Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FAM213B	127281	hgsc.bcm.edu	hg19	1	2518720	2518720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	.	NM_001195736	exon2	c.A344T	p.D115V	ACGGCGACTACTT	.	58.0	31.0	68.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10177640	10177640	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	UBE4B	NM_001105562	exon8	c.G1320C	p.E440D	AATAGAGGAAAAA	.	355.0	154.0	319.0	1.0	.	233	.	.	.	none	.	.	PASS	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15627701	15627701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	FHAD1	NM_052929	exon6	c.G679T	p.D227Y	ACCCAGGATGAAA	.	100.0	49.0	99.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
S100A6	6277	hgsc.bcm.edu	hg19	1	153507304	153507304	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	S100A6	NM_014624	exon3	c.G141A	p.K47K	CTGCAGCTTCTAA	.	72.0	38.0	78.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf43	25912	hgsc.bcm.edu	hg19	1	154180025	154180025	+	Silent	SNP	T	T	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	C1orf43	NM_001098616	exon7	c.A666C	p.T222T	GAGGTATGTCACC	.	112.0	40.0	154.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	hg19	1	155646420	155646420	+	Silent	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	YY1AP1	NM_001198904	exon4	c.T657G	p.V219V	GGGTTTAACCTTC	.	92.0	8.0	85.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
LHX4	89884	hgsc.bcm.edu	hg19	1	180235629	180235629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	LHX4	NM_033343	exon3	c.C351A	p.C117X	TGCTTGCATCATC	.	113.0	49.0	110.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
IARS2	55699	hgsc.bcm.edu	hg19	1	220267580	220267580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	IARS2	NM_018060	exon1	c.C22T	p.R8C	CGCCCTCGCGGGC	.	76.0	19.0	89.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223285550	223285550	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	TLR5	NM_003268	exon6	c.A824T	p.K275I	GGATCTTTGATGT	.	147.0	62.0	157.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237713903	237713903	+	Silent	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	RYR2	NM_001035	exon27	c.C3126A	p.T1042T	CCGAACCAAGAAA	.	180.0	83.0	175.0	0.0	.	1273	.	.	.	none	.	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	hg19	2	10105481	10105481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	GRHL1	NM_198182	exon8	c.T1081C	p.F361L	ATTTCCTTCACAT	.	85.0	38.0	86.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	hg19	2	10105483	10105483	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	GRHL1	NM_198182	exon8	c.C1083T	p.F361F	TTCCTTCACATGG	.	87.0	38.0	87.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY3	109	hgsc.bcm.edu	hg19	2	25095499	25095499	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ADCY3	NM_004036	exon2	c.C765T	p.F255F	CTCCAGGAAGGCC	.	135.0	7.0	182.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
SULT1C4	27233	hgsc.bcm.edu	hg19	2	108999668	108999668	+	Silent	SNP	T	T	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SULT1C4	NM_006588	exon4	c.T513C	p.A171A	TCTGGCTGGGAAA	.	126.0	40.0	146.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	hg19	2	112767644	112767644	+	Splice_Site	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MERTK	NM_006343	exon15	c.2079+1G>C	.	CCAAAGGTAATGA	.	54.0	16.0	52.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL23	151230	hgsc.bcm.edu	hg19	2	170592248	170592248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	KLHL23	NM_144711	exon2	c.C724T	p.Q242X	GGCCTTCAAAGAA	.	277.0	127.0	301.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179506980	179506980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	TTN	NM_001267550	exon219	c.A40542C	p.E13514D	AACAACTTCTTCC	.	123.0	55.0	120.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
