Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RERE	473	hgsc.bcm.edu	hg19	1	8674682	8674682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RERE	NM_012102	exon5	c.T460A	p.S154T	GCAGAGAGCATGC	.	183.0	57.0	217.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
TNFRSF1B	7133	hgsc.bcm.edu	hg19	1	12266986	12266986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TNFRSF1B	NM_001066	exon10	c.C1295T	p.S432L	TTCGGTCACAGCT	.	116.0	34.0	137.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
AGMAT	79814	hgsc.bcm.edu	hg19	1	15909721	15909721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	AGMAT	NM_024758	exon2	c.A442T	p.I148F	CTACAATTTTCTC	.	59.0	24.0	74.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A9	200010	hgsc.bcm.edu	hg19	1	48713171	48713171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC5A9	NM_001135181	exon15	c.C2077T	p.L693F	GCTGTCCTTTTGC	.	131.0	36.0	143.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53287171	53287171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZYG11B	NM_024646	exon14	c.A2105G	p.K702R	ACATCAAAGATCA	.	84.0	18.0	83.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55612677	55612677	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	USP24	NM_015306	exon19	c.T2175C	p.Y725Y	GCCCAGATACAGA	.	54.0	20.0	55.0	0.0	.	323	.	.	.	none	.	.	PASS	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62365295	62365295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	INADL	NM_176877	exon23	c.C3172T	p.P1058S	GAAACTCCAAATT	.	256.0	78.0	263.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152082279	152082279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TCHH	NM_007113	exon3	c.G3414A	p.R1138R	ATATTGCCTCTCC	.	139.0	39.0	175.0	0.0	.	275	.	.	.	none	.	.	PASS	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154841688	154841688	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNN3	NM_001204087	exon1	c.C753T	p.S251S	GGTGCTGCTGGCG	.	113.0	41.0	161.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
EFNA1	1942	hgsc.bcm.edu	hg19	1	155104075	155104075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	EFNA1	NM_182685	exon2	c.A353G	p.K118R	TGGGCAAGGAGTT	.	47.0	10.0	65.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44139638	44139638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	LRPPRC	NM_133259	exon30	c.T3208C	p.Y1070H	TGCTGTAGGTTTC	.	86.0	33.0	58.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
MTHFD2	10797	hgsc.bcm.edu	hg19	2	74441208	74441208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MTHFD2	NM_006636	exon8	c.G892A	p.V298I	GTAGGAGTCAGAC	.	244.0	71.0	274.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102849533	102849533	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RL2	NM_003854	exon10	c.C1246T	p.Q416X	GAGAGACAATGTG	.	128.0	38.0	127.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
IL1RN	3557	hgsc.bcm.edu	hg19	2	113885204	113885204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RN	NM_173842	exon1	c.G3A	p.M1I	CAGAATGGAAATC	.	56.0	13.0	60.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD14	10213	hgsc.bcm.edu	hg19	2	162227815	162227815	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMD14	NM_005805	exon7	c.T444C	p.I148I	TCCCATTCAGAGT	.	20.0	4.0	25.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204039877	204039877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NBEAL1	NM_001114132	exon41	c.A6244T	p.N2082Y	TATGAAAATTTTG	.	83.0	27.0	93.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233660917	233660917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.,2	GIGYF2	NM_001103147	exon16	c.A1688G	p.Q563R	ATCCTCAGGGAGA	.	136.0	33.0	117.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	hg19	3	46307340	46307340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCR3	NM_178328	exon3	c.A754G	p.S252G	TGCCCCAGTAAAA	.	62.0	28.0	101.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
