Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRAMEF12	390999	hgsc.bcm.edu	hg19	1	12835789	12835789	+	Nonsense_Mutation	SNP	C	C	T	rs201386508	bycluster;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRAMEF12	NM_001080830	exon2	c.C391T	p.R131X	AAGAGACGAACAG	.	126.0	49.0	137.0	0.0	.	69	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
MYCL1	4610	hgsc.bcm.edu	hg19	1	40366677	40366677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MYCL1	NM_005376	exon2	c.G520A	p.A174T	AGGGGGCGGCGGG	.	7.0	4.0	1.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
FOXD2	2306	hgsc.bcm.edu	hg19	1	47905224	47905224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	FOXD2,caecum,carcinoma,0,1	FOXD2	NM_004474	exon1	c.G1417A	p.G473R	CATCCCGGGGACG	.	34.0	21.0	11.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PRDX6	9588	hgsc.bcm.edu	hg19	1	173454563	173454563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRDX6	NM_004905	exon3	c.A316G	p.R106G	GATGATAGGAATC	.	109.0	44.0	132.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232600607	232600607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SIPA1L2	NM_020808	exon7	c.G2799C	p.R933S	AATTTCCCTGATG	.	95.0	37.0	110.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1241762	1241762	+	Silent	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SNTG2	NM_018968	exon10	c.C822A	p.A274A	CTCAGCCAACATC	.	48.0	32.0	33.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1241763	1241763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SNTG2	NM_018968	exon10	c.A823T	p.N275Y	TCAGCCAACATCA	.	47.0	31.0	33.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69741762	69741762	+	Silent	SNP	T	T	C	rs77547121		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	AAK1_ENST00000409085,colon,carcinoma,0,2	AAK1	NM_014911	exon13	c.A1617G	p.Q539Q	TTGTTGTTGCTGC	.	39.0	11.0	73.0	0.0	.	121	.	.	.	weak	C|1.000;|0.000	1.000	PASS	Atlas-SNP
IL1A	3552	hgsc.bcm.edu	hg19	2	113540317	113540317	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	IL1A	NM_000575	exon3	c.C72A	p.S24S	ATCAATGGAGGAA	.	124.0	25.0	111.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
FAM168B	130074	hgsc.bcm.edu	hg19	2	131812937	131812937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FAM168B	NM_001009993	exon5	c.C383T	p.P128L	GTTGCAGGCATGC	.	241.0	154.0	196.0	1.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
RAPH1	65059	hgsc.bcm.edu	hg19	2	204304798	204304798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RAPH1	NM_213589	exon14	c.G3115C	p.G1039R	GAACTCCAGGAAG	.	92.0	27.0	56.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
ZFAND2B	130617	hgsc.bcm.edu	hg19	2	220072714	220072714	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZFAND2B	NM_138802	exon4	c.C388T	p.L130L	CATCCACTGGACC	.	156.0	107.0	250.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	hg19	2	225422463	225422463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CUL3	NM_001257198	exon2	c.A195C	p.R65S	TGCATTTCTATAG	.	36.0	24.0	47.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
CMTM7	112616	hgsc.bcm.edu	hg19	3	32433539	32433539	+	Silent	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CMTM7	NM_138410	exon1	c.G141C	p.L47L	GGCCCTGCTGAAA	.	4.0	4.0	0.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55570036	55570036	+	Silent	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIT	NM_000222	exon5	c.C903G	p.V301V	AAATGTCACAACA	.	164.0	58.0	162.0	0.0	.	7396	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73148995	73148995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS3	NM_014243	exon22	c.G3476A	p.S1159N	GCTGAACTGAGGT	.	157.0	51.0	138.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118451949	118451949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DMXL1	NM_005509	exon7	c.A661T	p.I221F	GGAGAAATTGACT	.	95.0	27.0	79.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141035313	141035313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARAP3	NM_022481	exon31	c.C3985G	p.Q1329E	CTGGCTGCTGGTC	.	195.0	58.0	135.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178567002	178567002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS2	NM_014244	exon11	c.C1664T	p.P555L	ATGTCAGGTGTCA	.	190.0	56.0	90.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	56966590	56966590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF451	NM_001257273	exon4	c.C1376T	p.A459V	GGCAGGCCTGGCT	.	73.0	37.0	122.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129766960	129766960	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LAMA2	NM_000426	exon45	c.C6423T	p.A2141A	ACAAGCCAATTCT	.	45.0	19.0	54.0	0.0	.	481	.	.	.	none	.	.	PASS	Atlas-SNP
REPS1	85021	hgsc.bcm.edu	hg19	6	139235873	139235873	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	REPS1	NM_031922	exon15	c.C1743A	p.A581A	AGGATGGGCAACA	.	74.0	33.0	108.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725867	15725867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MEOX2	NM_005924	exon1	c.C161G	p.P54R	TCGTTGGGGTATC	.	161.0	43.0	91.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18975517	18975517	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	HDAC9	NM_178425	exon22	c.C2889T	p.A963A	CACAGCCATCTGT	.	203.0	48.0	105.0	0.0	.	560	.	.	.	none	.	.	PASS	Atlas-SNP
