Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRDM2	7799	hgsc.bcm.edu	hg19	1	14105118	14105118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PRDM2	NM_015866	exon8	c.G828T	p.E276D	GGAGGAGGATGAA	.	139.0	9.0	135.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	hg19	1	14105121	14105121	+	Missense_Mutation	SNP	T	T	A	rs199679022	bycluster;by1000genomes;alternate_allele	TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	PRDM2,colon,carcinoma,0,1	PRDM2	NM_015866	exon8	c.T831A	p.D277E	GGAGGATGAAGAA	.	139.0	14.0	134.0	0.0	.	147	.	.	.	alt	T|0.999;G|0.001	.	PASS	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43896951	43896951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SZT2	NM_015284	exon33	c.C4761A	p.S1587R	TGAAAGCAGTGCT	.	114.0	32.0	156.0	0.0	.	383	.	.	.	none	.	.	PASS	Atlas-SNP
DIO1	1733	hgsc.bcm.edu	hg19	1	54371929	54371929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	DIO1	NM_001039715	exon2	c.A499G	p.R167G	CCTGAGAGGCTCT	.	143.0	6.0	146.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186880403	186880403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PLA2G4A	NM_024420	exon7	c.G440A	p.S147N	GATTTAGTATGGC	.	94.0	20.0	82.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R5A	5525	hgsc.bcm.edu	hg19	1	212534084	212534084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PPP2R5A	NM_006243	exon13	c.G1433C	p.S478T	TGCACAGTATTCT	.	616.0	68.0	612.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
PGBD2	267002	hgsc.bcm.edu	hg19	1	249210858	249210858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PGBD2	NM_170725	exon3	c.G75T	p.E25D	GCTTGAGGTTCTG	.	101.0	5.0	91.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207170563	207170563	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZDBF2	NM_020923	exon5	c.T1311G	p.D437E	TACTGATGTACAG	.	92.0	7.0	87.0	0.0	.	531	.	.	.	none	.	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210752974	210752974	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	UNC80	NM_032504	exon26	c.G4272A	p.E1424E	AGTCGAGGAGAAG	.	197.0	61.0	205.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
FAM134A	79137	hgsc.bcm.edu	hg19	2	220044862	220044862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	FAM134A	NM_024293	exon4	c.C450G	p.H150Q	GCCGCACCTGCTG	.	145.0	49.0	145.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	hg19	2	225370771	225370771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CUL3	NM_001257198	exon8	c.A1126T	p.I376F	CCGCAATAGTTTG	.	274.0	89.0	318.0	1.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230656640	230656640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TRIP12	NM_004238	exon28	c.G4132A	p.D1378N	CATCATCTGTGGA	.	163.0	51.0	205.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230656641	230656641	+	Silent	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TRIP12	NM_004238	exon28	c.A4131T	p.T1377T	ATCATCTGTGGAT	.	161.0	49.0	206.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4704871	4704871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ITPR1	NM_001099952	exon16	c.A1535G	p.E512G	TGAGAGAACAGAA	.	107.0	11.0	102.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12856913	12856913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CAND2	NM_001162499	exon8	c.T1280A	p.L427H	GCAACCTCCATAT	.	418.0	137.0	419.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
CCR9	10803	hgsc.bcm.edu	hg19	3	45943247	45943247	+	Silent	SNP	A	A	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CCR9	NM_031200	exon3	c.A967C	p.R323R	GGTGAGAGATTCC	.	91.0	32.0	101.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
HYAL2	8692	hgsc.bcm.edu	hg19	3	50357467	50357467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	HYAL2	NM_033158	exon3	c.C454T	p.R152C	ACCGGCGATACAC	.	59.0	19.0	52.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
