exon3	c.T923C	p.F308S	GGCAGTTTGAAGA	.	76.0	34.0	87.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40521834	40521834	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	TNRC6B	NM_001024843	exon3	c.G13T	p.E5X	ACCAATGAGGGAG	.	122.0	44.0	142.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46658026	46658026	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PKDREJ	NM_006071	exon1	c.C1194A	p.V398V	GTGACAGACTTCC	.	83.0	39.0	91.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	hg19	22	50528560	50528560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	MOV10L1	NM_018995	exon1	c.A43T	p.T15S	TGGAGGACGGCGG	.	47.0	9.0	43.0	0.0	.	238	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1B4	23439	hgsc.bcm.edu	hg19	X	119504978	119504978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ATP1B4	NM_001142447	exon4	c.T475C	p.F159L	AGACCCTTCGCCC	.	40.0	35.0	72.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
FKBP1B	2281	hgsc.bcm.edu	hg19	2	24283781	24283782	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	FKBP1B	NM_004116	exon3	c.182_183del	p.61_61del	.	.	73.0	22.0	106.0	0.0	.	11	.	0.30137	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF469	84627	hgsc.bcm.edu	hg19	16	88499104	88499104	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	ZNF469	NM_001127464	exon2	c.5141delG	p.S1714fs	.	.	56.0	26.0	71.0	0.0	.	121	.	0.464286	0	none	.	.	PASS	Atlas-Indel,Pindel
PMS2	5395	hgsc.bcm.edu	hg19	7	6018319	6018320	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PMS2	NM_000535	exon13	c.2183_2184del	p.728_728del	.	.	517.0	183.0	226.0	0.0	.	88	.	0.353965	0	none	.	.	PASS	Atlas-INDEL
WSCD1	23302	hgsc.bcm.edu	hg19	17	6023951	6023951	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	WSCD1	NM_015253	exon9	c.1697delC	p.T566fs	.	.	35.0	13.0	55.0	0.0	.	84	.	0.371429	0	none	.	.	PASS	Atlas-Indel,Pindel
PDE4A	5141	hgsc.bcm.edu	hg19	19	10572554	10572554	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	PDE4A	NM_001111307	exon13	c.1621delG	p.V541fs	.	.	57.0	21.0	33.0	0.0	.	236	.	0.368421	0	none	.	.	PASS	Atlas-Indel,Pindel
INPP5F	22876	hgsc.bcm.edu	hg19	10	121567442	121567445	+	Splice_Site	DEL	TAGC	TAGC	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	TAGC	TAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	INPP5F	.	.	.	.	.	.	53.0	17.0	91.0	0.0	.	112	.	0.320755	0	none	.	.	PASS	Atlas-INDEL
WDR91	29062	hgsc.bcm.edu	hg19	7	134890789	134890789	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	WDR91	NM_014149	exon5	c.617delT	p.I206fs	.	.	140.0	59.0	147.0	0.0	.	82	.	0.421	.	none	.	.	PASS	Pindel
FRMPD2	143162	hgsc.bcm.edu	hg19	10	49380990	49380999	+	Frame_Shift_Del	DEL	ATCTGTCACT	ATCTGTCACT	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	ATCTGTCACT	ATCTGTCACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	FRMPD2	NM_001018071	exon25	c.3214_3223del	p.1072_1075del	.	.	493.0	23.0	589.0	0.0	.	157	.	0.047	.	none	.	.	PASS	Pindel
INPP5F	22876	hgsc.bcm.edu	hg19	10	121567442	121567447	+	Splice_Site	DEL	TTTAGC	TTTAGC	-	novel		TCGA-2Z-A9JL-01A-11D-A42J-10	TCGA-2Z-A9JL-10A-01D-A42M-10	TTTAGC	TTTAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d76bb38d-3ef3-4a37-bc21-5b7bc290d112	27a1d440-82fb-44f6-b007-5ad71c7b4cc1	.	INPP5F	.	.	.	.	.	.	54.0	12.0	94.0	0.0	.	112	.	0.222	.	none	.	.	PASS	Pindel
