Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM200B	399474	hgsc.bcm.edu	hg19	1	29447533	29447533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TMEM200B	NM_001171868	exon2	c.C808T	p.L270F	CCCCAAGGAGGAG	.	34.0	14.0	72.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94548962	94548962	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ABCA4	NM_000350	exon7	c.C804T	p.I268I	CAGATTGATACCT	.	257.0	119.0	393.0	1.0	.	275	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114402065	114402065	+	Silent	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTPN22	NM_015967	exon2	c.T105C	p.S35S	CTTGGTAGATTGC	.	97.0	46.0	151.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
ADCK3	56997	hgsc.bcm.edu	hg19	1	227174187	227174187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ADCK3	NM_020247	exon15	c.A1693G	p.I565V	ATCCTCATCCTGG	.	97.0	45.0	134.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233134020	233134020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCNXL2	NM_014801	exon32	c.C5768T	p.S1923F	TCACAGGATGACA	.	18.0	9.0	28.0	0.0	.	204	.	.	.	none	.	.	PASS	Atlas-SNP
GCFC2	6936	hgsc.bcm.edu	hg19	2	75929399	75929399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001201335	exon3	c.C545A	p.P182H	TCATCAGGCTCAC	.	135.0	59.0	202.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	hg19	2	102792833	102792833	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	IL1R1,NS,malignant_melanoma,0,2	IL1R1	NM_000877	exon11	c.G1324C	p.E442Q	ATTAATGAAAACG	.	36.0	2.0	52.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166210795	166210795	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SCN2A	NM_001040143	exon16	c.A3013C	p.I1005L	CTCCAGATTGCTG	.	154.0	66.0	219.0	0.0	.	589	.	.	.	none	.	.	PASS	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178936278	178936278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	PDE11A,NS,carcinoma,0,1	PDE11A	NM_016953	exon1	c.C887A	p.T296K	TTGACCGTTTCTC	.	100.0	52.0	169.0	0.0	.	283	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	hg19	3	197427622	197427622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KIAA0226	NM_014687	exon7	c.G1123C	p.G375R	CCCCACCTCCTTC	.	36.0	11.0	76.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	hg19	5	140798373	140798373	+	Missense_Mutation	SNP	C	C	G	rs200530054	bycluster;by1000genomes;alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCDHGB7	NM_018927	exon1	c.C947G	p.T316R	GATATACGATAAA	.	24.0	4.0	27.0	0.0	.	117	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	hg19	5	149006787	149006787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ARHGEF37	NM_001001669	exon11	c.A1613G	p.N538S	TTCAAAACAAGGA	.	116.0	43.0	251.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS16	10279	hgsc.bcm.edu	hg19	6	27222771	27222771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRSS16	NM_005865	exon11	c.C1337T	p.T446I	GGGACACAGACCC	.	184.0	83.0	266.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA1L	3305	hgsc.bcm.edu	hg19	6	31779708	31779708	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HSPA1L	NM_005527	exon2	c.C42T	p.G14G	GGTGGTGCCCAGG	.	36.0	16.0	85.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A5	375611	hgsc.bcm.edu	hg19	7	103029857	103029857	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC26A5	NM_206883	exon13	c.C1326T	p.A442A	CACAATGGCCGAC	.	78.0	30.0	78.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
MAPK15	225689	hgsc.bcm.edu	hg19	8	144801161	144801161	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MAPK15	NM_139021	exon6	c.418-2A>T	.	CTCTGCAGCCGTC	.	12.0	7.0	26.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SLC1A1	6505	hgsc.bcm.edu	hg19	9	4585458	4585458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC1A1	NM_004170	exon12	c.T1475C	p.L492P	CAATCCTTGACAA	.	56.0	27.0	84.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
APTX	54840	hgsc.bcm.edu	hg19	9	32988092	32988092	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	APTX	NM_001195252	exon3	c.A211T	p.K71X	TTACCTTGACATA	.	76.0	25.0	132.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	hg19	9	98268787	98268787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTCH1	NM_000264	exon2	c.G296A	p.G99D	AACTTGCCGCAGT	.	36.0	17.0	77.0	0.0	.	1850	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYND11	10771	hgsc.bcm.edu	hg19	10	287963	287963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZMYND11	NM_006624	exon10	c.A834G	p.I278M	CCAGATACCTAAT	.	46.0	17.0	76.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103900396	103900396	+	Missense_Mutation	SNP	G	G	A	rs17847386	bycluster	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	PPRC1,colon,carcinoma,0,1	PPRC1	NM_015062	exon5	c.G2131A	p.V711M	CTCCTCGTGGAGT	.	64.0	6.0	101.0	0.0	.	151	.	.	.	weak	G|0.999;T|0.001	.	PASS	Atlas-SNP
SLC43A3	29015	hgsc.bcm.edu	hg19	11	57177469	57177469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC43A3	NM_017611	exon12	c.A1186C	p.I396L	GCAGGATGAAGGT	.	24.0	7.0	47.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
USP28	57646	hgsc.bcm.edu	hg19	11	113705056	113705056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	USP28	NM_020886	exon6	c.C536G	p.S179C	AAGAGAGACTGAA	.	34.0	18.0	47.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