GPR128	84873	hgsc.bcm.edu	hg19	3	100354648	100354648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	GPR128	NM_032787	exon5	c.C575G	p.T192S	TCAACACTTCCAG	.	178.0	71.0	182.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1524	57650	hgsc.bcm.edu	hg19	3	108271221	108271221	+	Splice_Site	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	KIAA1524	NM_020890	exon21	c.2408-1G>T	.	GCAAATCTTAAAA	.	34.0	15.0	39.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	hg19	3	118865256	118865256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	C3orf30	NM_152539	exon1	c.G220C	p.G74R	ACCAACGGAGTAG	.	162.0	70.0	174.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124527967	124527967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ITGB5	NM_002213	exon9	c.C1165A	p.Q389K	CAGGCTGATCCCA	.	117.0	25.0	109.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	hg19	4	5838634	5838634	+	Splice_Site	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CRMP1	NM_001014809	exon11	c.1311-1G>T	.	TCCCCACTGGCAA	.	47.0	7.0	43.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151935618	151935618	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	LRBA	NM_006726	exon2	c.A177G	p.E59E	GGATACTTCTCCA	.	152.0	40.0	183.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC110	256309	hgsc.bcm.edu	hg19	4	186379896	186379896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CCDC110	NM_152775	exon6	c.G1845C	p.Q615H	TTTTAGCTGGATT	.	64.0	15.0	73.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140215838	140215838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	PCDHA7_ENST00000525929,colon,carcinoma,0,2	PCDHA7	NM_031852	exon1	c.G1870A	p.V624M	TTCCGCGTGGGGC	.	97.0	34.0	97.0	0.0	.	367	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141331117	141331117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PCDH12	NM_016580	exon2	c.A2919T	p.Q973H	CTGGAATTGGCCC	.	104.0	22.0	82.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	hg19	5	170289055	170289055	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	RANBP17	NM_022897	exon1	c.G18A	p.Q6Q	CTTCCAGGTCAGT	.	6.0	5.0	5.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0319	9856	hgsc.bcm.edu	hg19	6	24551749	24551749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	KIAA0319	NM_001168375	exon20	c.A2953C	p.K985Q	TCCTTTTTTGTCT	.	63.0	22.0	75.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99374476	99374476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	FBXL4	NM_012160	exon3	c.C389T	p.T130I	TCAAAAGTAAGTT	.	123.0	41.0	161.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
SESN1	27244	hgsc.bcm.edu	hg19	6	109319902	109319902	+	Silent	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SESN1	NM_014454	exon5	c.A786C	p.V262V	TAAAACTACTGCA	.	126.0	31.0	133.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
TUBE1	51175	hgsc.bcm.edu	hg19	6	112392751	112392751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TUBE1	NM_016262	exon12	c.A1292G	p.Q431R	TCAACTTGTAGAT	.	59.0	13.0	78.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
TSPYL4	23270	hgsc.bcm.edu	hg19	6	116574508	116574508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TSPYL4	NM_021648	exon1	c.G664T	p.D222Y	CCCTGTCAGCCTG	.	73.0	24.0	74.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146262786	146262786	+	Silent	SNP	A	A	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SHPRH	NM_173082	exon10	c.T2463A	p.A821A	CATCTGAGCTTCA	.	60.0	23.0	84.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
VOPP1	81552	hgsc.bcm.edu	hg19	7	55560085	55560085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	VOPP1	NM_030796	exon4	c.T218C	p.F73S	CAGCAGAAAAGCA	.	149.0	35.0	163.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF713	349075	hgsc.bcm.edu	hg19	7	56006915	56006915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZNF713	NM_182633	exon4	c.A509C	p.N170T	AGTGTAATAAATT	.	184.0	48.0	245.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	MET,rectum,carcinoma,+1,5	MET	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	136.0	45.0	138.