Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SDF4	51150	hgsc.bcm.edu	hg19	1	1163850	1163850	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SDF4	NM_016547	exon2	c.C324A	p.S108S	CTACTTGGAAAAG	.	48.0	14.0	49.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
KNCN	148930	hgsc.bcm.edu	hg19	1	47014904	47014904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	KNCN	NM_001097611	exon2	c.C187A	p.H63N	CCCCGTGGTCTGC	.	101.0	30.0	113.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
KNCN	148930	hgsc.bcm.edu	hg19	1	47014905	47014905	+	Missense_Mutation	SNP	G	G	C	rs191194559	bycluster;by1000genomes;alternate_allele	TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	KNCN	NM_001097611	exon2	c.C186G	p.D62E	CCCGTGGTCTGCC	.	101.0	30.0	113.0	0.0	.	7	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
SLC44A3	126969	hgsc.bcm.edu	hg19	1	95323000	95323000	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SLC44A3	NM_001114106	exon10	c.C1182A	p.I394I	ATTCATCCTTGCG	.	114.0	32.0	121.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	hg19	1	116206833	116206833	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	VANGL1	NM_138959	exon4	c.G756T	p.L252L	CACGCTGCAGGTG	.	39.0	4.0	36.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
LCE2B	26239	hgsc.bcm.edu	hg19	1	152659505	152659505	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	LCE2B	NM_014357	exon2	c.C186T	p.G62G	TGGGGGCTGCTGC	.	115.0	42.0	110.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ISG20L2	81875	hgsc.bcm.edu	hg19	1	156696838	156696838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ISG20L2	NM_030980	exon1	c.A607G	p.I203V	TGACAATGCTACA	.	91.0	27.0	93.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SMG7	9887	hgsc.bcm.edu	hg19	1	183520232	183520232	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SMG7	NM_001174061	exon21	c.C3231T	p.S1077S	TGAGAGCAGTTGG	.	112.0	28.0	154.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
DHX57	90957	hgsc.bcm.edu	hg19	2	39050399	39050399	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	DHX57	NM_198963	exon17	c.A3027G	p.L1009L	CATCTCTAAAATT	.	74.0	27.0	81.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
THADA	63892	hgsc.bcm.edu	hg19	2	43519255	43519255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	THADA	NM_001083953	exon33	c.C4925G	p.A1642G	TTGGAAGCAATAT	.	84.0	28.0	90.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
CWC22	57703	hgsc.bcm.edu	hg19	2	180842978	180842978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CWC22	NM_020943	exon6	c.A520C	p.N174H	AAATGTTGACTTT	.	171.0	63.0	115.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
GLS	2744	hgsc.bcm.edu	hg19	2	191797583	191797583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	GLS	NM_001256310	exon15	c.A1792G	p.S598G	GAGAAAAGCTAAA	.	66.0	27.0	51.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
IL17RC	84818	hgsc.bcm.edu	hg19	3	9974800	9974800	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	IL17RC	NM_153461	exon19	c.G1899C	p.W633C	GGCTTGGTTTCAC	.	39.0	11.0	26.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
TIGIT	201633	hgsc.bcm.edu	hg19	3	114026767	114026767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	TIGIT	NM_173799	exon4	c.T524G	p.V175G	ATTCTGTGGAAGG	.	137.0	36.0	172.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
TIMMDC1	51300	hgsc.bcm.edu	hg19	3	119222809	119222809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	TIMMDC1	NM_016589	exon4	c.A458G	p.N153S	CAGTGAACACTAG	.	55.0	13.0	44.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125854448	125854448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ALDH1L1	NM_001270364	exon12	c.G1432A	p.A478T	CCTTGGCTGCGGC	.	38.0	12.0	26.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
CCRL1	51554	hgsc.bcm.edu	hg19	3	132319326	132319326	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	CCRL1,NS,carcinoma,0,2	CCRL1	NM_178445	exon1	c.C85T	p.L29L	TATGAACTGATCT	.	231.0	11.0	240.0	1.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
