Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
OTUD3	23252	hgsc.bcm.edu	hg19	1	20233044	20233044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	OTUD3	NM_015207	exon7	c.G955A	p.E319K	AGGACCGAAAACA	.	126.0	10.0	151.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62253584	62253584	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	INADL	NM_176877	exon8	c.C1008G	p.P336P	CACCCCCCCTGCC	.	46.0	13.0	44.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
ATG4C	84938	hgsc.bcm.edu	hg19	1	63294738	63294738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ATG4C	NM_178221	exon7	c.A824G	p.Q275R	ATAAACAGAGTGC	.	133.0	37.0	133.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
FMO2	2327	hgsc.bcm.edu	hg19	1	171162500	171162500	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	FMO2	NM_001460	exon3	c.T159C	p.S53S	AGCAAGTATCTAT	.	53.0	21.0	89.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98354318	98354318	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ZAP70	NM_001079	exon12	c.C1581T	p.V527V	TGGGGTCACCATG	.	60.0	22.0	73.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152410531	152410531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	NEB	NM_001271208	exon126	c.C19437A	p.Y6479X	TGATCTGTACAGG	.	74.0	4.0	90.0	0.0	.	1697	.	.	.	none	.	.	PASS	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16002183	16002183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	PROM1	NM_006017	exon13	c.T1514A	p.F505Y	AAGACAAAGGTAA	.	41.0	15.0	34.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
MANBA	4126	hgsc.bcm.edu	hg19	4	103560989	103560989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	MANBA	NM_005908	exon14	c.C1895A	p.T632K	GTTTCTGTTTTGA	.	82.0	4.0	87.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37170251	37170251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	C5orf42	NM_023073	exon33	c.T6354G	p.F2118L	TTTAATAAAAAAT	.	132.0	41.0	108.0	0.0	.	422	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC1	55227	hgsc.bcm.edu	hg19	6	53784349	53784349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	LRRC1	NM_018214	exon12	c.T1160A	p.L387Q	TGTGGCTATCTGA	.	91.0	28.0	105.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24690128	24690128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	MPP6	NM_016447	exon6	c.A448G	p.N150D	GAAAATAATGATC	.	81.0	31.0	77.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
TBRG4	9238	hgsc.bcm.edu	hg19	7	45148711	45148711	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	TBRG4	NM_001261834	exon2	c.A159G	p.S53S	GGTGGCTGAGGAA	.	95.0	21.0	87.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17611702	17611702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	MTUS1	NM_001001924	exon2	c.G1615A	p.A539T	ATGAGGCACTGGT	.	60.0	26.0	44.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41583374	41583374	+	Missense_Mutation	SNP	G	G	A	rs368414600		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ANK1	NM_001142446	exon6	c.C616T	p.R206C	GGAGGCGCACCTT	.	76.0	28.0	81.0	0.0	.	497	.	.	.	weak	.	.	PASS	Atlas-SNP
CACNB2	783	hgsc.bcm.edu	hg19	10	18550223	18550223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	CACNB2	NM_000724	exon1	c.C25T	p.R9C	GTGCATCGCCGGC	.	56.0	13.0	84.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf118	55088	hgsc.bcm.edu	hg19	10	115922396	115922396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	C10orf118	NM_018017	exon2	c.A632G	p.K211R	ACTTACTTTTTTA	.	67.0	25.0	67.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	hg19	11	6236092	6236092	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	FAM160A2	NM_032127	exon10	c.C2307T	p.N769N	GACGGAGTTCTGC	.	44.0	14.0	59.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
NPAT	4863	hgsc.bcm.edu	hg19	11	108043763	108043763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	NPAT	NM_002519	exon13	c.G1948A	p.E650K	GAGCTTCATTTTC	.	55.0	15.0	53.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
PCED1B	91523	hgsc.bcm.edu	hg19	12	47629401	47629401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	.	NM_138371	exon2	c.G555T	p.K185N	GCAGAAGGCCACC	.	45.0	17.0	29.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	hg19	12	93171433	93171433	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	EEA1	NM_003566	exon27	c.T3900C	p.L1300L	TCCTTTAAGACAT	.	69.0	17.0	58.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R5E	5529	hgsc.bcm.edu	hg19	14	63842804	63842804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	PPP2R5E	NM_006246	exon14	c.C1327T	p.R443C	CTTCACGCTCCTT	.	45.0	13.0	55.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
RCCD1	91433	hgsc.bcm.edu	hg19	15	91500569	91500569	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	RCCD1	NM_001017919	exon3	c.T393A	p.A131A	CCAGGCTGGGAGG	.	63.0	22.0	58.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	hg19	16	20371931	20371931	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	PDILT	NM_174924	exon11	c.C1465T	p.L489L	TTTCCAGGAAGTC	.	81.0	17.0	84.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