INO80D	54891	hgsc.bcm.edu	hg19	2	206921321	206921321	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	INO80D	NM_017759	exon4	c.G565C	p.V189L	GTCGAACTTTTAA	.	76.0	38.0	89.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234343452	234343452	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	DGKD	NM_152879	exon5	c.A491T	p.H164L	GGATGCACAATTG	.	69.0	22.0	75.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	433428	433428	+	Silent	SNP	A	A	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	CHL1	NM_001253388	exon21	c.A2862G	p.L954L	GGGACTACCTAAG	.	117.0	5.0	106.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1424739	1424739	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	CNTN6,NS,carcinoma,+1,1	CNTN6	NM_014461	exon18	c.G2280A	p.R760R	ATCAAGGTTTGTC	.	243.0	90.0	279.0	0.0	.	245	.	.	.	none	.	.	PASS	Atlas-SNP
CXCR6	10663	hgsc.bcm.edu	hg19	3	45988986	45988986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	CXCR6	NM_006564	exon2	c.G1013A	p.S338N	CCACCAGCATGTT	.	113.0	40.0	98.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
PHF7	51533	hgsc.bcm.edu	hg19	3	52456291	52456291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PHF7	NM_016483	exon9	c.A734G	p.Y245C	AGCGCTATCAGCA	.	102.0	38.0	89.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100565235	100565235	+	Silent	SNP	T	T	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ABI3BP	NM_015429	exon18	c.A1578G	p.E526E	TGTCACTTCTGGG	.	134.0	62.0	109.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
PLOD2	5352	hgsc.bcm.edu	hg19	3	145806425	145806425	+	Nonsense_Mutation	SNP	A	A	T	rs367818257	alternate_allele	TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PLOD2	NM_182943	exon9	c.T953A	p.L318X	GTCAACAATATGT	.	434.0	187.0	386.0	1.0	.	81	.	.	.	alt	.	.	PASS	Atlas-SNP
PRKCI	5584	hgsc.bcm.edu	hg19	3	170016826	170016826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	PRKCI,NS,carcinoma,0,1	PRKCI	NM_002740	exon17	c.C1631A	p.S544Y	ATATTTCTGGGGA	.	140.0	70.0	99.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf46	201725	hgsc.bcm.edu	hg19	4	159592804	159592804	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	C4orf46	NM_001008393	exon1	c.G150A	p.V50V	CTGGTCCACCGTT	.	226.0	100.0	236.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
MFAP3L	9848	hgsc.bcm.edu	hg19	4	170913146	170913146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	MFAP3L,caecum,carcinoma,0,1	MFAP3L	NM_021647	exon3	c.G613A	p.A205T	GCTTGGCGATCTC	.	122.0	44.0	137.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
SV2C	22987	hgsc.bcm.edu	hg19	5	75427885	75427885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SV2C	NM_014979	exon2	c.G310C	p.D104H	GCGAAGGACAGCA	.	123.0	49.0	117.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
MEF2C	4208	hgsc.bcm.edu	hg19	5	88027620	88027620	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MEF2C	NM_001193347	exon9	c.T790G	p.L264V	TTCCTAAATTCAT	.	81.0	5.0	92.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89949370	89949370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	GPR98	NM_032119	exon20	c.G3979C	p.A1327P	ACGGATGCTTTGT	.	151.0	69.0	149.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176518791	176518791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	FGFR4	NM_022963	exon5	c.T709C	p.Y237H	TATAACTACCTGC	.	86.0	29.0	91.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A1	6580	hgsc.bcm.edu	hg19	6	160560884	160560884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	SLC22A1,colon,carcinoma,0,1	SLC22A1	NM_153187	exon7	c.A1261T	p.I421F	GTCATGATTTTTA	.	32.0	4.0	35.0	2.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
FAM20C	56975	hgsc.bcm.edu	hg19	7	208933	208933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	FAM20C	NM_020223	exon3	c.A820G	p.M274V	CTCATCATGACCT	.	112.0	36.0	84.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47451362	47451362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	TNS3	NM_022748	exon13	c.T686A	p.V229D	TCGATGACGATGC	.	160.0	102.0	116.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	hg19	7	99023210	99023210	+	Silent	SNP	T	T	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	.	NM_001198879	exon7	c.A1092G	p.L364L	CGGCTGTAGCCCT	.	70.0	37.0	64.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MET	NM_001127500	exon16	c.G3328A	p.V1110I	GGTTGTGTATATC	.	153.0	95.0	140.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
