Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PLA2G2D	26279	hgsc.bcm.edu	hg19	1	20440719	20440719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PLA2G2D	NM_012400	exon4	c.G326A	p.C109Y	CAGGCACACAGCT	.	61.0	15.0	76.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
AGL	178	hgsc.bcm.edu	hg19	1	100327977	100327977	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	AGL	NM_000644	exon4	c.C458G	p.S153X	AAGAATCAGGTAA	.	102.0	23.0	111.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156843561	156843561	+	Silent	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NTRK1	NM_001012331	exon8	c.C987T	p.F329F	CATCTTCACTGAG	.	25.0	8.0	41.0	0.0	.	287	.	.	.	none	.	.	PASS	Atlas-SNP
GORAB	92344	hgsc.bcm.edu	hg19	1	170501324	170501324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	GORAB	NM_152281	exon1	c.C35T	p.A12V	CGGCTGCGAGATT	.	95.0	16.0	113.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
RGS21	431704	hgsc.bcm.edu	hg19	1	192321246	192321246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	RGS21	NM_001039152	exon4	c.C158A	p.A53D	GGCTTGCCTGTGA	.	51.0	11.0	57.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CDC73	79577	hgsc.bcm.edu	hg19	1	193099338	193099338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	CDC73,caecum,carcinoma,0,1	CDC73	NM_024529	exon3	c.G272A	p.R91Q	CTGATCGAAAAGA	.	61.0	7.0	68.0	0.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
SNRPE	6635	hgsc.bcm.edu	hg19	1	203832834	203832834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SNRPE	NM_003094	exon3	c.G125A	p.R42Q	ATATGCGGATAGA	.	245.0	87.0	238.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225599084	225599084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LBR	NM_194442	exon9	c.T1143A	p.F381L	GAGATCAAAAGTA	.	153.0	28.0	147.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
HYAL1	3373	hgsc.bcm.edu	hg19	3	50340364	50340364	+	Missense_Mutation	SNP	G	G	C	rs370239620	alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	HYAL1	NM_033159	exon2	c.C24G	p.I8M	GGCGCAGATGGGA	.	46.0	6.0	60.0	0.0	.	28	.	.	.	alt	.	.	PASS	Atlas-SNP
LMLN	89782	hgsc.bcm.edu	hg19	3	197687277	197687277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LMLN	NM_001136049	exon1	c.C185A	p.P62H	GTTCCCCTCCCTG	.	133.0	6.0	172.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
DCK	1633	hgsc.bcm.edu	hg19	4	71892401	71892401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	DCK	NM_000788	exon6	c.C685A	p.Q229K	TATCTTCAAGAGG	.	39.0	13.0	70.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126371574	126371574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FAT4	NM_024582	exon9	c.G9403A	p.G3135S	GAAGAAGGCATTT	.	37.0	15.0	89.0	0.0	.	1752	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	hg19	6	26104205	26104205	+	Silent	SNP	C	C	G	rs139978722	bycluster;byfrequency;alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	HIST1H4C	NM_003542	exon1	c.C30G	p.G10G	AAAAGGCTTGGGG	.	88.0	21.0	115.0	0.0	.	14	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
ZKSCAN8	7745	hgsc.bcm.edu	hg19	6	28116192	28116192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	.	NM_006298	exon2	c.G7A	p.E3K	ATGGCTGAAGAAT	.	35.0	12.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CRISP3	10321	hgsc.bcm.edu	hg19	6	49696475	49696475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CRISP3	NM_001190986	exon8	c.G775A	p.A259T	AGGAGGCCTTGCA	.	120.0	38.0	150.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70990561	70990561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	COL9A1	NM_001851	exon10	c.C929T	p.P310L	TTTCCCGGTTCAC	.	28.0	9.0	33.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	hg19	6	76660465	76660465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1	NM_001563	exon13	c.C1638G	p.F546L	CTCCAAGAAATGA	.	63.0	15.0	87.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	hg19	6	76660529	76660529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1	NM_001563	exon13	c.C1574T	p.S525F	GTGTCAGACAGAT	.	40.0	9.0	54.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	hg19	6	76660533	76660533	+	Silent	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1	NM_001563	exon13	c.C1570T	p.L524L	CAGACAGATCCAT	.	39.0	10.0	52.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	hg19	6	76660636	76660636	+	Silent	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1	NM_001563	exon13	c.C1467T	p.I489I	TTGGCTGATTGCA	.	78.0	20.0	104.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112454683	112454683	+	Silent	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LAMA4	NM_001105206	exon27	c.C3564G	p.L1188L	TGCTCTGAGGGCC	.	119.0	29.0	154.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