DPAGT1	1798	hgsc.bcm.edu	hg19	11	118969112	118969112	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	DPAGT1,NS,malignant_melanoma,0,1	DPAGT1	NM_001382	exon6	c.728+1G>A	.	TACTTACCAGTTG	.	101.0	50.0	175.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51495806	51495806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TFCP2	NM_001173452	exon11	c.G1063A	p.A355T	AATCTGCCCCTGG	.	65.0	15.0	93.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SLC39A5	283375	hgsc.bcm.edu	hg19	12	56626598	56626598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC39A5	NM_173596	exon5	c.A413G	p.D138G	GCCTGGACCTCCT	.	83.0	32.0	86.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57864354	57864354	+	Missense_Mutation	SNP	C	C	T	rs368078339		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GLI1	NM_005269	exon12	c.C1831T	p.R611W	CTGGATCGGATAG	.	57.0	21.0	77.0	0.0	.	141	.	.	.	weak	.	.	PASS	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41894809	41894809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NAA16	NM_001110798	exon4	c.A251T	p.H84L	GTTGGCATGTATA	.	58.0	4.0	72.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	hg19	14	47351354	47351354	+	Missense_Mutation	SNP	G	G	T	rs369029916	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MDGA2	NM_001113498	exon11	c.C2309A	p.T770K	TTATATGTAATTA	.	29.0	7.0	25.0	0.0	.	470	.	.	.	alt	.	.	PASS	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	hg19	14	90528673	90528673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KCNK13	NM_022054	exon1	c.G124A	p.E42K	GCGCTGGAGCTGG	.	7.0	4.0	12.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
RRN3	54700	hgsc.bcm.edu	hg19	16	15159184	15159184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	RRN3	NM_018427	exon16	c.A1598G	p.N533S	TGGCGATTGTTCC	.	77.0	13.0	105.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	hg19	16	68909060	68909060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_024562	exon5	c.G998T	p.G333V	CAGCGGGAGCAGC	.	37.0	17.0	97.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2601454	2601454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_015229	exon10	c.T1583C	p.L528P	ATCTTGAGGGGCC	.	9.0	7.0	9.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11772554	11772554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DNAH9	NM_001372	exon51	c.C10037T	p.S3346F	CCATCTCCCTTGC	.	91.0	28.0	118.0	0.0	.	695	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF207	7756	hgsc.bcm.edu	hg19	17	30692444	30692444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF207	NM_001098507	exon8	c.A766G	p.T256A	GCACCAACAGCAA	.	82.0	4.0	62.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305911	39305911	+	Missense_Mutation	SNP	G	G	A	rs141058010	bycluster	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	KRTAP4-5,NS,carcinoma,0,1	KRTAP4-5	NM_033188	exon1	c.C109T	p.R37C	TGGGGCGGCAGCA	.	78.0	7.0	86.0	1.0	.	34	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC16A5	9121	hgsc.bcm.edu	hg19	17	73096278	73096278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC16A5	NM_001271765	exon5	c.G520T	p.V174F	TTCCTTGTCTTCG	.	49.0	4.0	77.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	hg19	19	11978986	11978986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF439	NM_152262	exon3	c.T1102C	p.S368P	GCCAAGTCATTTC	.	60.0	4.0	109.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	hg19	19	47987312	47987312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KPTN	NM_007059	exon1	c.G106A	p.G36S	GCCCGCCGGCGCC	.	43.0	17.0	64.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MKKS	8195	hgsc.bcm.edu	hg19	20	10385928	10385928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MKKS	NM_170784	exon6	c.G1680T	p.L560F	AAGATCCAAAATC	.	32.0	9.0	44.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
GYG2	8908	hgsc.bcm.edu	hg19	X	2772026	2772026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GYG2	NM_003918	exon5	c.T248A	p.I83N	GGGTCATCCTCTC	.	47.0	43.0	47.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71829514	71829514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PHKA1	NM_002637	exon23	c.G2566A	p.V856I	GTCCTACTGTCAA	.	53.0	47.0	80.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
NCAPH	23397	hgsc.bcm.edu	hg19	2	97017659	97017669	+	Frame_Shift_Del	DEL	AGAAGTGAACT	AGAAGTGAACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	AGAAGTGAACT	AGAAGTGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NCAPH	NM_015341	exon7	c.810_820del	p.270_274del	.	.	55.0	17.0	112.0	0.0	.	67	.	0.309091	0	none	.	.	PASS	Atlas-INDEL
TRIO	7204	hgsc.bcm.edu	hg19	5	14387672	14387672	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TRIO	NM_007118	exon22	c.3695delC	p.S1232fs	.	.	94.0	38.0	193.0	0.0	.	305	.	0.404255	0	none	.	.	PASS	Atlas-INDEL
CRNN	49860	hgsc.bcm.edu	hg19	1	152382377	152382391	+	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CRNN	NM_016190	exon3	c.1168_1182del	p.390_394del	.	.	73.0	23.0	149.0	0.0	.	78	.	0.315068	0	none	.	.	PASS	Atlas-INDEL
ZNF226	7769	hgsc.bcm.edu	hg19	19	44680650	44680650	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001032372	exon6	c.1234delG	p.V412fs	.	.	46.0	19.0	68.0	0.0	.	.	.	0.413043	0	none	.	.	PASS	Atlas-INDEL
SYP	6855	hgsc.bcm.edu	hg19	X	49050637	49050638	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP	NM_003179	exon4	c.409_410del	p.137_137del	.	.	27.0	20.0	51.0	0.0	.	71	.	0.740741	0	none	.	.	PASS	Atlas-INDEL
