Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZNF644	84146	hgsc.bcm.edu	hg19	1	91406116	91406116	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF644	NM_201269	exon3	c.C795T	p.F265F	TTGAATGAACTCT	.	144.0	57.0	102.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
KCND3	3752	hgsc.bcm.edu	hg19	1	112524716	112524716	+	Silent	SNP	C	C	T	rs35131566	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KCND3	NM_004980	exon2	c.G633A	p.P211P	GCTGCCCGGGACC	.	34.0	13.0	60.0	0.0	.	150	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	hg19	1	155638446	155638446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	YY1AP1	NM_001198903	exon8	c.T1265A	p.M422K	CTGTTCATGTTGA	.	149.0	46.0	197.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21251317	21251317	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	APOB	NM_000384	exon13	c.C1711T	p.Q571X	CTGCCTGTGAAGG	.	144.0	55.0	179.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	hg19	2	173352903	173352903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ITGA6	NM_000210	exon19	c.C2452A	p.Q818K	GGCGAGCAAGCTA	.	115.0	46.0	159.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
NEK10	152110	hgsc.bcm.edu	hg19	3	27297798	27297798	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEK10	NM_199347	exon24	c.C2079T	p.I693I	ATACAGGATTGTT	.	27.0	9.0	39.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL40	131377	hgsc.bcm.edu	hg19	3	42727131	42727131	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_152393	exon1	c.G21A	p.Q7Q	GGAGCAGGCGGAG	.	16.0	8.0	22.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	hg19	4	89410409	89410409	+	Silent	SNP	C	C	G	rs141289100	bycluster;byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HERC5	NM_016323	exon16	c.C2055G	p.V685V	AACAGTCAGAAGG	.	220.0	98.0	259.0	0.0	.	114	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126411930	126411930	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FAT4	NM_024582	exon17	c.C13953A	p.I4651I	TTCAATCCAGAGG	.	73.0	32.0	85.0	0.0	.	1752	.	.	.	none	.	.	PASS	Atlas-SNP
NSUN2	54888	hgsc.bcm.edu	hg19	5	6620336	6620336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NSUN2	NM_017755	exon7	c.G698A	p.S233N	CAGGGGCTGCTCA	.	144.0	9.0	151.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
FCHO2	115548	hgsc.bcm.edu	hg19	5	72378596	72378596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FCHO2	NM_138782	exon24	c.A2189C	p.E730A	ATGCAGAACAAAT	.	14.0	9.0	25.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127419881	127419881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC12A2	NM_001046	exon1	c.A235C	p.S79R	AGCCAGAGCCGTT	.	7.0	5.0	8.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	hg19	5	149644564	149644564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAMK2A	NM_171825	exon3	c.G172C	p.E58Q	CACGCTCCAGCTT	.	68.0	20.0	98.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17796913	17796913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIF13A	NM_001105567	exon23	c.A2929C	p.T977P	GCAGTGTTCTTGT	.	175.0	75.0	248.0	0.0	.	276	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56463337	56463337	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DST	NM_015548	exon27	c.A3996G	p.A1332A	CTGTTCTGCTTTT	.	34.0	13.0	28.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	hg19	7	66514966	66514966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TYW1	NM_018264	exon8	c.G1015T	p.G339C	AAGTCTGGTTTGT	.	92.0	18.0	70.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423433	116423433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MET	NM_001127500	exon19	c.T3762A	p.S1254R	CTATAGTGTACAC	.	105.0	62.0	74.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
SPAM1	6677	hgsc.bcm.edu	hg19	7	123599995	123599995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SPAM1	NM_153189	exon5	c.T1502A	p.L501H	TGTTTCTTATCAT	.	97.0	54.0	50.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110420393	110420393	+	Silent	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PKHD1L1	NM_177531	exon18	c.G1929C	p.G643G	GGATGGGATCGCT	.	58.0	12.0	60.0	0.0	.	522	.	.	.	none	.	.	PASS	Atlas-SNP
VPS28	51160	hgsc.bcm.edu	hg19	8	145651588	145651588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS28	NM_016208	exon3	c.C41A	p.P14H	TTCCCAGGGGCTG	.	13.0	8.0	27.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20990148	20990148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_017794	exon44	c.T5031A	p.F1677L	GATATTTGCAACC	.	89.0	39.0	93.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	hg19	9	72913102	72913102	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SMC5	NM_015110	exon9	c.G1274C	p.R425P	ATAAGCGAAGAGA	.	89.0	31.0	81.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79981712	79981712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS13A	NM_001018038	exon61	c.A8395C	p.I2799L	GGACTGATTCCAG	.	42.0	20.0	39.0	0.0	.	735	.	.	.	none	.	.	PASS	Atlas-SNP