GNAI2	2771	hgsc.bcm.edu	hg19	3	50294280	50294280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GNAI2	NM_002070	exon6	c.A719C	p.E240A	ACGAGGAGATGGT	.	87.0	35.0	105.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	KIAA2018,rectum,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	46.0	7.0	42.0	2.0	.	180	.	.	.	weak	.	.	PASS	Atlas-SNP
ZXDC	79364	hgsc.bcm.edu	hg19	3	126194470	126194470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZXDC	NM_025112	exon1	c.A239G	p.E80G	GGCACTTCCAGCA	.	18.0	11.0	40.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf36	132989	hgsc.bcm.edu	hg19	4	87809274	87809274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C4orf36	NM_144645	exon3	c.T220A	p.S74T	ACTTACATTCTGC	.	89.0	25.0	101.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	hg19	4	128812805	128812805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PLK4	NM_014264	exon9	c.C2007A	p.N669K	TGACAACATCAGT	.	176.0	59.0	162.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	hg19	4	153896859	153896859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FHDC1	NM_033393	exon11	c.G2416A	p.G806S	GGGGATGGCTCCA	.	139.0	52.0	151.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1074691	1074691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC12A7	NM_006598	exon16	c.A2063C	p.K688T	CAGTTCTTGGTGT	.	100.0	31.0	103.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176831350	176831350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	F12	NM_000505	exon9	c.T865C	p.Y289H	CGCAGTACTCCCA	.	36.0	15.0	33.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31927082	31927082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SKIV2L	NM_006929	exon2	c.C31A	p.P11T	CTACCCCCTCCAG	.	457.0	133.0	587.0	1.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51930865	51930865	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKHD1	NM_170724	exon12	c.T789C	p.S263S	AAACACAGATAAT	.	53.0	15.0	66.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111555869	111555869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DOCK4	NM_014705	exon13	c.C1157T	p.T386I	TTCCTTGTTATGG	.	48.0	13.0	35.0	0.0	.	365	.	.	.	none	.	.	PASS	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28991695	28991695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIF13B	NM_015254	exon22	c.G2646C	p.Q882H	CAGATGCTGTGGC	.	122.0	45.0	119.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
C8orf46	254778	hgsc.bcm.edu	hg19	8	67405943	67405943	+	Silent	SNP	T	T	A	rs139160272	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C8orf46	NM_152765	exon1	c.T60A	p.I20I	CGTGATTCCTTCC	.	76.0	22.0	71.0	0.0	.	22	.	.	.	alt	T|0.999;C|0.001	.	PASS	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718279	2718279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNV2	NM_133497	exon1	c.C540T	p.R180R	GCGCCGCTTCCTG	.	17.0	6.0	34.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35699405	35699405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TLN1	NM_006289	exon51	c.G6822T	p.K2274N	CACACGCTTTGAA	.	99.0	32.0	97.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127572163	127572163	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OLFML2A	NM_182487	exon8	c.C1431T	p.Y477Y	CTTCTACTACAAC	.	96.0	32.0	114.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
CCBL1	883	hgsc.bcm.edu	hg19	9	131607633	131607633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCBL1	NM_001122672	exon2	c.T52A	p.W18R	CTCACCAGGGGTT	.	48.0	8.0	88.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PTCHD3	374308	hgsc.bcm.edu	hg19	10	27687708	27687708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTCHD3	NM_001034842	exon4	c.T1819C	p.F607L	ATATAAAGACTAC	.	95.0	63.0	92.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	hg19	10	51585156	51585156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NCOA4	NM_001145261	exon9	c.G1303T	p.D435Y	GTGTGTGATGAGA	.	104.0	69.0	99.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88259986	88259986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WAPAL	NM_015045	exon3	c.G1014T	p.K338N	CCCTTTCTTTGCC	.	166.0	117.0	190.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PAPSS2	9060	hgsc.bcm.edu	hg19	10	89503313	89503313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PAPSS2	NM_001015880	exon11	c.C1406T	p.A469V	ACGCGGCTGTGCT	.	91.0	47.0	108.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