MSRA	4482	hgsc.bcm.edu	hg19	8	9912062	9912062	+	Silent	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSRA	NM_012331	exon1	c.C36T	p.L12L	GCTCCTCCTCCTC	.	43.0	16.0	67.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
MSRA	4482	hgsc.bcm.edu	hg19	8	9912103	9912103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSRA	NM_012331	exon1	c.C77T	p.S26L	GCAACTCGGCCTC	.	51.0	15.0	69.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	hg19	9	104170234	104170234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	ZNF189	NM_003452	exon3	c.G184C	p.E62Q	AAGGATGAGGAGC	.	17.0	5.0	29.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
OR10Q1	219960	hgsc.bcm.edu	hg19	11	57996225	57996225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	OR10Q1	NM_001004471	exon1	c.G123A	p.M41I	GAGGATCATCAAG	.	106.0	28.0	129.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF385A	25946	hgsc.bcm.edu	hg19	12	54764720	54764720	+	Silent	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	ZNF385A	NM_001130967	exon6	c.A825G	p.Q275Q	TTTCAGTTGGACC	.	122.0	34.0	217.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
C12orf74	338809	hgsc.bcm.edu	hg19	12	93100691	93100691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	C12orf74	NM_001037671	exon2	c.C284G	p.S95C	AGGATTCTTCACA	.	87.0	23.0	138.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
COASY	80347	hgsc.bcm.edu	hg19	17	40717244	40717244	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	COASY	NM_001042529	exon7	c.1303-1G>T	.	TCCCCAGAAGCAG	.	219.0	45.0	307.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
AOC2	314	hgsc.bcm.edu	hg19	17	40997487	40997487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	AOC2	NM_009590	exon1	c.G844C	p.V282L	TTGGAAGTGGTTA	.	102.0	23.0	116.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	hg19	17	44101444	44101444	+	Silent	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MAPT	NM_001123066	exon15	c.C2238G	p.V746V	CAATGTCTCCTCC	.	155.0	10.0	186.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
NDC80	10403	hgsc.bcm.edu	hg19	18	2616466	2616466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NDC80	NM_006101	exon17	c.G1822C	p.D608H	AAAGTTGATAGAG	.	60.0	17.0	58.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
NDC80	10403	hgsc.bcm.edu	hg19	18	2616517	2616517	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NDC80	NM_006101	exon17	c.G1873C	p.E625Q	ATTAAAGAGATTA	.	37.0	10.0	38.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187475	12187475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	ZNF844,NS,carcinoma,0,6	ZNF844	NM_001136501	exon4	c.C1540G	p.H514D	CCTTCACATCTGC	.	43.0	4.0	51.0	1.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
FBXW9	84261	hgsc.bcm.edu	hg19	19	12800616	12800616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FBXW9	NM_032301	exon7	c.C1105T	p.H369Y	AGACGTGCAGCAG	.	98.0	22.0	180.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	hg19	20	1615980	1615980	+	Silent	SNP	C	C	A	rs147655438	alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	SIRPG,NS,carcinoma,0,1	SIRPG	NM_018556	exon4	c.G1014T	p.A338A	GCTGACCGCCAGC	.	90.0	24.0	131.0	0.0	.	61	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
FTCD	10841	hgsc.bcm.edu	hg19	21	47571511	47571511	+	Silent	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FTCD	NM_206965	exon5	c.C597A	p.I199I	GAGCGCGATGCGG	.	97.0	27.0	157.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
MSN	4478	hgsc.bcm.edu	hg19	X	64936758	64936758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSN	NM_002444	exon2	c.G91C	p.D31H	CTATTTGACCAGG	.	77.0	13.0	105.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
OGT	8473	hgsc.bcm.edu	hg19	X	70782731	70782731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	OGT	NM_181672	exon16	c.C2012T	p.A671V	GTGGTGCGCTTTT	.	132.0	31.0	123.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123197834	123197834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	STAG2	NM_001042749	exon20	c.C1958A	p.S653X	ATATTTCAAGAAG	.	61.0	15.0	55.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
LYPD3	27076	hgsc.bcm.edu	hg19	19	43967294	43967300	+	Frame_Shift_Del	DEL	GTTGCCG	GTTGCCG	-	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GTTGCCG	GTTGCCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LYPD3	NM_014400	exon4	c.523_529del	p.175_177del	.	.	98.0	20.0	171.0	0.0	.	24	.	0.204082	0	none	.	.	PASS	Atlas-INDEL
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37730588	37730589	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	RAB11FIP1	NM_001002814	exon4	c.1732_1733insC	p.S578fs	.	.	77.0	26.0	115.0	0.0	.	105	.	0.337662	0	none	.	.	PASS	Atlas-INDEL