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117375153	117375153	+	Silent	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CTTNBP2	NM_033427	exon16	c.A3690T	p.G1230G	TCCATTTCCTGAA	.	188.0	60.0	181.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121616253	121616253	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PTPRZ1	NM_001206838	exon5	c.C483T	p.D161D	TGCGGACCGATTT	.	75.0	27.0	53.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A1	6561	hgsc.bcm.edu	hg19	7	122839917	122839917	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SLC13A1	NM_022444	exon1	c.C84G	p.I28M	GAGGACGATGGGC	.	95.0	31.0	75.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151877112	151877112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	MLL3	NM_170606	exon37	c.C7249A	p.P2417T	GCCCTGGATGAGG	.	119.0	41.0	122.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF572	137209	hgsc.bcm.edu	hg19	8	125988832	125988832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZNF572	NM_152412	exon3	c.C322A	p.H108N	CCCAATCACCAGG	.	156.0	44.0	224.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	hg19	9	6012658	6012658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	RANBP6,bladder,carcinoma,0,7	RANBP6	NM_012416	exon1	c.A2950C	p.I984L	TCCCTATTGCTGA	.	94.0	5.0	106.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	hg19	9	6012698	6012698	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	RANBP6	NM_012416	exon1	c.C2910A	p.T970T	TTTTTTGGTTTTG	.	75.0	5.0	81.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
PTPLAD2	401494	hgsc.bcm.edu	hg19	9	21008120	21008120	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PTPLAD2	NM_001010915	exon6	c.T516C	p.P172P	AAAATAAGGCAGC	.	162.0	51.0	178.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
NOL6	65083	hgsc.bcm.edu	hg19	9	33467722	33467722	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	NOL6	NM_022917	exon12	c.C1569T	p.N523N	CAGCAGGTTCAGC	.	68.0	22.0	56.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB5	9925	hgsc.bcm.edu	hg19	9	37442100	37442100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZBTB5	NM_014872	exon2	c.G449A	p.G150E	CTTAGTCCCAGCT	.	57.0	19.0	68.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
GFI1B	8328	hgsc.bcm.edu	hg19	9	135863782	135863782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	GFI1B	NM_001135031	exon4	c.C437T	p.T146I	CCAGCACTGAGCC	.	52.0	18.0	52.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
AGAP11	119385	hgsc.bcm.edu	hg19	10	88768386	88768386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	.	NM_133447	exon12	c.G377C	p.G126A	AACAGGGCATGCT	.	114.0	42.0	121.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105990410	105990410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	WDR96	NM_025145	exon2	c.A257G	p.K86R	TTTAGCTTCCGGT	.	98.0	34.0	121.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117228744	117228744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ATRNL1	NM_207303	exon24	c.G3559T	p.D1187Y	TACAGAGATAGTT	.	191.0	50.0	234.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32955850	32955850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	QSER1	NM_001076786	exon4	c.A2659G	p.K887E	GATTCTAAATCTC	.	121.0	38.0	123.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32955852	32955852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	QSER1	NM_001076786	exon4	c.A2661T	p.K887N	TTCTAAATCTCAT	.	119.0	38.0	124.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
IGHMBP2	3508	hgsc.bcm.edu	hg19	11	68703885	68703885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	IGHMBP2	NM_002180	exon13	c.T1937G	p.I646S	ACGATATTGTCCC	.	131.0	43.0	98.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
SIDT2	51092	hgsc.bcm.edu	hg19	11	117064631	117064631	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SIDT2	NM_001040455	exon24	c.C2274T	p.V758V	CGTGGTCTGGGGC	.	39.0	10.0	41.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