OR52K1	390036	hgsc.bcm.edu	hg19	11	4510932	4510932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OR52K1	NM_001005171	exon1	c.C802T	p.R268C	GTAGCCCGCCATG	.	230.0	66.0	300.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A45	283130	hgsc.bcm.edu	hg19	11	65144060	65144060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC25A45	NM_182556	exon7	c.A685G	p.M229V	TCTGCATCCGGGA	.	121.0	33.0	150.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
RELA	5970	hgsc.bcm.edu	hg19	11	65423175	65423175	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RELA	NM_021975	exon10	c.T1017C	p.A339A	GACAGAAGCTGAG	.	67.0	16.0	74.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ANO1	55107	hgsc.bcm.edu	hg19	11	69951883	69951883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	ANO1_ENST00000355303,colon,carcinoma,0,2	ANO1	NM_018043	exon5	c.C736T	p.R246W	AAAACCCGGAGCA	.	47.0	15.0	94.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110007683	110007683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZC3H12C	NM_033390	exon2	c.T317C	p.I106T	GTAGCATTTCAGT	.	27.0	15.0	33.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
DRD2	1813	hgsc.bcm.edu	hg19	11	113295344	113295344	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DRD2	NM_016574	exon2	c.T30C	p.D10D	ATCATCATCATAC	.	107.0	27.0	132.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PCED1B	91523	hgsc.bcm.edu	hg19	12	47628909	47628909	+	Silent	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_138371	exon2	c.G63T	p.L21L	CATCCTGGGGGAC	.	74.0	24.0	89.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM120B	144404	hgsc.bcm.edu	hg19	12	122190050	122190050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TMEM120B	NM_001080825	exon5	c.G382A	p.E128K	AAGGACGAATATG	.	120.0	40.0	129.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102500785	102500785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DYNC1H1	NM_001376	exon56	c.A10750G	p.N3584D	CGATTCAATAGGT	.	137.0	39.0	186.0	0.0	.	395	.	.	.	none	.	.	PASS	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88679229	88679229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	NTRK3_ENST00000360948,caecum,carcinoma,+2,1	NTRK3	NM_001243101	exon9	c.C808G	p.L270V	TCACCAGCGTCAA	.	136.0	42.0	164.0	0.0	.	587	.	.	.	none	.	.	PASS	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89398462	89398462	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ACAN	NM_001135	exon12	c.C2646T	p.F882F	TGACTTCAGTGGG	.	74.0	22.0	101.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
RHCG	51458	hgsc.bcm.edu	hg19	15	90026327	90026327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RHCG	NM_016321	exon3	c.A493G	p.N165D	ACTCATTCACAGC	.	78.0	29.0	67.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	hg19	16	1398016	1398016	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3	NM_003933	exon32	c.C3252G	p.Y1084X	CTTCTACTTGTGA	.	66.0	6.0	115.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS22	64063	hgsc.bcm.edu	hg19	16	2905588	2905588	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PRSS22	NM_022119	exon4	c.C546T	p.S182S	TTGGATGCTCCCC	.	121.0	63.0	111.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS22	64063	hgsc.bcm.edu	hg19	16	2905589	2905589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PRSS22	NM_022119	exon4	c.G545A	p.S182N	TGGATGCTCCCCC	.	121.0	62.0	113.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