RASSF6	166824	hgsc.bcm.edu	hg19	4	74459297	74459297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	RASSF6	NM_201431	exon4	c.A254T	p.K85I	ATTAGTTTGCCAT	.	83.0	26.0	57.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5469021	5469021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	KIAA0947	NM_015325	exon15	c.A6142G	p.K2048E	ATTAATAAAGCAA	.	87.0	27.0	99.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13894791	13894791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	DNAH5	NM_001369	exon16	c.A2399T	p.E800V	TAAGCCTCAATAT	.	66.0	16.0	103.0	0.0	.	868	.	.	.	none	.	.	PASS	Atlas-SNP
SPATS1	221409	hgsc.bcm.edu	hg19	6	44320474	44320474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SPATS1	NM_145026	exon3	c.A151G	p.S51G	AATTGCAGTGATT	.	99.0	32.0	46.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35A1	10559	hgsc.bcm.edu	hg19	6	88187175	88187175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SLC35A1	NM_006416	exon2	c.G112T	p.D38Y	ACATCAGACAAAG	.	88.0	41.0	79.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107823350	107823350	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	NRCAM	NM_001037132	exon20	c.C2319T	p.F773F	AGATTCGAAACCA	.	120.0	31.0	94.0	0.0	.	267	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO16	157574	hgsc.bcm.edu	hg19	8	28331306	28331306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	FBXO16	NM_172366	exon3	c.G118A	p.A40T	GCAGGGCTCTTCT	.	257.0	80.0	206.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
CCL27	10850	hgsc.bcm.edu	hg19	9	34662362	34662362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CCL27	NM_006664	exon2	c.C122T	p.P41L	GAGAGTGGCTTTC	.	62.0	20.0	60.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	hg19	10	52003053	52003053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ASAH2	NM_019893	exon3	c.G419A	p.R140H	AAGGCACGACTGT	.	62.0	22.0	94.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770293	102770293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PDZD7	NM_001195263	exon15	c.A2353C	p.S785R	CCCGGCTGCTGCG	.	409.0	18.0	356.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103900243	103900243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PPRC1	NM_015062	exon5	c.C1978T	p.P660S	GCTGTCCCGTCTG	.	64.0	27.0	47.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	hg19	11	5364556	5364556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	OR51B5	NM_001005567	exon5	c.A199C	p.T67P	GGTCTGTGGCAGC	.	54.0	7.0	41.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
OR51B5	282763	hgsc.bcm.edu	hg19	11	5364558	5364558	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	OR51B5	NM_001005567	exon5	c.C197G	p.A66G	TCTGTGGCAGCCA	.	57.0	8.0	41.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SPDYC	387778	hgsc.bcm.edu	hg19	11	64940189	64940189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SPDYC	NM_001008778	exon6	c.C551A	p.T184N	CTTGGACTCGGGA	.	41.0	13.0	18.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66472844	66472844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	SPTBN2,NS,carcinoma,0,1	SPTBN2	NM_006946	exon14	c.G1903A	p.A635T	GCCGGGCCCGCCG	.	84.0	31.0	92.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
FKBP4	2288	hgsc.bcm.edu	hg19	12	2907930	2907930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	FKBP4	NM_002014	exon4	c.T452C	p.I151T	GAATCATTCGCAG	.	125.0	31.0	86.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26572030	26572030	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ITPR2	NM_002223	exon50	c.G7062T	p.L2354L	GCAAACCAGGACA	.	125.0	6.0	109.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
