Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6529206	6529206	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	PLEKHG5_ENST00000377748,colon,carcinoma,0,1	PLEKHG5	NM_001265592	exon20	c.G2382A	p.E794E	CTCCTCCTCTTCC	.	28.0	5.0	30.0	1.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
GBP2	2634	hgsc.bcm.edu	hg19	1	89587538	89587538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	GBP2	NM_004120	exon2	c.G112C	p.V38L	CCACCACAGGCTG	.	77.0	60.0	83.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186072734	186072734	+	Silent	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	HMCN1	NM_031935	exon69	c.C10704G	p.P3568P	CCGGCCCCTTCCA	.	133.0	66.0	103.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196448320	196448320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	KCNT2,NS,carcinoma,0,1	KCNT2	NM_198503	exon5	c.C373G	p.L125V	AACTAAGATAACC	.	549.0	196.0	458.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
BPNT1	10380	hgsc.bcm.edu	hg19	1	220232335	220232335	+	Splice_Site	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	BPNT1	NM_006085	exon10	c.779-1G>C	.	ACTTGCCTATAGA	.	70.0	15.0	42.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47079260	47079260	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	SETD2_ENST00000409792,NS,carcinoma,0,2	SETD2	NM_014159	exon18	c.C7246T	p.Q2416X	CCCACTGAGTCTG	.	31.0	18.0	63.0	0.0	.	721	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130290142	130290142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	COL6A6	NM_001102608	exon6	c.G2882A	p.G961E	TGGCAGGATCAAG	.	177.0	63.0	146.0	0.0	.	497	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178916725	178916725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	PIK3CA_ENST00000263967,caecum,carcinoma,0,17	PIK3CA	NM_006218	exon2	c.C112T	p.R38C	TGCCTCCGTGAGG	.	265.0	137.0	158.0	0.0	.	8460	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	PIK3CA_ENST00000263967,NS,carcinoma,0,2	PIK3CA	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	542.0	259.0	360.0	1.0	.	8460	.	.	.	weak	.	.	PASS	Atlas-SNP
ADD1	118	hgsc.bcm.edu	hg19	4	2930015	2930015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ADD1	NM_014189	exon15	c.A2072G	p.K691R	TAGAGAAGGAGGA	.	102.0	47.0	178.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
PKD2	5311	hgsc.bcm.edu	hg19	4	88929118	88929118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PKD2	NM_000297	exon1	c.C233T	p.P78L	CTCCTCCGCTCTC	.	245.0	140.0	333.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CASP6	839	hgsc.bcm.edu	hg19	4	110624544	110624544	+	Missense_Mutation	SNP	G	G	C	rs376919922	alternate_allele	TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CASP6	NM_001226	exon1	c.C8G	p.S3W	GAGGCCGAGCTCA	.	227.0	135.0	251.0	0.0	.	25	.	.	.	alt	.	.	PASS	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102423700	102423700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	GIN1	NM_017676	exon8	c.A1471G	p.T491A	TTTTCGTATTTCT	.	74.0	27.0	71.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	hg19	6	35047434	35047434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ANKS1A	NM_015245	exon15	c.G2425A	p.E809K	GAGCTAGAGCTCG	.	83.0	36.0	64.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38919137	38919137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	DNAH8	NM_001206927	exon82	c.A12292T	p.I4098F	AAGTATATTGCAG	.	131.0	55.0	120.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51524419	51524419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PKHD1	NM_138694	exon61	c.A10505T	p.E3502V	TGGAGCTCATGGT	.	138.0	58.0	107.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	hg19	7	64863907	64863907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ZNF92	NM_152626	exon4	c.T880A	p.F294I	AAGGCCTTTAACC	.	103.0	46.0	78.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