PSMB10	5699	hgsc.bcm.edu	hg19	16	67970649	67970649	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMB10	NM_002801	exon1	c.C4G	p.L2V	GCTTCAGCATCTT	.	11.0	6.0	2.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27975326	27975326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SSH2	NM_033389	exon13	c.G1182T	p.M394I	CACCCCCATTTTG	.	85.0	46.0	60.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
WIPF2	147179	hgsc.bcm.edu	hg19	17	38416825	38416825	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WIPF2	NM_133264	exon3	c.G102A	p.Q34Q	TGAGCAGCGGGGT	.	161.0	38.0	158.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
GAREM	64762	hgsc.bcm.edu	hg19	18	29867256	29867256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_022751	exon4	c.T1304C	p.F435S	TCTGGGAAAAGGT	.	210.0	69.0	211.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF516	9658	hgsc.bcm.edu	hg19	18	74154041	74154041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF516	NM_014643	exon3	c.G970A	p.E324K	CCTCCTCCTGGAC	.	87.0	24.0	98.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	hg19	19	5208061	5208061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	PTPRS,colon,carcinoma,0,2	PTPRS	NM_002850	exon37	c.G5650T	p.V1884L	TGCCCACGCCGGC	.	38.0	2.0	32.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
CD209	30835	hgsc.bcm.edu	hg19	19	7810714	7810714	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CD209	NM_021155	exon4	c.C438T	p.I146I	CTGGTAGATCTCC	.	237.0	73.0	367.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15350519	15350519	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BRD4	NM_058243	exon16	c.G3396A	p.E1132E	GGGGGGCTCCGGC	.	69.0	27.0	88.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G1432C	p.E478Q	GTTTCTCTCCAGT	.	64.0	3.0	46.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40419757	40419757	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FCGBP	NM_003890	exon6	c.T3237C	p.H1079H	CTTGCTATGGCAC	.	162.0	44.0	181.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49658077	49658077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	HRC	NM_002152	exon1	c.G418C	p.E140Q	TGTCTTCACTCCC	.	113.0	34.0	152.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	hg19	19	53762787	53762787	+	Nonsense_Mutation	SNP	C	C	T	rs374706531		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	VN1R2,colon,carcinoma,-1,1	VN1R2	NM_173856	exon1	c.C1159T	p.R387X	AATAGACGATTCT	.	139.0	35.0	165.0	0.0	.	71	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC24A3	57419	hgsc.bcm.edu	hg19	20	19679325	19679325	+	Splice_Site	SNP	G	G	C	rs201062990	by1000genomes;alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC24A3	NM_020689	exon15	c.1719+1G>C	.	TCCTACGTAAGTG	.	19.0	9.0	14.0	0.0	.	92	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
MOCS3	27304	hgsc.bcm.edu	hg19	20	49576203	49576203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MOCS3	NM_014484	exon1	c.T824G	p.L275W	GCAGCTTGTTGCT	.	120.0	63.0	104.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ARVCF	421	hgsc.bcm.edu	hg19	22	19965495	19965495	+	Missense_Mutation	SNP	C	C	G	rs373958610	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ARVCF	NM_001670	exon8	c.G1684C	p.D562H	CAGTGTCCTTCCG	.	58.0	16.0	77.0	0.0	.	54	.	.	.	alt	.	.	PASS	Atlas-SNP
RGPD8	727851	hgsc.bcm.edu	hg19	2	113158709	113158709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RGPD8	NM_001164463	exon12	c.1744delT	p.Y582fs	.	.	379.0	26.0	360.0	0.0	.	81	.	0.0686016	0	none	.	.	PASS	Atlas-INDEL
ZNF200	7752	hgsc.bcm.edu	hg19	16	3274128	3274128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF200	NM_003454	exon5	c.953delG	p.R318fs	.	.	233.0	109.0	186.0	0.0	.	36	.	0.467811	0	none	.	.	PASS	Atlas-INDEL
RGPD5	84220	hgsc.bcm.edu	hg19	2	110582512	110582512	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RGPD5	NM_032260	exon13	c.1739delC	p.A580fs	.	.	362.0	26.0	396.0	0.0	.	1	.	0.0718232	0	none	.	.	PASS	Atlas-INDEL