FAM221A	340277	hgsc.bcm.edu	hg19	7	23728992	23728992	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_199136	exon3	c.C344G	p.P115R	ATGTCCCCTTGAA	.	124.0	34.0	84.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NEUROD6	63974	hgsc.bcm.edu	hg19	7	31377935	31377935	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	NEUROD6,NS,carcinoma,0,1	NEUROD6	NM_022728	exon2	c.C948T	p.Y316Y	TAAGTCGTAAGGG	.	107.0	53.0	72.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD9L	219285	hgsc.bcm.edu	hg19	7	92764048	92764048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD9L	NM_152703	exon5	c.T1237A	p.Y413N	CATAGTATGAATT	.	25.0	7.0	17.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92953019	92953019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CCDC132	NM_017667	exon21	c.A1952T	p.Y651F	CAATATATACCTT	.	36.0	7.0	28.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
BHLHA15	168620	hgsc.bcm.edu	hg19	7	97842056	97842056	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	BHLHA15	NM_177455	exon1	c.G435A	p.P145P	GGGGCCGGGCCCC	.	155.0	7.0	37.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100676808	100676808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC17	NM_001040105	exon3	c.A2111G	p.E704G	GTTCTGAGGCTAG	.	234.0	54.0	140.0	0.0	.	804	.	.	.	none	.	.	PASS	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142606703	142606703	+	Silent	SNP	G	G	A	rs368151896		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TRPV5	NM_019841	exon14	c.C1848T	p.S616S	GATCCCGGAGCGA	.	112.0	6.0	52.0	0.0	.	164	.	.	.	weak	.	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139707076	139707076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL22A1	NM_152888	exon33	c.G2639A	p.G880E	GGTTCCCCAGGCA	.	90.0	38.0	108.0	0.0	.	390	.	.	.	none	.	.	PASS	Atlas-SNP
TOP1MT	116447	hgsc.bcm.edu	hg19	8	144397926	144397926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TOP1MT	NM_052963	exon12	c.C1524G	p.H508Q	GGCTTTGTGCTCA	.	75.0	35.0	54.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138649177	138649177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNT1	NM_020822	exon9	c.C709G	p.P237A	TTCATCCCCGTCT	.	55.0	18.0	34.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
GPRIN2	9721	hgsc.bcm.edu	hg19	10	46999193	46999193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GPRIN2	NM_014696	exon3	c.G313A	p.D105N	GGCAGTGACCTGT	.	23.0	8.0	8.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
PNLIPRP1	5407	hgsc.bcm.edu	hg19	10	118357347	118357347	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PNLIPRP1	NM_006229	exon7	c.T582C	p.D194D	GTTGGATCCTGTA	.	149.0	57.0	141.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1094686	1094686	+	Missense_Mutation	SNP	C	C	T	rs375767205		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC2	NM_002457	exon32	c.C5762T	p.T1921M	GTACCACGACCGG	.	165.0	64.0	80.0	0.0	.	614	.	.	.	weak	.	.	PASS	Atlas-SNP
ABTB2	25841	hgsc.bcm.edu	hg19	11	34378951	34378951	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABTB2	NM_145804	exon1	c.C180A	p.S60S	GTTCATGGAGCCG	.	62.0	22.0	13.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
OR4C3	256144	hgsc.bcm.edu	hg19	11	48347236	48347236	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	OR4C3	NM_001004702	exon1	c.C744T	p.Y248Y	CCTGTACTCCTTG	.	280.0	46.0	267.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
RPS6KA4	8986	hgsc.bcm.edu	hg19	11	64136019	64136019	+	Missense_Mutation	SNP	G	G	A	rs199674030	bycluster	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RPS6KA4	NM_003942	exon11	c.G1280A	p.R427H	GTCGCCGCTGCCG	.	13.0	10.0	1.0	0.0	.	85	.	.	.	weak	.	.	PASS	Atlas-SNP
FGF19	9965	hgsc.bcm.edu	hg19	11	69514314	69514314	+	Missense_Mutation	SNP	C	C	T	rs377419016		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FGF19	NM_005117	exon3	c.G367A	p.E123K	CCTCCTCGAAAGC	.	110.0	5.0	106.0	0.0	.	11	.	.	.	weak	.	.	PASS	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108384826	108384826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	EXPH5	NM_015065	exon6	c.G1408A	p.G470R	GTTCTCCGCTTCG	.	109.0	27.0	96.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119027153	119027153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABCG4	NM_022169	exon7	c.G801T	p.M267I	TGAGATGTTTGAC	.	231.0	131.0	199.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18435382	18435382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PIK3C2G	NM_004570	exon2	c.G367A	p.E123K	AATAAAGAATGCT	.	44.0	6.0	40.0	0.0	.	315	.	.	.	none	.	.	PASS	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	33031889	33031889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PKP2	NM_004572	exon2	c.C301T	p.R101C	GGGAACGGCCTCC	.	72.0	4.0	70.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
