Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ARHGEF19	128272	hgsc.bcm.edu	hg19	1	16532449	16532449	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ARHGEF19	NM_153213	exon8	c.G1428A	p.Q476Q	GCGCTCCTGGTAG	.	98.0	23.0	80.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SFPQ	6421	hgsc.bcm.edu	hg19	1	35657046	35657046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	SFPQ	NM_005066	exon2	c.C913T	p.P305S	CAGCAGGTAGATT	.	134.0	31.0	126.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200587031	200587031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	KIF14	NM_014875	exon2	c.A821G	p.E274G	CTTTTTTCTAAGC	.	96.0	32.0	79.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY3	109	hgsc.bcm.edu	hg19	2	25062898	25062898	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ADCY3	NM_004036	exon6	c.A1199T	p.Y400F	CGCACATACCTGC	.	85.0	23.0	66.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48896944	48896944	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	STON1-GTF2A1L	NM_001198593	exon9	c.T3174C	p.D1058D	CGGTGATACATCT	.	199.0	36.0	203.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	255.0	13.0	177.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125367417	125367417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CNTNAP5	NM_130773	exon12	c.G1793A	p.G598E	ACCAGGGGAATAC	.	71.0	17.0	68.0	0.0	.	405	.	.	.	none	.	.	PASS	Atlas-SNP
NGEF	25791	hgsc.bcm.edu	hg19	2	233785268	233785268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	NGEF	NM_019850	exon5	c.A554T	p.K185I	GTCGATTTATCTC	.	56.0	9.0	55.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	hg19	3	21465455	21465455	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ZNF385D	NM_024697	exon7	c.G954T	p.G318G	ACTCACCCCCAGT	.	141.0	30.0	122.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF197	10168	hgsc.bcm.edu	hg19	3	44671000	44671000	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ZNF197	NM_001024855	exon2	c.G354A	p.E118E	GGTAGAGGAGCTG	.	255.0	55.0	181.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
TWF2	11344	hgsc.bcm.edu	hg19	3	52266117	52266117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	TWF2	NM_007284	exon3	c.C125T	p.S42L	TCCTGCGAGGCAC	.	96.0	6.0	85.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PRR23B	389151	hgsc.bcm.edu	hg19	3	138739039	138739039	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PRR23B	NM_001013650	exon1	c.C465G	p.Y155X	CTCCTCGTAGGCC	.	175.0	39.0	153.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FAM193A	8603	hgsc.bcm.edu	hg19	4	2696771	2696771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	FAM193A	NM_001256667	exon16	c.A2384G	p.H795R	CTGAGCACAGCTC	.	76.0	15.0	78.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
FAM47E	100129583	hgsc.bcm.edu	hg19	4	77204610	77204610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	FAM47E	NM_001136570	exon8	c.A1181G	p.X394W	AAGCATAGAAGAA	.	98.0	25.0	76.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PAPSS1	9061	hgsc.bcm.edu	hg19	4	108615096	108615096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PAPSS1	NM_005443	exon3	c.T242G	p.I81S	CATGGAATACCAT	.	64.0	13.0	55.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123207818	123207818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	KIAA1109	NM_015312	exon51	c.A9160G	p.M3054V	GTTACCATGTCAG	.	256.0	58.0	233.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126411503	126411503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	FAT4	NM_024582	exon17	c.T13526C	p.V4509A	CCATCGTGGGCAG	.	75.0	19.0	54.0	0.0	.	1752	.	.	.	none	.	.	PASS	Atlas-SNP
TDO2	6999	hgsc.bcm.edu	hg19	4	156831319	156831319	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	TDO2	NM_005651	exon6	c.C574G	p.L192V	GAACTGCTACTTA	.	114.0	23.0	127.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
PRKAA1	5562	hgsc.bcm.edu	hg19	5	40764924	40764924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	PRKAA1,NS,carcinoma,0,2	PRKAA1	NM_206907	exon8	c.G1283T	p.S428I	CTTTGACTTCTAA	.	124.0	28.0	116.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TTC37	9652	hgsc.bcm.edu	hg19	5	94814018	94814018	+	Silent	SNP	T	T	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	TTC37	NM_014639	exon40	c.A4341T	p.A1447A	AAGTAGTGCTAGT	.	146.0	32.0	156.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA9	83890	hgsc.bcm.edu	hg19	5	94994606	94994606	+	Silent	SNP	A	A	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	SPATA9	NM_031952	exon5	c.T486A	p.V162V	AGCATTAACACAG	.	108.0	21.0	78.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161495091	161495091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	GABRG2	NM_198904	exon1	c.T86A	p.L29H	TTCTGCTCCTGCT	.	95.0	29.0	74.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