AMIGO2	347902	hgsc.bcm.edu	hg19	12	47471993	47471993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	AMIGO2	NM_181847	exon2	c.G793C	p.D265H	TGGAGTCAGACCA	.	125.0	34.0	135.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	KRT3,rectum,carcinoma,0,2	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	116.0	18.0	93.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183979	53183979	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	KRT3	NM_057088	exon9	c.C1734T	p.G578G	GCTGCCGCCGCCA	.	123.0	15.0	106.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80214604	80214604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PPP1R12A	NM_002480	exon8	c.G1064A	p.C355Y	CTAGAGCAGCTAG	.	48.0	12.0	36.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112654883	112654883	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	.	NM_001109662	exon46	c.G6789A	p.L2263L	CCGGGGCAGGCCT	.	345.0	144.0	250.0	1.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
LPAR6	10161	hgsc.bcm.edu	hg19	13	48986185	48986185	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	LPAR6	NM_001162497	exon5	c.G375C	p.K125N	TAGAGTCTTTGAC	.	60.0	23.0	38.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT16	57452	hgsc.bcm.edu	hg19	14	69792741	69792741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	GALNT16	NM_001168368	exon5	c.G565A	p.E189K	CGGCGGGAAGGTG	.	54.0	15.0	64.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91389482	91389482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	RPS6KA5_ENST00000261991,NS,carcinoma,0,1	RPS6KA5	NM_182398	exon6	c.G677A	p.R226K	CCCCCTCTGACAA	.	69.0	22.0	78.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR10	54893	hgsc.bcm.edu	hg19	15	31253167	31253167	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	MTMR10	NM_017762	exon7	c.G675C	p.S225S	CCAATCCGAGTAA	.	21.0	5.0	32.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	hg19	15	56142779	56142779	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	NEDD4	NM_198400	exon7	c.G2349A	p.R783R	GAAAGGCCTCCCA	.	137.0	55.0	110.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
PARP6	56965	hgsc.bcm.edu	hg19	15	72533806	72533806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PARP6	NM_020214	exon23	c.A1883C	p.Y628S	TTTGTGTAAACCT	.	45.0	14.0	60.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1268646	1268646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CACNA1H	NM_021098	exon33	c.C5882T	p.P1961L	GCACCCCCTTGGG	.	109.0	29.0	65.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
SETD6	79918	hgsc.bcm.edu	hg19	16	58552019	58552019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SETD6	NM_001160305	exon6	c.G857T	p.G286V	CTTATGGGCAAAT	.	106.0	5.0	129.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
BCAR1	9564	hgsc.bcm.edu	hg19	16	75263502	75263502	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	BCAR1	NM_001170714	exon8	c.T2658A	p.P886P	CGCGGAAGGCGAT	.	69.0	28.0	74.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
PHF12	57649	hgsc.bcm.edu	hg19	17	27234650	27234650	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PHF12	NM_001033561	exon13	c.T2499A	p.C833X	GTAGTTACAGTGA	.	59.0	11.0	57.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48703733	48703733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CACNA1G	NM_018896	exon38	c.A6755G	p.Q2252R	AGGCCCAGAGCTG	.	129.0	31.0	71.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
CHMP1B	57132	hgsc.bcm.edu	hg19	18	11852058	11852058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CHMP1B	NM_020412	exon1	c.C548A	p.A183E	CTTCGGCGGAGCA	.	33.0	10.0	43.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
TNPO2	30000	hgsc.bcm.edu	hg19	19	12816354	12816354	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	TNPO2	NM_013433	exon16	c.C1815A	p.V605V	CTGGTAGACGGGC	.	128.0	45.0	99.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	hg19	19	39663570	39663570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	PAK4	NM_001014832	exon3	c.G217C	p.G73R	GTGCGGGGCAGCA	.	122.0	45.0	130.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
RABAC1	10567	hgsc.bcm.edu	hg19	19	42463044	42463044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	RABAC1	NM_006423	exon2	c.G113A	p.R38H	GCGCGGCGCCGCT	.	54.0	18.0	59.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20243776	20243776	+	Splice_Site	SNP	T	T	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	C20orf26	NM_015585	exon21	c.2503+2T>A	.	AGAAGGTAAGGAT	.	125.0	22.0	95.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