TK2	7084	hgsc.bcm.edu	hg19	16	66547633	66547633	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	TK2	NM_001272050	exon10	c.408+1G>C	.	TACTTACCAGAAC	.	56.0	19.0	57.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	hg19	16	69117519	69117519	+	Silent	SNP	G	G	A	rs376805485	alternate_allele	TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	.	NM_024562	exon18	c.G3240A	p.L1080L	CTTCCTGTTCCCT	.	69.0	4.0	84.0	0.0	.	.	.	.	.	alt	.	.	PASS	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27005195	27005195	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	SUPT6H	NM_003170	exon9	c.A1101C	p.R367R	CATGCGAAATCAG	.	112.0	35.0	85.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP1	8165	hgsc.bcm.edu	hg19	17	55183561	55183561	+	Missense_Mutation	SNP	G	G	C	rs145117487	alternate_allele	TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	AKAP1	NM_001242902	exon3	c.G736C	p.G246R	GATAAGGGGAAGA	.	98.0	30.0	104.0	0.0	.	73	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
SOX9	6662	hgsc.bcm.edu	hg19	17	70117912	70117912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	SOX9	NM_000346	exon1	c.A380G	p.Y127C	ACCAGTACCCGCA	.	168.0	59.0	242.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
FXYD1	5348	hgsc.bcm.edu	hg19	19	35631004	35631004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	FXYD1	NM_005031	exon2	c.C21G	p.I7M	CCACATCTTGGTT	.	17.0	6.0	23.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57646984	57646984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ZIM3	NM_052882	exon5	c.C721A	p.H241N	TCTGATGTTGAAA	.	31.0	11.0	51.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
GUCD1	83606	hgsc.bcm.edu	hg19	22	24942883	24942883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	.	NM_031444	exon4	c.T385A	p.C129S	CTCACCATTTCTC	.	55.0	12.0	79.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ACE2	59272	hgsc.bcm.edu	hg19	X	15596288	15596288	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ACE2	NM_021804	exon10	c.C1221T	p.I407I	TGACATGATTTCC	.	129.0	44.0	154.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
LANCL3	347404	hgsc.bcm.edu	hg19	X	37431495	37431495	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	LANCL3	NM_001170331	exon1	c.C372T	p.G124G	CGGGGGCGCGGGC	.	57.0	16.0	63.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
FAM104B	90736	hgsc.bcm.edu	hg19	X	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	FAM104B	NM_001166699	exon3	c.G223C	p.D75H	TTGCATCGGGTTC	.	54.0	4.0	52.0	0.0	.	28	.	.	.	alt	C|0.600;T|0.400	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765176	66765176	+	Missense_Mutation	SNP	A	A	T	rs62636527		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	AR	NM_000044	exon1	c.A188T	p.Q63L	AGCAGCAGCAGCA	.	137.0	18.0	148.0	0.0	.	249	.	.	.	weak	A|0.982;T|0.018	0.018	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765179	66765179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	AR	NM_000044	exon1	c.A191T	p.Q64L	AGCAGCAGCAGCA	.	134.0	19.0	145.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
MAPRE3	22924	hgsc.bcm.edu	hg19	2	27247068	27247072	+	Frame_Shift_Del	DEL	CAACC	CAACC	-	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	CAACC	CAACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	MAPRE3,lymph_node,lymphoid_neoplasm,0,1	MAPRE3	NM_012326	exon4	c.371_375del	p.124_125del	.	.	111.0	35.0	123.0	0.0	.	40	.	0.315315	0	none	.	.	PASS	Atlas-Indel,Pindel
ATP6V1E2	90423	hgsc.bcm.edu	hg19	2	46739168	46739179	+	Frame_Shift_Del	DEL	AGGCTTATATAA	AGGCTTATATAA	-	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	AGGCTTATATAA	AGGCTTATATAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ATP6V1E2	NM_080653	exon2	c.675_1795del	p.225_227del	.	.	42.0	10.0	30.0	0.0	.	25	.	0.238095	0	none	.	.	PASS	Atlas-INDEL
MYO7B	4648	hgsc.bcm.edu	hg19	2	128390900	128390900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	MYO7B	NM_001080527	exon39	c.5394delC	p.R1798fs	.	.	161.0	41.0	155.0	0.0	.	359	.	0.254658	0	none	.	.	PASS	Atlas-Indel,Pindel
ALS2CR11	151254	hgsc.bcm.edu	hg19	2	202483729	202483729	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	ALS2CR11	NM_001168217	exon1	c.126delC	p.H42fs	.	.	138.0	43.0	107.0	0.0	.	194	.	0.311594	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF233	353355	hgsc.bcm.edu	hg19	19	44778797	44778797	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.,8	ZNF233	NM_001207005	exon5	c.1983delG	p.S661fs	.	.	53.0	53.0	59.0	0.0	.	73	.	1	0	none	.	.	PASS	Atlas-INDEL
RIMBP3C	150221	hgsc.bcm.edu	hg19	22	21741340	21741341	+	In_Frame_Ins	INS	-	-	TGCAGG	novel		TCGA-2Z-A9JO-01A-11D-A42J-10	TCGA-2Z-A9JO-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be2d72cb-f80c-4e4e-898b-bcb53f6fbee6	c3d84203-c64e-4591-bf15-d40efc7076fd	.	RIMBP3C	NM_001128633	exon1	c.3193_3194insTGCAGG	p.L1065delinsLQV	.	.	26.0	26.0	1.0	0.0	.	6	.	1.000	.	none	.	.	PASS	Pindel