RCAN2	10231	hgsc.bcm.edu	hg19	6	46424516	46424516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	RCAN2	NM_001251973	exon2	c.G198T	p.Q66H	CACTGACTGGTGA	.	92.0	15.0	119.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79655729	79655729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PHIP	NM_017934	exon38	c.C4619G	p.P1540R	TTCCCTGGTATTG	.	97.0	21.0	82.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM13	59336	hgsc.bcm.edu	hg19	6	100062606	100062606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PRDM13	NM_021620	exon4	c.G2095T	p.V699F	CCCGAGGTTGGGG	.	141.0	33.0	173.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
EIF3B	8662	hgsc.bcm.edu	hg19	7	2415106	2415106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	EIF3B	NM_001037283	exon14	c.G1972A	p.E658K	GACGTCGAATGGG	.	125.0	35.0	107.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95439731	95439731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	DYNC1I1,NS,carcinoma,0,1	DYNC1I1	NM_004411	exon3	c.G136A	p.V46I	GAACCCGTTCAGG	.	112.0	37.0	105.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
NOBOX	135935	hgsc.bcm.edu	hg19	7	144096177	144096177	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	NOBOX	NM_001080413	exon8	c.C1335T	p.P445P	AGGTGGGGGGCTG	.	99.0	23.0	75.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
TCEB1	6921	hgsc.bcm.edu	hg19	8	74858968	74858968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	TCEB1,NS,carcinoma,0,5	TCEB1	NM_005648	exon4	c.A236G	p.Y79C	ACCTTGTACGTAA	.	193.0	58.0	223.0	2.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110439255	110439255	+	Missense_Mutation	SNP	C	C	T	rs35375999	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PKHD1L1	NM_177531	exon25	c.C2870T	p.A957V	CAGCTGCAGATCT	.	71.0	9.0	83.0	0.0	.	522	.	.	.	alt	C|0.985;A|0.015	.	PASS	Atlas-SNP
AKR1C1	1645	hgsc.bcm.edu	hg19	10	5008141	5008141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	AKR1C1	NM_001353	exon2	c.G120T	p.L40F	CAAATTGGCAATT	.	184.0	20.0	155.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
UPF2	26019	hgsc.bcm.edu	hg19	10	11985132	11985132	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	UPF2	NM_080599	exon17	c.A3210G	p.E1070E	CTCCTCTTCTTCT	.	75.0	19.0	43.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A9	220963	hgsc.bcm.edu	hg19	10	61413535	61413535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	SLC16A9	NM_194298	exon5	c.T1249C	p.Y417H	TCACATATGGAAA	.	109.0	22.0	90.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	hg19	10	122650370	122650370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	WDR11	NM_018117	exon19	c.G2486T	p.C829F	CTGCGTGCTTTAG	.	127.0	26.0	108.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
OR51E2	81285	hgsc.bcm.edu	hg19	11	4703537	4703537	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	OR51E2	NM_030774	exon2	c.C405A	p.L135L	ATTGTTGAGCACT	.	95.0	25.0	77.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46799725	46799725	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CKAP5	NM_001008938	exon22	c.C2712A	p.A904A	CTTCAAGGCAGTT	.	92.0	20.0	105.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
RPS6KB2	6199	hgsc.bcm.edu	hg19	11	67201948	67201948	+	Missense_Mutation	SNP	C	C	G	rs369245928	alternate_allele	TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	RPS6KB2	NM_003952	exon13	c.C1148G	p.A383G	ACCAGGCCTTCCT	.	47.0	4.0	42.0	0.0	.	92	.	.	.	alt	.	.	PASS	Atlas-SNP
CARD17	440068	hgsc.bcm.edu	hg19	11	104971430	104971430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CARD17	NM_001007232	exon2	c.A84T	p.E28D	CAATAATTCACCC	.	125.0	36.0	95.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ARF3	377	hgsc.bcm.edu	hg19	12	49332835	49332835	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ARF3	NM_001659	exon5	c.C441T	p.S147S	ACGAAGGGAATGC	.	116.0	28.0	98.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
VTI1B	10490	hgsc.bcm.edu	hg19	14	68126460	68126460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	VTI1B	NM_006370	exon3	c.G354T	p.E118D	CTCATTCTCTACA	.	51.0	19.0	36.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ECI1	1632	hgsc.bcm.edu	hg19	16	2301546	2301546	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ECI1	NM_001178029	exon1	c.C22A	p.R8R	GGACTCGCACAGA	.	108.0	22.0	97.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PPL	5493	hgsc.bcm.edu	hg19	16	4935927	4935927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PPL	NM_002705	exon22	c.A2729C	p.E910A	TCGTTCTCCAGCT	.	38.0	9.0	28.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