SDC4	6385	hgsc.bcm.edu	hg19	20	43964542	43964542	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	SDC4	NM_002999	exon2	c.A79C	p.I27L	GGTCGATGACCTC	.	39.0	26.0	4.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44588028	44588028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ZNF335	NM_022095	exon15	c.C2065A	p.H689N	TCTTGTGCCGTGT	.	76.0	23.0	86.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
ARFRP1	10139	hgsc.bcm.edu	hg19	20	62331971	62331971	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ARFRP1	NM_001134758	exon7	c.C501G	p.A167A	CGAGCAGGCCTGG	.	64.0	18.0	51.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445610	29445610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ZNRF3	NM_001206998	exon8	c.G1441A	p.E481K	TACCCGGAGCAGG	.	40.0	10.0	48.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYM3	9203	hgsc.bcm.edu	hg19	X	70472532	70472532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ZMYM3	NM_005096	exon2	c.A574G	p.S192G	AAGGGCTAGGCGG	.	69.0	45.0	60.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC8	55869	hgsc.bcm.edu	hg19	X	71792527	71792527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	HDAC8	NM_018486	exon1	c.G85C	p.D29H	GGGAGTCACACAT	.	40.0	23.0	93.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14387	14387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	.	ENST00000361681	exon1	c.T287C	p.L96S	ATCGCTAACCCCA	.	28.0	26.0	11.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74502420	74502421	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	CD109	NM_001159587	exon23	c.2773_2774insAC	p.N925fs	.	.	40.0	14.0	70.0	0.0	.	170	.	0.35	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC5B	727897	hgsc.bcm.edu	hg19	11	1272670	1272678	+	In_Frame_Del	DEL	ATAGCCACC	ATAGCCACC	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	ATAGCCACC	ATAGCCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	MUC5B	NM_002458	exon31	c.14559_14567del	p.4853_4856del	.	.	96.0	14.0	130.0	0.0	.	473	.	0.145833	0	none	.	.	PASS	Atlas-INDEL
BEST1	7439	hgsc.bcm.edu	hg19	11	61724395	61724396	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	BEST1	NM_004183	exon5	c.561_562insT	p.W187fs	.	.	69.0	19.0	61.0	0.0	.	85	.	0.275362	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF225	7768	hgsc.bcm.edu	hg19	19	44635280	44635280	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	ZNF225	NM_013362	exon5	c.512delC	p.S171X	.	.	89.0	11.0	75.0	0.0	.	41	.	0.123596	0	none	.	.	PASS	Atlas-Indel,Pindel
LPO	4025	hgsc.bcm.edu	hg19	17	56332255	56332255	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	LPO	NM_006151	exon9	c.1188delA	p.E396fs	.	.	81.0	38.0	107.0	0.0	.	73	.	0.469136	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC5B	727897	hgsc.bcm.edu	hg19	11	1272664	1272668	+	Frame_Shift_Del	DEL	AGCAC	AGCAC	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	AGCAC	AGCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	MUC5B	NM_002458	exon31	c.14553_14557del	p.4851_4853del	.	.	93.0	14.0	129.0	0.0	.	473	.	0.150538	0	none	.	.	PASS	Atlas-INDEL
IGF1R	3480	hgsc.bcm.edu	hg19	15	99500486	99500513	+	Frame_Shift_Del	DEL	CCCTCGGCCTCCTCGTCCTCCCTGCCAC	CCCTCGGCCTCCTCGTCCTCCCTGCCAC	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	CCCTCGGCCTCCTCGTCCTCCCTGCCAC	CCCTCGGCCTCCTCGTCCTCCCTGCCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	IGF1R	NM_000875	exon21	c.3918_3945del	p.1306_1315del	.	.	71.0	13.0	96.0	0.0	.	147	.	0.183	.	none	.	.	PASS	Pindel
MUC5B	727897	hgsc.bcm.edu	hg19	11	1272661	1272678	+	In_Frame_Del	DEL	CCGAGCACTATAGCCACC	CCGAGCACTATAGCCACC	-	novel		TCGA-2Z-A9JM-01A-12D-A42J-10	TCGA-2Z-A9JM-10A-01D-A42M-10	CCGAGCACTATAGCCACC	CCGAGCACTATAGCCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5f432901-8404-4499-ac42-e4560804eee8	db9c908a-91c7-4c8f-b608-39bc3e98d82b	.	MUC5B	NM_002458	exon31	c.14550_14567del	p.4850_4856del	.	.	96.0	15.0	136.0	0.0	.	473	.	0.156	.	none	.	.	PASS	Pindel