PDCL	5082	hgsc.bcm.edu	hg19	9	125582792	125582792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PDCL	NM_005388	exon4	c.C478T	p.Q160X	AAACCTGCTTGAA	.	162.0	56.0	232.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A8	29988	hgsc.bcm.edu	hg19	9	130167105	130167105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC2A8	NM_014580	exon8	c.A985G	p.M329V	GTGGTCATGGTGT	.	64.0	14.0	98.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63852307	63852307	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	ARID5B,colon,carcinoma,0,1	ARID5B	NM_032199	exon10	c.C3085A	p.R1029R	AAGGCCCGGGCAG	.	131.0	44.0	184.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB12	54788	hgsc.bcm.edu	hg19	10	74095536	74095536	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DNAJB12	NM_017626	exon9	c.1260+2T>A	.	GCTCATACTTGGA	.	55.0	22.0	76.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48181586	48181586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PTPRJ	NM_002843	exon22	c.T3543A	p.D1181E	CAGAGATTTCACA	.	145.0	56.0	160.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN1	823	hgsc.bcm.edu	hg19	11	64974118	64974118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAPN1	NM_001198869	exon13	c.T1538G	p.F513C	TGCGCTTCTTCTC	.	53.0	12.0	57.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RNF26	79102	hgsc.bcm.edu	hg19	11	119206410	119206410	+	Missense_Mutation	SNP	G	G	A	rs200033048	bycluster	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	RNF26	NM_032015	exon1	c.G578A	p.S193N	TTTCCAGCAGTGC	.	69.0	28.0	72.0	0.0	.	23	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
H2AFJ	55766	hgsc.bcm.edu	hg19	12	14927594	14927594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	H2AFJ	NM_177925	exon1	c.C190G	p.L64V	GAGATCCTGGAGC	.	105.0	36.0	139.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
CPM	1368	hgsc.bcm.edu	hg19	12	69326479	69326479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CPM	NM_001005502	exon2	c.A139T	p.S47C	CAATACTGTGTAA	.	104.0	53.0	108.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
DUSP6	1848	hgsc.bcm.edu	hg19	12	89744677	89744677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DUSP6	NM_001946	exon2	c.T526C	p.S176P	AGGAAGAGTCAGA	.	63.0	28.0	72.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ABCD4	5826	hgsc.bcm.edu	hg19	14	74756774	74756774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ABCD4	NM_005050	exon13	c.C1375A	p.L459M	GTGGCAGGAATAG	.	105.0	36.0	147.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	hg19	15	56208934	56208934	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEDD4	NM_198400	exon1	c.C96T	p.H32H	GCACATGTGAACA	.	162.0	7.0	231.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
PPIB	5479	hgsc.bcm.edu	hg19	15	64454355	64454355	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PPIB	NM_000942	exon3	c.136-2A>G	.	TACACCTGAGGAA	.	187.0	80.0	220.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
GPR97	222487	hgsc.bcm.edu	hg19	16	57719830	57719830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR97	NM_170776	exon11	c.C1532T	p.S511F	TCAACTCCTTGCA	.	120.0	52.0	187.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
KIFC3	3801	hgsc.bcm.edu	hg19	16	57806198	57806198	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIFC3	NM_001130100	exon4	c.A318G	p.V106V	GTGTTCTACCTGT	.	79.0	31.0	99.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1370772	1370772	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MYO1C	NM_033375	exon31	c.2960+2T>G	.	CGCCTCACCTGCC	.	82.0	36.0	81.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48818486	48818486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	LUC7L3	NM_006107	exon4	c.T230C	p.M77T	GTTTCATGAAAGT	.	310.0	87.0	306.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57724783	57724783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CLTC	NM_004859	exon3	c.A275T	p.N92I	TTTTTAACATTGA	.	91.0	28.0	87.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9064319	9064319	+	Silent	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MUC16	NM_024690	exon3	c.T23127C	p.H7709H	GGGGATATGTGCT	.	92.0	4.0	115.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
TBCB	1155	hgsc.bcm.edu	hg19	19	36606528	36606528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TBCB	NM_001281	exon1	c.C66G	p.F22L	CACCTTCCGCTCC	.	28.0	10.0	43.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42795453	42795453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CIC	NM_015125	exon10	c.G2533A	p.A845T	GCACCAGCCCCTG	.	45.0	19.0	64.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
TUBB1	81027	hgsc.bcm.edu	hg19	20	57597910	57597910	+	Missense_Mutation	SNP	T	T	C	rs374942824		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TUBB1	NM_030773	exon2	c.T68C	p.M23T	GGGAGATGATTGG	.	88.0	51.0	82.0	0.0	.	42	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	hg19	21	43963563	43963563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC37A1	NM_018964	exon9	c.G581A	p.G194E	TTATGGGGGTCTG	.	243.0	75.0	320.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
CORO1A	11151	hgsc.bcm.edu	hg19	16	30198546	30198547	+	Splice_Site	INS	-	-	GA	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CORO1A	NM_007074	exon5	c.636+2->GA	.	.	.	74.0	21.0	102.0	0.0	.	36	.	0.283784	0	none	.	.	PASS	Atlas-INDEL
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180310448	180310448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF385B	NM_152520	exon8	c.925delC	p.H309fs	.	.	91.0	30.0	81.0	0.0	.	68	.	0.32967	0	none	.	.	PASS	Atlas-INDEL
NEDD4	4734	hgsc.bcm.edu	hg19	15	56208931	56208934	+	Frame_Shift_Del	DEL	CATG	CATG	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEDD4	NM_198400	exon1	c.97_100del	p.33_34del	.	.	214.0	67.0	225.0	0.0	.	167	.	0.313084	0	none	.	.	PASS	Atlas-INDEL
SON	6651	hgsc.bcm.edu	hg19	21	34927198	34927198	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SON	NM_032195	exon3	c.5660delC	p.S1887X	.	.	42.0	15.0	38.0	0.0	.	343	.	0.357143	0	none	.	.	PASS	Atlas-INDEL
GPR174	84636	hgsc.bcm.edu	hg19	X	78427128	78427128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR174	NM_032553	exon1	c.623delC	p.T208fs	.	.	151.0	60.0	101.0	0.0	.	79	.	0.397351	0	none	.	.	PASS	Atlas-INDEL
