Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
HMCN1	83872	hgsc.bcm.edu	hg19	1	186114982	186114982	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	HMCN1	NM_031935	exon93	c.G14535T	p.V4845V	TCCTGTGCCAGTT	.	88.0	63.0	112.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC74A	90557	hgsc.bcm.edu	hg19	2	132289289	132289289	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	CCDC74A	NM_001258304	exon4	c.C723T	p.D241D	AGCTGACGTCTCC	.	69.0	42.0	113.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25834646	25834646	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	SEL1L3	NM_015187	exon5	c.C1069T	p.R357X	CCAGTCGAAACCA	.	91.0	39.0	51.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf29	80167	hgsc.bcm.edu	hg19	4	128904113	128904113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	C4orf29	NM_001039717	exon2	c.G3A	p.M1I	ACTGATGGGTGTG	.	110.0	43.0	60.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	hg19	5	160973398	160973398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	GABRB2	NM_021911	exon3	c.G99A	p.M33I	CAGCGACATATTA	.	137.0	19.0	104.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	FAM46A	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	30.0	5.0	38.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	hg19	7	86394802	86394802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	GRM3	NM_000840	exon2	c.G341A	p.R114K	TTGTCAGGGCATC	.	157.0	15.0	99.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB4	2050	hgsc.bcm.edu	hg19	7	100410509	100410509	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	EPHB4	NM_004444	exon12	c.G1978T	p.E660X	GAAACTCACGCCG	.	75.0	34.0	74.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150771197	150771197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	SLC4A2	NM_003040	exon17	c.G2607A	p.M869I	GAACATGACATGG	.	213.0	71.0	186.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	2037960	2037960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	MYOM2	NM_003970	exon15	c.G1774T	p.G592C	CGGCATGGCCTGA	.	65.0	33.0	63.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79465477	79465477	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	PRUNE2	NM_015225	exon3	c.C246T	p.S82S	TGATTCGGAAATA	.	196.0	76.0	151.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM22	10346	hgsc.bcm.edu	hg19	11	5730402	5730402	+	Missense_Mutation	SNP	G	G	A	rs199987600		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	TRIM22,NS,carcinoma,0,1	TRIM22	NM_006074	exon8	c.G1021A	p.A341T	TTTTCTGCTTTTG	.	127.0	44.0	126.0	0.0	.	66	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411970	6411970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	SMPD1	NM_000543	exon1	c.G142T	p.A48S	GCGCTGGCTCTGT	.	119.0	6.0	90.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49438022	49438022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	MLL2	NM_003482	exon21	c.C5149A	p.Q1717K	CCGCCTGTGCAGC	.	96.0	43.0	49.0	0.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
GRASP	160622	hgsc.bcm.edu	hg19	12	52408635	52408635	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	GRASP	NM_181711	exon8	c.C840T	p.A280A	CGACGCCGACGAC	.	10.0	6.0	7.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
GPR137C	283554	hgsc.bcm.edu	hg19	14	53101695	53101695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	GPR137C	NM_001099652	exon7	c.G1152T	p.M384I	CACCATGACTGGG	.	156.0	58.0	103.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
DUOXA1	90527	hgsc.bcm.edu	hg19	15	45415103	45415103	+	Missense_Mutation	SNP	G	G	A	rs374411208		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	DUOXA1	NM_144565	exon4	c.C110T	p.T37M	ATGAACGTGGCCA	.	174.0	75.0	142.0	0.0	.	32	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC13A5	284111	hgsc.bcm.edu	hg19	17	6594200	6594200	+	Silent	SNP	C	C	T	rs138802643		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	SLC13A5	NM_001143838	exon10	c.G1335A	p.P445P	GGCTGCCGGGGGC	.	47.0	38.0	51.0	0.0	.	57	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
TAC4	255061	hgsc.bcm.edu	hg19	17	47921450	47921450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	TAC4	NM_170685	exon2	c.G193T	p.G65W	TCAGCCCAAAGAA	.	55.0	40.0	67.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42866746	42866746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	MEGF8	NM_001271938	exon34	c.A6055G	p.T2019A	AAGAGGACAGGTG	.	43.0	11.0	38.0	0.0	.	358	.	.	.	none	.	.	PASS	Atlas-SNP
KCNG1	3755	hgsc.bcm.edu	hg19	20	49626294	49626294	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	KCNG1	NM_002237	exon2	c.C582T	p.R194R	GCTGTCGCGGCCC	.	53.0	15.0	35.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
UBXN2B	137886	hgsc.bcm.edu	hg19	8	59343157	59343158	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	UBXN2B	NM_001077619	exon3	c.268_269insAAG	p.K90delinsKE	.	.	453.0	54.0	319.0	0.0	.	36	.	0.119205	0	none	.	.	PASS	Atlas-Indel,Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7577515	7577517	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	TP53_ENST00000413465,NS,carcinoma,0,1	TP53	NM_001126112	exon7	c.765_767del	p.255_256del	.	.	70.0	18.0	88.0	0.0	.	33396	.	0.257143	0	none	.	.	PASS	Atlas-Indel,Pindel
MCTP2	55784	hgsc.bcm.edu	hg19	15	95001475	95001477	+	Frame_Shift_Del	DEL	AGT	AGT	-	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	AGT	AGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	MCTP2	NM_018349	exon19	c.2359_2360del	p.787_787del	.	.	129.0	32.0	93.0	0.0	.	122	.	0.248062	0	none	.	.	PASS	Atlas-Indel,Pindel
CORIN	10699	hgsc.bcm.edu	hg19	4	47809067	47809070	+	Splice_Site	DEL	AAAG	AAAG	-	novel		TCGA-5P-A9KH-01A-11D-A42J-10	TCGA-5P-A9KH-10A-01D-A42M-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d91e36f3-e4a2-4af3-802a-3148b09be900	ccc45b0a-b066-47dd-934b-6f892b6c61a4	.	CORIN	.	.	.	.	.	.	195.0	11.0	133.0	0.0	.	154	.	0.056	.	none	.	.	PASS	Pindel