RNF26	79102	hgsc.bcm.edu	hg19	11	119206568	119206568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	RNF26	NM_032015	exon1	c.C736A	p.H246N	GTGTTGCATCCGG	.	23.0	4.0	25.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
B3GAT1	27087	hgsc.bcm.edu	hg19	11	134253770	134253770	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	B3GAT1	NM_054025	exon3	c.C425G	p.T142R	AGGTGCGTGTAGT	.	40.0	5.0	53.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70974991	70974991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PTPRB	NM_001109754	exon10	c.A2403C	p.E801D	GTAAAATTCTACG	.	161.0	76.0	151.0	0.0	.	676	.	.	.	none	.	.	PASS	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	hg19	12	123034324	123034324	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	KNTC1	NM_014708	exon13	c.C999A	p.L333L	AAACCTCATGGTT	.	122.0	54.0	98.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
ZIC5	85416	hgsc.bcm.edu	hg19	13	100623797	100623797	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZIC5	NM_033132	exon1	c.G133C	p.A45P	CCTGAGCCGTTGC	.	69.0	18.0	65.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
ZIC5	85416	hgsc.bcm.edu	hg19	13	100623798	100623798	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZIC5	NM_033132	exon1	c.G132A	p.T44T	CTGAGCCGTTGCC	.	69.0	16.0	66.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TPP2	7174	hgsc.bcm.edu	hg19	13	103289504	103289504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TPP2	NM_003291	exon14	c.G1751A	p.S584N	GTCCCAGCCATTT	.	68.0	22.0	59.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64494496	64494496	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SYNE2	NM_182914	exon43	c.T6699C	p.L2233L	AAGTCTTCTTCAA	.	156.0	55.0	165.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
CPSF2	53981	hgsc.bcm.edu	hg19	14	92627590	92627590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CPSF2	NM_017437	exon15	c.A2256T	p.R752S	CCGCAGAGTAAGT	.	102.0	32.0	115.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2112991	2112991	+	Silent	SNP	C	C	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TSC2	NM_001114382	exon14	c.C1380G	p.A460A	AGGCGCCGTGCGC	.	67.0	14.0	40.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72991450	72991450	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZFHX3	NM_006885	exon2	c.C2595T	p.Y865Y	GGCCAGGTAGTAT	.	73.0	26.0	77.0	0.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8137889	8137889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CTC1	NM_025099	exon10	c.G1702A	p.D568N	TAGGGTCAAAGGA	.	188.0	53.0	173.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10299694	10299694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	MYH8	NM_002472	exon33	c.G4606T	p.V1536L	GTTCTACTTGCTT	.	68.0	19.0	80.0	0.0	.	346	.	.	.	none	.	.	PASS	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	hg19	17	26906847	26906847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SPAG5	NM_006461	exon17	c.T2806G	p.S936A	GAGTTGATTCTGG	.	111.0	29.0	132.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21343469	21343469	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	LAMA3	NM_001127717	exon8	c.G1164T	p.G388G	TGGAGGGGTCTGC	.	84.0	23.0	96.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
C18orf25	147339	hgsc.bcm.edu	hg19	18	43796193	43796193	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	C18orf25	NM_145055	exon2	c.A347T	p.E116V	AGAATGAACCCTC	.	144.0	42.0	146.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60646284	60646284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PHLPP1	NM_194449	exon17	c.G4774T	p.D1592Y	GCCAGTGATGAGG	.	103.0	27.0	110.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6854009	6854009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	VAV1	NM_005428	exon26	c.C2384T	p.A795V	TCTGCGCCCGAGA	.	38.0	14.0	48.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	hg19	19	14004035	14004035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	C19orf57	NM_024323	exon4	c.T208C	p.S70P	CAGGGGAGCTATG	.	94.0	32.0	92.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	hg19	19	14004037	14004037	+	Splice_Site	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	C19orf57	NM_024323	exon5	c.207-1G>A	.	GGGGAGCTATGTA	.	93.0	32.0	88.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