CYP51A1	1595	hgsc.bcm.edu	hg19	7	91755569	91755569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CYP51A1	NM_000786	exon5	c.C768A	p.F256L	ATACCTGAAACTA	.	97.0	29.0	60.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM4	89122	hgsc.bcm.edu	hg19	7	99516791	99516791	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	TRIM4	NM_033017	exon1	c.C234T	p.R78R	GCCCAGGCGCCGG	.	57.0	24.0	45.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PARP12	64761	hgsc.bcm.edu	hg19	7	139762578	139762578	+	Missense_Mutation	SNP	G	G	C	rs201640031		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PARP12	NM_022750	exon1	c.C70G	p.P24A	GCTCGGGCAACTC	.	5.0	4.0	0.0	0.0	.	59	.	.	.	weak	.	.	PASS	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	hg19	8	101300044	101300044	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	RNF19A	NM_015435	exon3	c.C359G	p.T120S	ATGGAAGTTAATC	.	85.0	29.0	63.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H3	23144	hgsc.bcm.edu	hg19	8	144522390	144522390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	ZC3H3,NS,malignant_melanoma,0,1	ZC3H3	NM_015117	exon11	c.C2636A	p.S879Y	GATGAGGAGGAGG	.	109.0	0.0	82.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	hg19	8	146157588	146157588	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ZNF16	NM_006958	exon3	c.C585T	p.D195D	AGTTAGGTCCACA	.	87.0	37.0	76.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	hg19	9	139741257	139741257	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	C9orf172	NM_001080482	exon1	c.C2391T	p.R797R	CGCGCGCGAGCTG	.	33.0	12.0	49.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94250353	94250353	+	Splice_Site	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	IDE,colon,carcinoma,0,1	IDE	NM_004969	exon13	c.1431-1G>A	.	GCAACCCTAGAGA	.	62.0	25.0	51.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CNNM2	54805	hgsc.bcm.edu	hg19	10	104678741	104678741	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CNNM2	NM_199076	exon1	c.C504T	p.R168R	CCGCCGCACCTCG	.	160.0	59.0	128.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD8	118987	hgsc.bcm.edu	hg19	10	119044221	119044221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PDZD8	NM_173791	exon5	c.G2023A	p.D675N	GACGGTCGTCCGA	.	142.0	48.0	110.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF19	27339	hgsc.bcm.edu	hg19	11	60666069	60666069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PRPF19	NM_014502	exon13	c.G1084A	p.G362R	TGAGTCCGTCAGG	.	91.0	4.0	91.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
SART1	9092	hgsc.bcm.edu	hg19	11	65744127	65744127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	SART1	NM_005146	exon14	c.G1747C	p.D583H	CCCCAGGACTTTG	.	104.0	34.0	86.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
LRFN4	78999	hgsc.bcm.edu	hg19	11	66627359	66627359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	LRFN4	NM_024036	exon2	c.C1601G	p.T534S	TCTTCACTGTGGC	.	98.0	39.0	66.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC32	2615	hgsc.bcm.edu	hg19	11	76372150	76372150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	LRRC32,brain,glioma,0,2	LRRC32	NM_005512	exon3	c.C487T	p.R163C	TGAGGCGAGTCAG	.	62.0	11.0	38.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76872079	76872079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	MYO7A	NM_001127179	exon12	c.C1261T	p.P421S	TACAAGCCTCCCT	.	120.0	47.0	88.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10251426	10251426	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CLEC1A	NM_016511	exon1	c.T96G	p.H32Q	CTCTGGATGCCGA	.	124.0	32.0	104.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43896178	43896178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ADAMTS20	NM_025003	exon4	c.T644G	p.F215C	GTATGAAAGGGTA	.	82.0	24.0	56.0	0.0	.	635	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80182551	80182551	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PPP1R12A	NM_002480	exon21	c.T2679C	p.S893S	TGTAGAACTGGTT	.	69.0	27.0	45.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77742691	77742691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	MYCBP2	NM_015057	exon40	c.A5986G	p.N1996D	ACTGATTAGGGTT	.	105.0	40.0	94.0	0.0	.	1029	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	hg19	14	24787720	24787720	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ADCY4	NM_001198592	exon26	c.C3136A	p.R1046R	CACCCCGGCTGTA	.	95.0	4.0	78.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
NIN	51199	hgsc.bcm.edu	hg19	14	51208398	51208398	+	Silent	SNP	G	G	T	rs142213280	alternate_allele	TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	NIN	NM_020921	exon25	c.C5350A	p.R1784R	TCATCCGGGACAT	.	80.0	29.0	56.0	0.0	.	475	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