BMP1	649	hgsc.bcm.edu	hg19	8	22069171	22069171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	BMP1	NM_006129	exon20	c.T2891G	p.I964S	ACACCATCACCAA	.	88.0	35.0	79.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
LYN	4067	hgsc.bcm.edu	hg19	8	56922657	56922657	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	LYN	NM_002350	exon13	c.G1527C	p.Q509H	ATACCAGCAGCAG	.	173.0	59.0	187.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
LYN	4067	hgsc.bcm.edu	hg19	8	56922659	56922659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	LYN	NM_002350	exon13	c.A1529T	p.Q510L	ACCAGCAGCAGCC	.	171.0	59.0	184.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DECR1	1666	hgsc.bcm.edu	hg19	8	91055027	91055027	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	DECR1,colon,carcinoma,0,1	DECR1	NM_001359	exon7	c.A737C	p.K246T	AAACCAAAGTAAG	.	79.0	35.0	64.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
RBM12B	389677	hgsc.bcm.edu	hg19	8	94748429	94748429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	RBM12B	NM_203390	exon3	c.G210C	p.E70D	AAAGAGCTCTACA	.	105.0	45.0	100.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	hg19	9	125612011	125612011	+	Silent	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	RC3H2	NM_001100588	exon21	c.C3471G	p.T1157T	AGATGTGGTGATG	.	150.0	58.0	187.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA7	310	hgsc.bcm.edu	hg19	10	75156296	75156296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ANXA7	NM_004034	exon5	c.A416C	p.Q139P	GTAGGTTGTCCTC	.	355.0	149.0	324.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	hg19	11	244701	244701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PSMD13	NM_175932	exon4	c.C342G	p.I114M	AGTGATCCTGTGT	.	359.0	143.0	377.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
OR51A7	119687	hgsc.bcm.edu	hg19	11	4929473	4929473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	OR51A7	NM_001004749	exon1	c.T874A	p.C292S	GTGTACTGTGTAA	.	102.0	44.0	116.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
ELP4	26610	hgsc.bcm.edu	hg19	11	31531372	31531372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ELP4	NM_019040	exon1	c.C41G	p.T14S	CGAGTACTGGGTC	.	88.0	45.0	114.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	hg19	11	61507009	61507009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	DAGLA	NM_006133	exon17	c.C1729A	p.L577M	ACCACCCTGGCCA	.	73.0	35.0	97.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf48	79081	hgsc.bcm.edu	hg19	11	62432403	62432403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	C11orf48	NM_024099	exon5	c.C581T	p.S194L	GCTCCCGATTCAA	.	95.0	36.0	76.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
BSCL2	26580	hgsc.bcm.edu	hg19	11	62474607	62474607	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	BSCL2	NM_001122955	exon1	c.C61T	p.Q21X	TGATCTGGTCTCC	.	108.0	46.0	114.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133805518	133805518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	IGSF9B	NM_014987	exon7	c.G961A	p.V321M	ACTGCACGGTCAG	.	59.0	19.0	48.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
HOXC6	3223	hgsc.bcm.edu	hg19	12	54422675	54422675	+	Missense_Mutation	SNP	C	C	A	rs80157375	bycluster;by1000genomes;alternate_allele	TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	HOXC6	NM_004503	exon1	c.C370A	p.P124T	ATTTACCCCTGGA	.	35.0	16.0	42.0	0.0	.	30	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