ISYNA1	51477	hgsc.bcm.edu	hg19	19	18545729	18545729	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ISYNA1	NM_016368	exon11	c.C1671A	p.T557T	TCAGGTGGTGGGC	.	85.0	29.0	69.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935607	30935607	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZNF536	NM_014717	exon2	c.C1138A	p.R380R	TGCGGCCGGCGCT	.	82.0	25.0	68.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
ECH1	1891	hgsc.bcm.edu	hg19	19	39321795	39321795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ECH1	NM_001398	exon3	c.A272C	p.E91A	AAGCACTCTACCA	.	76.0	28.0	94.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	hg19	19	40721175	40721175	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	MAP3K10	NM_002446	exon10	c.G2841C	p.L947L	GCCCCTGTGCGGG	.	122.0	40.0	115.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CEACAM5	1048	hgsc.bcm.edu	hg19	19	42219064	42219064	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CEACAM5	NM_004363	exon3	c.T599A	p.L200H	GGACCCTCACTCT	.	138.0	34.0	144.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
SYMPK	8189	hgsc.bcm.edu	hg19	19	46324744	46324744	+	Splice_Site	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	SYMPK,NS,carcinoma,0,1	SYMPK	NM_004819	exon23	c.2792-1G>A	.	CCTCACCTGCAGC	.	40.0	14.0	49.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	hg19	19	46888119	46888119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	PPP5C,bladder,carcinoma,0,1	PPP5C	NM_006247	exon7	c.T857A	p.L286H	TCACCCTTTTCGG	.	67.0	14.0	56.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R1A	5518	hgsc.bcm.edu	hg19	19	52719042	52719042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PPP2R1A	NM_014225	exon7	c.C818T	p.A273V	AGAAAGCAGTGGG	.	77.0	27.0	73.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56028874	56028874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SSC5D	NM_001144950	exon14	c.T3231A	p.S1077R	CTCCAGTGTGGTT	.	101.0	33.0	95.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SDCBP2	27111	hgsc.bcm.edu	hg19	20	1293357	1293357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SDCBP2	NM_080489	exon6	c.G434T	p.G145V	CGCAGCCCCACAA	.	49.0	19.0	43.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	hg19	20	39990966	39990966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	EMILIN3	NM_052846	exon4	c.C1243A	p.P415T	CGGCCGGGGCACC	.	51.0	18.0	49.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	hg19	21	44838412	44838412	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	SIK1	NM_173354	exon12	c.T1472A	p.V491D	GGGGAGACGACTA	.	90.0	23.0	92.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
TST	7263	hgsc.bcm.edu	hg19	22	37407323	37407323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TST	NM_003312	exon3	c.C639A	p.F213L	GTCCATGAAAGGC	.	100.0	41.0	97.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CD33	945	hgsc.bcm.edu	hg19	19	51728819	51728820	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	CD33	NM_001177608	exon2	c.383_384insT	p.S128fs	.	.	120.0	35.0	111.0	0.0	.	55	.	0.291667	0	none	.	.	PASS	Atlas-Indel,Pindel
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11856532	11856534	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	ZC3H7A,colon,carcinoma,+1,1	ZC3H7A	NM_014153	exon17	c.2073_2075del	p.691_692del	.	.	55.0	11.0	64.0	0.0	.	72	.	0.2	0	none	.	.	PASS	Atlas-INDEL
PEX5	5830	hgsc.bcm.edu	hg19	12	7351708	7351710	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PEX5	NM_001131023	exon6	c.594_596del	p.198_199del	.	.	62.0	13.0	53.0	0.0	.	63	.	0.209677	0	none	.	.	PASS	Atlas-Indel,Pindel
NVL	4931	hgsc.bcm.edu	hg19	1	224455838	224455838	+	Splice_Site	DEL	A	A	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	NVL	NM_206840	exon18	c.1765-2T>-	.	.	.	80.0	22.0	114.0	0.0	.	74	.	0.275	0	none	.	.	PASS	Atlas-Indel,Pindel