PLD4	122618	hgsc.bcm.edu	hg19	14	105395668	105395668	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PLD4	NM_138790	exon5	c.C493T	p.Q165X	AAGCTGCAGCAGC	.	171.0	67.0	123.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50904942	50904942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	TRPM7	NM_017672	exon16	c.C1855T	p.P619S	GATAAGGAAAGCG	.	79.0	30.0	59.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
THSD4	79875	hgsc.bcm.edu	hg19	15	72037466	72037466	+	Missense_Mutation	SNP	G	G	A	rs374464107		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	THSD4	NM_024817	exon11	c.G1928A	p.R643H	TTTTCCGCTGTGT	.	64.0	18.0	52.0	0.0	.	75	.	.	.	weak	.	.	PASS	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27751558	27751558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	KIAA0556	NM_015202	exon15	c.C1940T	p.A647V	AGATGGCTGGTGC	.	106.0	6.0	98.0	0.0	.	348	.	.	.	none	.	.	PASS	Atlas-SNP
CTCF	10664	hgsc.bcm.edu	hg19	16	67645250	67645250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CTCF	NM_006565	exon3	c.A515G	p.N172S	GGGCCAATGGAGA	.	256.0	105.0	204.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7579355	7579355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	TP53_ENST00000455263,NS,carcinoma,0,38	TP53	NM_000546	exon4	c.T332C	p.L111P	AAGCCCAGACGGA	.	123.0	74.0	148.0	0.0	.	33396	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO47	494188	hgsc.bcm.edu	hg19	17	37099134	37099134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	FBXO47	NM_001008777	exon9	c.T980A	p.L327H	ATTAGGAGACGTG	.	103.0	21.0	78.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
RAB40B	10966	hgsc.bcm.edu	hg19	17	80656364	80656364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	RAB40B	NM_006822	exon1	c.G109C	p.G37R	CCGCGCCATCCTG	.	92.0	22.0	86.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21530086	21530086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	LAMA3	NM_198129	exon72	c.C9605T	p.P3202L	GTCAGCCCGGGAA	.	32.0	18.0	72.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
CALR	811	hgsc.bcm.edu	hg19	19	13050917	13050917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	CALR	NM_004343	exon4	c.T448C	p.Y150H	TTCAACTACAAGG	.	155.0	10.0	105.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
GADD45GIP1	90480	hgsc.bcm.edu	hg19	19	13065098	13065098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	GADD45GIP1	NM_052850	exon2	c.A593C	p.K198T	TCCTTCTTCCGTT	.	113.0	10.0	92.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
PGLYRP2	114770	hgsc.bcm.edu	hg19	19	15586537	15586537	+	Missense_Mutation	SNP	C	C	A	rs145689498	alternate_allele	TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PGLYRP2	NM_052890	exon2	c.G944T	p.R315L	TTGCTGCGGAACC	.	74.0	36.0	67.0	0.0	.	116	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40900916	40900916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PRX	NM_181882	exon7	c.G3343T	p.A1115S	CCACAGCCCCCTC	.	35.0	10.0	31.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55450484	55450484	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	NLRP7	NM_001127255	exon4	c.T1703A	p.L568Q	TCCTTCAGGTCGG	.	82.0	14.0	53.0	0.0	.	411	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF583	147949	hgsc.bcm.edu	hg19	19	56935542	56935542	+	Silent	SNP	A	A	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ZNF583	NM_001159861	exon5	c.A1515T	p.G505G	TAGTGGATCTCTT	.	55.0	24.0	43.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	hg19	20	3652297	3652297	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ADAM33	NM_025220	exon16	c.C1836G	p.L612L	ACTGGGGAGTGCC	.	47.0	19.0	44.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
ESF1	51575	hgsc.bcm.edu	hg19	20	13763687	13763687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	ESF1	NM_001276380	exon2	c.A100T	p.I34F	TGTCAATTTTGAC	.	93.0	35.0	62.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
TUBB1	81027	hgsc.bcm.edu	hg19	20	57599619	57599619	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	TUBB1	NM_030773	exon4	c.T1137C	p.N379N	CTTTAATAGGGTC	.	70.0	25.0	44.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