ARHGAP9	64333	hgsc.bcm.edu	hg19	12	57871296	57871296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ARHGAP9	NM_001080157	exon3	c.T702G	p.N234K	CAGTGAATTTATG	.	201.0	82.0	274.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78562567	78562567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	NAV3	NM_014903	exon24	c.T4902G	p.I1634M	AACCATTGAAATG	.	209.0	84.0	207.0	0.0	.	506	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	hg19	13	36744692	36744692	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	.	NM_001198910	exon15	c.G1464A	p.T488T	AGTGCACGTCTGG	.	135.0	66.0	129.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	hg19	13	42733507	42733507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	DGKH	NM_001204504	exon7	c.G728A	p.G243D	AAGATGGCGTAAG	.	93.0	45.0	88.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77642846	77642846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MYCBP2	NM_015057	exon70	c.T12025G	p.S4009A	CATCAGAGGAGGC	.	117.0	46.0	108.0	0.0	.	1029	.	.	.	none	.	.	PASS	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24868618	24868618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	NYNRIN	NM_025081	exon2	c.G166T	p.E56X	CAGCTCGAGGGGC	.	106.0	45.0	124.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R13B	23368	hgsc.bcm.edu	hg19	14	104206573	104206573	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PPP1R13B	NM_015316	exon12	c.A2180T	p.Y727F	CGCTGGTACAGCA	.	53.0	27.0	55.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
ASPG	374569	hgsc.bcm.edu	hg19	14	104559866	104559866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ASPG	NM_001080464	exon3	c.T230A	p.L77Q	CCGTGCTGGAGTG	.	57.0	23.0	78.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42114511	42114511	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MAPKBP1	NM_001128608	exon27	c.G3138A	p.E1046E	AGAAGAGGAGGGA	.	55.0	27.0	49.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65676599	65676599	+	Silent	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	IGDCC4	NM_020962	exon20	c.C3501A	p.I1167I	ACCCGAGATGAGA	.	101.0	38.0	143.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
WDR24	84219	hgsc.bcm.edu	hg19	16	734812	734812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	WDR24	NM_032259	exon9	c.C2295A	p.H765Q	CTGCAGGTGGCCG	.	77.0	42.0	106.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24801496	24801496	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	TNRC6A	NM_014494	exon6	c.G1533A	p.E511E	TGGAGAGTCAAAA	.	100.0	36.0	133.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
ELMO3	79767	hgsc.bcm.edu	hg19	16	67233133	67233133	+	Silent	SNP	A	A	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	ELMO3,caecum,carcinoma,0,1	ELMO3	NM_024712	exon1	c.A63G	p.G21G	AAAGGGAGGACCT	.	124.0	41.0	141.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
JPH3	57338	hgsc.bcm.edu	hg19	16	87724046	87724046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	JPH3	NM_020655	exon4	c.G2080T	p.D694Y	CGTTGGGACTTGA	.	87.0	27.0	93.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89348979	89348979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ANKRD11	NM_001256183	exon9	c.C3971T	p.S1324F	GTGAAAGAGACCT	.	52.0	26.0	58.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF594	84622	hgsc.bcm.edu	hg19	17	5086715	5086715	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ZNF594	NM_032530	exon2	c.T837A	p.S279R	GTGTGAACTTTGA	.	44.0	31.0	35.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
KRT17	3872	hgsc.bcm.edu	hg19	17	39780421	39780421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	KRT17	NM_000422	exon1	c.T341C	p.V114A	ATCTTCACCTCCA	.	262.0	79.0	175.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	hg19	17	42249482	42249482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ASB16	NM_080863	exon2	c.A370C	p.T124P	GGCTACACAGACT	.	54.0	36.0	44.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	hg19	18	21761235	21761235	+	Silent	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	OSBPL1A	NM_080597	exon19	c.C1686A	p.S562S	GATCTTGGATAGT	.	84.0	38.0	66.