TRAPPC6B	122553	hgsc.bcm.edu	hg19	14	39627583	39627583	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TRAPPC6B	NM_001079537	exon3	c.174delC	p.F58fs	.	.	64.0	29.0	71.0	0.0	.	13	.	0.453125	0	none	.	.	PASS	Atlas-Indel,Pindel
PTGES	9536	hgsc.bcm.edu	hg19	9	132502088	132502090	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PTGES	NM_004878	exon3	c.260_262del	p.87_88del	.	.	231.0	73.0	244.0	0.0	.	7	.	0.316017	0	none	.	.	PASS	Atlas-Indel,Pindel
TBX21	30009	hgsc.bcm.edu	hg19	17	45822709	45822709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TBX21	NM_013351	exon6	c.1584delG	p.Q528fs	.	.	50.0	15.0	51.0	0.0	.	50	.	0.3	0	none	.	.	PASS	Atlas-Indel,Pindel
PRAMEF19	645414	hgsc.bcm.edu	hg19	1	13475225	13475225	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PRAMEF19	NM_001099790	exon3	c.905delA	p.Y302fs	.	.	305.0	92.0	307.0	0.0	.	6	.	0.301639	0	none	.	.	PASS	Atlas-INDEL
MLL3	58508	hgsc.bcm.edu	hg19	7	151919089	151919091	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	MLL3	NM_170606	exon22	c.3495_3497del	p.1165_1166del	.	.	182.0	55.0	228.0	0.0	.	1564	.	0.302198	0	none	.	.	PASS	Atlas-Indel,Pindel
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117335821	117335844	+	In_Frame_Del	DEL	GTTGCTGCCGGGGCTGTTCTCTCT	GTTGCTGCCGGGGCTGTTCTCTCT	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	GTTGCTGCCGGGGCTGTTCTCTCT	GTTGCTGCCGGGGCTGTTCTCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	DSCAML1	NM_020693	exon17	c.3260_3283del	p.1087_1095del	.	.	107.0	30.0	105.0	0.0	.	286	.	0.280374	0	none	.	.	PASS	Atlas-Indel,Pindel
USP43	124739	hgsc.bcm.edu	hg19	17	9559778	9559778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	USP43	NM_001267576	exon2	c.562delG	p.E188fs	.	.	146.0	42.0	157.0	0.0	.	65	.	0.287671	0	none	.	.	PASS	Atlas-Indel,Pindel
HLA-C	3107	hgsc.bcm.edu	hg19	6	31239449	31239450	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	HLA-C	NM_002117	exon2	c.270_271insA	p.K90fs	.	.	133.0	31.0	107.0	0.0	.	92	.	0.233083	0	none	.	.	PASS	Atlas-Indel,Pindel
JAZF1	221895	hgsc.bcm.edu	hg19	7	27872487	27872487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	JAZF1	NM_175061	exon5	c.665delT	p.L222fs	.	.	73.0	20.0	77.0	0.0	.	13	.	0.273973	0	none	.	.	PASS	Atlas-Indel,Pindel
PRAMEF19	645414	hgsc.bcm.edu	hg19	1	13696061	13696061	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PRAMEF19	NM_001099790	exon3	c.905delA	p.Y302fs	.	.	242.0	46.0	323.0	0.0	.	6	.	0.190083	0	none	.	.	PASS	Atlas-Indel,Pindel
TLN2	83660	hgsc.bcm.edu	hg19	15	63112730	63112731	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	TLN2	NM_015059	exon51	c.6923_6924insA	p.T2308fs	.	.	96.0	25.0	91.0	0.0	.	253	.	0.260417	0	none	.	.	PASS	Atlas-Indel,Pindel
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11856530	11856530	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZC3H7A	NM_014153	exon17	c.2077delC	p.Q693fs	.	.	53.0	11.0	64.0	0.0	.	72	.	0.207547	0	none	.	.	PASS	Atlas-INDEL
PABPC3	5042	hgsc.bcm.edu	hg19	13	25670355	25670366	+	In_Frame_Del	DEL	AGCTACCCAACG	AGCTACCCAACG	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	AGCTACCCAACG	AGCTACCCAACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PABPC3	NM_030979	exon1	c.18_29del	p.6_10del	.	.	91.0	16.0	93.0	0.0	.	129	.	0.175824	0	none	.	.	PASS	Atlas-INDEL
PRB4	5545	hgsc.bcm.edu	hg19	12	11461534	11461596	+	Frame_Shift_Del	DEL	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	PRB4	NM_001261399	exon3	c.322_334del	p.108_112del	.	.	123.0	12.0	96.0	0.0	.	59	.	0.098	.	none	.	.	PASS	Pindel
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11856530	11856535	+	In_Frame_Del	DEL	CGCTCC	CGCTCC	-	novel		TCGA-5P-A9KA-01A-11D-A42J-10	TCGA-5P-A9KA-10A-01D-A42M-10	CGCTCC	CGCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5c321a-1ec5-43d8-a9ce-dea256ce836f	88f8e541-dd2d-4548-bad0-c30265b48b79	.	ZC3H7A	NM_014153	exon17	c.2072_2077del	p.691_693del	.	.	56.0	10.0	65.0	0.0	.	72	.	0.179	.	none	.	.	PASS	Pindel