TCP10L	140290	hgsc.bcm.edu	hg19	21	33956569	33956569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	TCP10L	NM_144659	exon2	c.C46T	p.H16Y	CTGGGTGGGTGCC	.	72.0	21.0	58.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47546102	47546102	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	COL6A2	NM_058175	exon26	c.C2373T	p.D791D	CTCCGACCTGGTC	.	34.0	10.0	26.0	0.0	.	351	.	.	.	none	.	.	PASS	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41527606	41527606	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	EP300	NM_001429	exon6	c.T1497C	p.S499S	GCAGTCTCCCCAA	.	97.0	16.0	78.0	0.0	.	367	.	.	.	none	.	.	PASS	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	hg19	22	50555698	50555698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	MOV10L1,rectum,carcinoma,0,1	MOV10L1	NM_018995	exon9	c.G1372T	p.E458X	GCGCGCGAACCAT	.	110.0	36.0	113.0	2.0	.	238	.	.	.	none	.	.	PASS	Atlas-SNP
FANCB	2187	hgsc.bcm.edu	hg19	X	14862799	14862799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	FANCB	NM_152633	exon8	c.C1991T	p.S664L	CCGGGTGATGTGA	.	118.0	89.0	119.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
GPKOW	27238	hgsc.bcm.edu	hg19	X	48979991	48979991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	GPKOW	NM_015698	exon1	c.G82T	p.A28S	TCCGTGCGGACGT	.	222.0	172.0	169.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128582334	128582334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	SMARCA1	NM_003069	exon24	c.G3117C	p.K1039N	CCGTTTCTTCTTT	.	66.0	46.0	54.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7236	7236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	.	ENST00000361624	exon1	c.G1333A	p.D445N	TACCCCGATGCAT	.	190.0	9.0	8.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.,2	NEFH	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	270.0	55.0	179.0	0.0	.	178	.	0.203704	0	none	.	.	PASS	Atlas-INDEL
DENND5A	23258	hgsc.bcm.edu	hg19	11	9187516	9187517	+	Splice_Site	INS	-	-	AGAA	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	DENND5A	NM_001243254	exon12	c.2152-2->TTCT	.	.	.	80.0	20.0	61.0	0.0	.	84	.	0.25	0	none	.	.	PASS	Atlas-Indel,Pindel
SECISBP2	79048	hgsc.bcm.edu	hg19	9	91961869	91961869	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	SECISBP2	NM_024077	exon11	c.1507delA	p.T503fs	.	.	95.0	27.0	63.0	0.0	.	64	.	0.284211	0	none	.	.	PASS	Atlas-Indel,Pindel
FKBP11	51303	hgsc.bcm.edu	hg19	12	49317595	49317596	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	FKBP11	NM_016594	exon5	c.358_359del	p.120_120del	.	.	107.0	41.0	103.0	0.0	.	12	.	0.383178	0	none	.	.	PASS	Atlas-Indel,Pindel
NLGN1	22871	hgsc.bcm.edu	hg19	3	173997169	173997169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	NLGN1,NS,carcinoma,0,1	NLGN1	NM_014932	exon6	c.1377delG	p.L459fs	.	.	180.0	50.0	153.0	0.0	.	209	.	0.277778	0	none	.	.	PASS	Atlas-Indel,Pindel
BTG2	7832	hgsc.bcm.edu	hg19	1	203276494	203276495	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	BTG2	NM_006763	exon2	c.405_406insA	p.L135fs	.	.	85.0	22.0	55.0	0.0	.	16	.	0.258824	0	none	.	.	PASS	Atlas-Indel,Pindel
TCF25	22980	hgsc.bcm.edu	hg19	16	89940088	89940089	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	TCF25	NM_014972	exon1	c.13_14insC	p.A5fs	.	.	93.0	36.0	88.0	0.0	.	61	.	0.387097	0	none	.	.	PASS	Atlas-Indel,Pindel
DUOX2	50506	hgsc.bcm.edu	hg19	15	45402911	45402913	+	Splice_Site	DEL	GAG	GAG	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	DUOX2	.	.	.	.	.	.	225.0	63.0	180.0	0.0	.	137	.	0.28	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40422123	40422134	+	In_Frame_Del	DEL	TCCTCTTCAATG	TCCTCTTCAATG	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	TCCTCTTCAATG	TCCTCTTCAATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	SLC2A13	NM_052885	exon3	c.895_906del	p.299_302del	.	.	46.0	12.0	67.0	0.0	.	91	.	0.26087	0	none	.	.	PASS	Atlas-Indel,Pindel
PBRM1	55193	hgsc.bcm.edu	hg19	3	52613184	52613184	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9K3-01A-11D-A42J-10	TCGA-5P-A9K3-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	84a1aab7-7e50-4015-accb-e32579b2fc62	fe756f10-d087-48bf-984d-e9ba64bab839	.	PBRM1	NM_018313	exon22	c.3345delT	p.N1115fs	.	.	82.0	61.0	75.0	0.0	.	1252	.	0.743902	0	none	.	.	PASS	Atlas-Indel,Pindel