RGPD5	84220	hgsc.bcm.edu	hg19	2	111304146	111304146	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RGPD5	NM_032260	exon13	c.1744delT	p.Y582fs	.	.	376.0	27.0	366.0	0.0	.	1	.	0.0718085	0	none	.	.	PASS	Atlas-INDEL
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	141449171	141449172	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAPPC9	NM_031466	exon3	c.1004_1005del	p.335_335del	.	.	160.0	72.0	174.0	0.0	.	114	.	0.45	0	none	.	.	PASS	Atlas-INDEL
COL5A2	1290	hgsc.bcm.edu	hg19	2	189898818	189898819	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	COL5A2	NM_000393	exon54	c.4478_4479insAA	p.I1493fs	.	.	68.0	15.0	66.0	0.0	.	230	.	0.220588	0	none	.	.	PASS	Atlas-INDEL
CLTB	1212	hgsc.bcm.edu	hg19	5	175843340	175843342	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CLTB	NM_007097	exon1	c.24_26del	p.8_9del	.	.	36.0	15.0	71.0	0.0	.	17	.	0.416667	0	none	.	.	PASS	Atlas-INDEL
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46655720	46655720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKDREJ	NM_006071	exon1	c.3501delT	p.P1167fs	.	.	205.0	50.0	208.0	0.0	.	195	.	0.243902	0	none	.	.	PASS	Atlas-INDEL
MPP6	51678	hgsc.bcm.edu	hg19	7	24727063	24727075	+	Frame_Shift_Del	DEL	GACTTGAAGAAAA	GACTTGAAGAAAA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GACTTGAAGAAAA	GACTTGAAGAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MPP6	NM_016447	exon13	c.1452_1464del	p.484_488del	.	.	142.0	50.0	130.0	0.0	.	62	.	0.352113	0	none	.	.	PASS	Atlas-INDEL
MAT2B	27430	hgsc.bcm.edu	hg19	5	162940576	162940577	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MAT2B	NM_013283	exon3	c.274_275insA	p.H92fs	.	.	104.0	37.0	155.0	0.0	.	42	.	0.355769	0	none	.	.	PASS	Atlas-INDEL
ANKZF1	55139	hgsc.bcm.edu	hg19	2	220099806	220099806	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ANKZF1	NM_018089	exon10	c.1462delG	p.A488fs	.	.	70.0	20.0	83.0	0.0	.	45	.	0.285714	0	none	.	.	PASS	Atlas-INDEL
DENND5A	23258	hgsc.bcm.edu	hg19	11	9173965	9173965	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DENND5A	NM_001243254	exon13	c.2462delT	p.L821fs	.	.	188.0	58.0	169.0	0.0	.	84	.	0.308511	0	none	.	.	PASS	Atlas-INDEL
RLIM	51132	hgsc.bcm.edu	hg19	X	73815805	73815805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RLIM	NM_183353	exon3	c.9delC	p.N3fs	.	.	69.0	31.0	87.0	0.0	.	90	.	0.449275	0	none	.	.	PASS	Atlas-INDEL
BAIAP3	8938	hgsc.bcm.edu	hg19	16	1398015	1398021	+	Frame_Shift_Del	DEL	ACTTGTG	ACTTGTG	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	ACTTGTG	ACTTGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3	NM_003933	exon32	c.3250_3254del	p.1084_1085del	.	.	115.0	43.0	120.0	0.0	.	88	.	0.373913	0	none	.	.	PASS	Atlas-INDEL
ABCC2	1244	hgsc.bcm.edu	hg19	10	101606844	101606844	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ABCC2	NM_000392	exon30	c.4272delT	p.L1424fs	.	.	150.0	101.0	197.0	0.0	.	160	.	0.673333	0	none	.	.	PASS	Atlas-INDEL
PTEN	5728	hgsc.bcm.edu	hg19	10	89717645	89717646	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTEN	NM_000314	exon7	c.669_670del	p.223_224del	.	.	150.0	84.0	162.0	0.0	.	3652	.	0.56	0	none	.	.	PASS	Atlas-INDEL
FAM72A	729533	hgsc.bcm.edu	hg19	1	206139310	206139310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FAM72A	NM_001123168	exon1	c.5delC	p.S2fs	.	.	359.0	47.0	401.0	0.0	.	9	.	0.130919	0	none	.	.	PASS	Atlas-INDEL
MMP21	118856	hgsc.bcm.edu	hg19	10	127455343	127455343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MMP21	NM_147191	exon7	c.1599delG	p.K533fs	.	.	119.0	63.0	138.0	0.0	.	46	.	0.529412	0	none	.	.	PASS	Atlas-INDEL
ZMIZ2	83637	hgsc.bcm.edu	hg19	7	44807159	44807159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZMIZ2	NM_031449	exon19	c.2699delT	p.L900fs	.	.	122.0	24.0	118.0	0.0	.	82	.	0.196721	0	none	.	.	PASS	Atlas-INDEL
TRAF4	9618	hgsc.bcm.edu	hg19	17	27074242	27074243	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAF4	NM_004295	exon2	c.155_156insC	p.F52fs	.	.	158.0	82.0	184.0	0.0	.	20	.	0.518987	0	none	.	.	PASS	Atlas-INDEL