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992862	67992862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SOCS6	NM_004232	exon2	c.A958T	p.N320Y	CAGAATAATCAAA	.	84.0	35.0	88.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1802569	1802569	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ATP8B3	NM_138813	exon11	c.A980T	p.Y327F	AGGGAGTATTTCT	.	55.0	30.0	56.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38631838	38631838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SIPA1L3	NM_015073	exon11	c.C3158G	p.T1053S	CGGAGACCTACGA	.	124.0	62.0	121.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO17	115290	hgsc.bcm.edu	hg19	19	39435737	39435737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	FBXO17	NM_148169	exon5	c.G592T	p.A198S	CTCGAGCGCCCCA	.	87.0	32.0	65.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41306764	41306764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	EGLN2	NM_053046	exon2	c.C287T	p.A96V	AAGGCGCTGCAGC	.	72.0	37.0	79.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CYP2S1	29785	hgsc.bcm.edu	hg19	19	41703754	41703754	+	Silent	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	CYP2S1	NM_030622	exon3	c.G414C	p.L138L	GGACCTGGGCATG	.	77.0	22.0	79.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF649	65251	hgsc.bcm.edu	hg19	19	52400157	52400157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ZNF649	NM_023074	exon3	c.G90C	p.K30N	CAGGTCCTTCTGA	.	127.0	47.0	147.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
U2AF2	11338	hgsc.bcm.edu	hg19	19	56180949	56180949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	U2AF2,NS,carcinoma,0,1	U2AF2	NM_007279	exon11	c.A1184T	p.Y395F	AGGAGTATGAGGA	.	145.0	62.0	173.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	hg19	19	57840518	57840518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ZNF543	NM_213598	exon4	c.C1688A	p.T563N	ACCCTACCATTGT	.	230.0	11.0	165.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SMOX	54498	hgsc.bcm.edu	hg19	20	4167467	4167467	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SMOX	NM_001270691	exon7	c.G1608C	p.R536S	TAACAGGGGCGCC	.	92.0	30.0	54.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
PAX1	5075	hgsc.bcm.edu	hg19	20	21695396	21695396	+	Silent	SNP	C	C	T	rs368125977		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PAX1	NM_006192	exon5	c.C1560T	p.F520F	ACACTTCCTTTAT	.	88.0	59.0	76.0	0.0	.	152	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC32A1	140679	hgsc.bcm.edu	hg19	20	37356236	37356236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	SLC32A1,NS,carcinoma,0,2	SLC32A1	NM_080552	exon2	c.G532T	p.E178X	GACGGCGAGGTGG	.	44.0	2.0	30.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40790019	40790019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PTPRT	NM_133170	exon18	c.G2712C	p.Q904H	GTAGCCCTGGCCT	.	148.0	48.0	108.0	0.0	.	372	.	.	.	none	.	.	PASS	Atlas-SNP
PTGIS	5740	hgsc.bcm.edu	hg19	20	48129710	48129710	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	PTGIS,colon,carcinoma,0,1	PTGIS	NM_000961	exon8	c.C1113T	p.D371D	TCGCCCGTCTGCC	.	109.0	34.0	75.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58415459	58415459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PHACTR3	NM_080672	exon10	c.G1420A	p.E474K	AGAAGAGAAATCA	.	334.0	87.0	244.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
C22orf42	150297	hgsc.bcm.edu	hg19	22	32555136	32555136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	C22orf42	NM_001010859	exon1	c.G67A	p.D23N	CCACATCTGGCCT	.	80.0	34.0	62.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
NOL12	79159	hgsc.bcm.edu	hg19	22	38087326	38087326	+	Silent	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	NOL12	NM_024313	exon6	c.C625A	p.R209R	AAAGCACGGCACA	.	240.0	108.0	253.0	1.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53566667	53566667	+	Silent	SNP	C	C	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	HUWE1	NM_031407	exon75	c.G11583T	p.G3861G	ACACTCCCCAAGC	.	107.0	52.0	100.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEE1	57692	hgsc.bcm.edu	hg19	X	75651091	75651091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MAGEE1	NM_020932	exon1	c.G2768A	p.R923K	TCCACAGAAAGGA	.	367.0	130.0	426.0	0.0	.	236	.	.	.	none	.	.	PASS	Atlas-SNP