CACNG3	10368	hgsc.bcm.edu	hg19	16	24372986	24372986	+	Silent	SNP	C	C	T	rs148951012		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CACNG3	NM_006539	exon4	c.C750T	p.I250I	CCCCATCAGCAAA	.	121.0	23.0	125.0	0.0	.	112	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88501018	88501018	+	Silent	SNP	A	A	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	ZNF469	NM_001127464	exon2	c.A7056T	p.P2352P	GGACCCAGGGACC	.	186.0	47.0	143.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
HES7	84667	hgsc.bcm.edu	hg19	17	8024974	8024974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	.	NM_001165967	exon4	c.C608T	p.P203L	GGCGGCGGCAGCA	.	386.0	89.0	361.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10538254	10538254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	MYH3	NM_002470	exon31	c.A4259G	p.Q1420R	AGCCTCTGCTTGG	.	105.0	34.0	97.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17701402	17701402	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	RAI1	NM_030665	exon3	c.A5140T	p.K1714X	CTCCCCAAAAAGA	.	165.0	36.0	146.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
CDK5RAP3	80279	hgsc.bcm.edu	hg19	17	46048728	46048728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CDK5RAP3	NM_176096	exon2	c.G7T	p.D3Y	CGCCAGGACCATC	.	141.0	39.0	114.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274160	80274160	+	Missense_Mutation	SNP	C	C	T	rs200504177		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	CD7	NM_006137	exon3	c.G523A	p.A175T	AGGCTGCTGGCGG	.	83.0	25.0	42.0	0.0	.	25	.	.	.	weak	.	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274162	80274162	+	Missense_Mutation	SNP	G	G	T	rs201027731		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.,1	CD7	NM_006137	exon3	c.C521A	p.P174Q	GCTGCTGGCGGGT	.	81.0	9.0	46.0	0.0	.	25	.	.	.	weak	.	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274183	80274183	+	Missense_Mutation	SNP	G	G	C	rs199986856	by1000genomes;alternate_allele	TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	CD7,rectum,carcinoma,0,2	CD7	NM_006137	exon3	c.C500G	p.A167G	GCAGAGGCTGTCT	.	90.0	9.0	87.0	0.0	.	25	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
MAP2K7	5609	hgsc.bcm.edu	hg19	19	7975205	7975205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	MAP2K7,NS,carcinoma,0,1	MAP2K7	NM_145185	exon4	c.G394T	p.G132C	ACCTGCGGCCAGG	.	153.0	40.0	134.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9045908	9045908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	MUC16	NM_024690	exon5	c.C35723G	p.T11908R	TCAGTTGTTATAG	.	121.0	31.0	90.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54385763	54385763	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	PRKCG	NM_002739	exon1	c.C15T	p.G5G	TCTGGGCCCCGGC	.	124.0	27.0	109.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2618194	2618194	+	Missense_Mutation	SNP	A	A	C	rs186977735	bycluster;by1000genomes;alternate_allele	TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	TMC2	NM_080751	exon19	c.A2460C	p.K820N	ACCTAAAAGCAGC	.	83.0	11.0	105.0	0.0	.	121	.	.	.	alt	A|1.000;G|0.000	.	PASS	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382426	24382426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	.	NM_001136234	exon1	c.G1549C	p.A517P	GCTGCTGCTCCTG	.	86.0	11.0	80.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7814	7814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	.	ENST00000361739	exon1	c.G229A	p.A77T	CTCATCGCCCTCC	.	21.0	4.0	20.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14261	14261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	.	ENST00000361681	exon1	c.A413G	p.D138G	ATAGGATCCTCCC	.	32.0	15.0	22.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274159	80274160	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.,1	CD7	NM_006137	exon3	c.524_525insA	p.A175fs	.	.	85.0	16.0	59.0	0.0	.	25	.	0.188235	0	none	.	.	PASS	Atlas-INDEL
MARCH8	220972	hgsc.bcm.edu	hg19	10	45953921	45953921	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	MARCH8	NM_001002266	exon7	c.643delA	p.M215fs	.	.	85.0	19.0	95.0	0.0	.	29	.	0.223529	0	none	.	.	PASS	Atlas-Indel,Pindel
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13605661	13605662	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5P-A9JV-01A-12D-A42J-10	TCGA-5P-A9JV-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	16f56910-a925-41a1-8bbc-d8554292616a	d2370805-678e-421c-83ac-49a5cec3cf51	.	.	NM_148894	exon10	c.2863_2864insA	p.Q955fs	.	.	101.0	24.0	100.0	0.0	.	.	.	0.237624	0	none	.	.	PASS	Atlas-Indel,Pindel