TCEAL3	85012	hgsc.bcm.edu	hg19	X	102864302	102864302	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	TCEAL3	NM_001006933	exon3	c.G310C	p.D104H	GCTGAAGATTATG	.	275.0	120.0	318.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SASH3	54440	hgsc.bcm.edu	hg19	X	128922424	128922424	+	Silent	SNP	A	A	C	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	SASH3	NM_018990	exon3	c.A171C	p.S57S	TGACTCAGGTGTC	.	350.0	27.0	404.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ZKSCAN4	387032	hgsc.bcm.edu	hg19	6	28213691	28213692	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ZKSCAN4	NM_019110	exon5	c.841_842del	p.281_281del	.	.	85.0	36.0	108.0	0.0	.	42	.	0.423529	0	none	.	.	PASS	Atlas-Indel,Pindel
HNRNPA1	3178	hgsc.bcm.edu	hg19	12	54675281	54675282	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	HNRNPA1	NM_002136	exon2	c.126_127del	p.42_43del	.	.	36.0	16.0	31.0	0.0	.	72	.	0.444444	0	none	.	.	PASS	Atlas-Indel,Pindel
FSD2	123722	hgsc.bcm.edu	hg19	15	83428118	83428118	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	FSD2	NM_001007122	exon13	c.2233delC	p.H745fs	.	.	67.0	34.0	80.0	0.0	.	45	.	0.507463	0	none	.	.	PASS	Atlas-Indel,Pindel
ITIH3	3699	hgsc.bcm.edu	hg19	3	52835082	52835082	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ITIH3	NM_002217	exon11	c.1302delC	p.N434fs	.	.	153.0	59.0	170.0	0.0	.	132	.	0.385621	0	none	.	.	PASS	Atlas-Indel,Pindel
ING4	51147	hgsc.bcm.edu	hg19	12	6760546	6760546	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ING4	NM_001127582	exon7	c.655delA	p.I219fs	.	.	164.0	13.0	103.0	0.0	.	31	.	0.0792683	0	none	.	.	PASS	Atlas-INDEL
MYO3B	140469	hgsc.bcm.edu	hg19	2	171319897	171319898	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MYO3B	NM_001083615	exon24	c.2750_2751insA	p.I917fs	.	.	108.0	50.0	123.0	0.0	.	320	.	0.462963	0	none	.	.	PASS	Atlas-Indel,Pindel
ATCAY	85300	hgsc.bcm.edu	hg19	19	3905489	3905489	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ATCAY	NM_033064	exon4	c.193delG	p.A65fs	.	.	115.0	43.0	127.0	0.0	.	84	.	0.373913	0	none	.	.	PASS	Atlas-Indel,Pindel
PEX5L	51555	hgsc.bcm.edu	hg19	3	179615950	179615950	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	PEX5L	NM_016559	exon3	c.179delT	p.L60fs	.	.	112.0	45.0	98.0	0.0	.	104	.	0.401786	0	none	.	.	PASS	Atlas-Indel,Pindel
RNF32	140545	hgsc.bcm.edu	hg19	7	156451243	156451243	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	RNF32	NM_030936	exon7	c.662delG	p.R221fs	.	.	204.0	103.0	125.0	0.0	.	77	.	0.504902	0	none	.	.	PASS	Atlas-Indel,Pindel
ZDHHC7	55625	hgsc.bcm.edu	hg19	16	85012877	85012877	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ZDHHC7	NM_001145548	exon6	c.567delT	p.C189X	.	.	207.0	90.0	256.0	0.0	.	55	.	0.434783	0	none	.	.	PASS	Atlas-Indel,Pindel
MAP3K6	9064	hgsc.bcm.edu	hg19	1	27689486	27689486	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	MAP3K6	NM_004672	exon7	c.999delG	p.K333fs	.	.	170.0	70.0	187.0	0.0	.	134	.	0.411765	0	none	.	.	PASS	Atlas-Indel,Pindel
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100565237	100565237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ABI3BP	NM_015429	exon18	c.1577delA	p.E526fs	.	.	133.0	60.0	108.0	0.0	.	305	.	0.451128	0	none	.	.	PASS	Atlas-INDEL
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100565235	100565237	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-4A-A93W-01A-11D-A36X-10	TCGA-4A-A93W-10A-01D-A370-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a	afcc0a63-8340-47fc-a4da-380a1f4fda4a	.	ABI3BP	NM_015429	exon18	c.1577_1579del	p.526_527del	.	.	132.0	43.0	107.0	0.0	.	305	.	0.326	.	none	.	.	PASS	Pindel