KRT86	3892	hgsc.bcm.edu	hg19	12	52700004	52700004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KRT86	NM_002284	exon7	c.A1187G	p.K396R	ACTCCAAGCTGGG	.	170.0	52.0	97.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SRGAP1	57522	hgsc.bcm.edu	hg19	12	64491125	64491125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	SRGAP1,NS,carcinoma,0,1	SRGAP1	NM_020762	exon15	c.G1783C	p.E595Q	CCTAAGGAAAGAT	.	54.0	18.0	49.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
CCER1	196477	hgsc.bcm.edu	hg19	12	91347593	91347593	+	Missense_Mutation	SNP	A	A	C	rs137989103		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_152638	exon1	c.T927G	p.D309E	CTCCTCATCTTCG	.	101.0	9.0	97.0	0.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
TBX5	6910	hgsc.bcm.edu	hg19	12	114841566	114841566	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBX5	NM_000192	exon2	c.C138T	p.F46F	CTGGGTGAAGGCG	.	29.0	10.0	8.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	hg19	12	122669246	122669246	+	Silent	SNP	T	T	C	rs373684289		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LRRC43	NM_001098519	exon2	c.T331C	p.L111L	AGAGAATTGGCCA	.	213.0	92.0	181.0	0.0	.	105	.	.	.	weak	.	.	PASS	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124335495	124335495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DNAH10	NM_207437	exon34	c.G5809A	p.G1937S	AACCCCGGCTACG	.	94.0	51.0	28.0	0.0	.	888	.	.	.	none	.	.	PASS	Atlas-SNP
BRI3BP	140707	hgsc.bcm.edu	hg19	12	125509696	125509696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	BRI3BP,NS,carcinoma,0,1	BRI3BP	NM_080626	exon3	c.G476T	p.W159L	TCTTCTGGATCGT	.	90.0	41.0	59.0	1.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	hg19	13	75923415	75923415	+	Silent	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBC1D4	NM_014832	exon5	c.G1299T	p.L433L	CTGTTTCAGAGTC	.	48.0	25.0	72.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20846267	20846267	+	Silent	SNP	G	G	C	rs201698574	by1000genomes;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TEP1	NM_007110	exon39	c.C5637G	p.A1879A	AGGGAAGGCAGCC	.	119.0	40.0	33.0	0.0	.	224	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63447729	63447729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNH5	NM_172375	exon6	c.C803T	p.T268M	AAAGTCGTGTGAA	.	94.0	40.0	121.0	0.0	.	320	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	hg19	14	65053588	65053588	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_172365	exon9	c.G702A	p.K234K	CTGGAAGTTCTTT	.	51.0	11.0	71.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32929467	32929467	+	Silent	SNP	T	T	C	rs373558097	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARHGAP11A	NM_014783	exon12	c.T2493C	p.L831L	ACCTCTTAAGTTT	.	117.0	52.0	125.0	0.0	.	84	.	.	.	alt	.	.	PASS	Atlas-SNP
ZNF770	54989	hgsc.bcm.edu	hg19	15	35275620	35275620	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF770	NM_014106	exon3	c.A16T	p.N6Y	TTAAATTGTTTTC	.	74.0	27.0	79.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	hg19	16	31473812	31473812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARMC5	NM_024742	exon3	c.G944A	p.R315Q	TGATTCGGCCTGC	.	73.0	34.0	11.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	hg19	16	68941414	68941414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_024562	exon10	c.G1736T	p.G579V	ATCTCGGGGACTT	.	147.0	46.0	86.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
AP1G1	164	hgsc.bcm.edu	hg19	16	71779166	71779166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	AP1G1	NM_001030007	exon20	c.A1889C	p.D630A	AATAAATCATTGG	.	112.0	74.0	78.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	hg19	17	1630298	1630298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	WDR81	NM_001163809	exon1	c.C2045T	p.S682F	GCTCCTCCAGTCA	.	45.0	31.0	87.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	rs28934573	bycluster;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	TP53_ENST00000545858,NS,carcinoma,0,4	TP53	NM_000546	exon7	c.C722G	p.S241C	ATGCAGGAACTGT	.	98.0	72.0	203.0	0.0	.	33396	.	.	.	alt	.	.	PASS	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27958146	27958146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SSH2	NM_033389	exon15	c.A3985G	p.T1329A	CTGTTGTTGTGAG	.	133.0	33.0	72.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
NSRP1	84081	hgsc.bcm.edu	hg19	17	28512533	28512533	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	NSRP1	NM_032141	exon7	c.G1518T	p.G506G	GGAAGGGCAAGAG	.	170.0	95.0	125.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
YJEFN3	374887	hgsc.bcm.edu	hg19	19	19640278	19640278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	YJEFN3	NM_198537	exon2	c.G165T	p.Q55H	AAGGCAGTCATGG	.	172.0	39.0	188.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31769063	31769063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TSHZ3	NM_020856	exon2	c.G1636A	p.G546S	GATAGCCCCCCCA	.	171.0	83.0	135.0	0.0	.	549	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39019255	39019255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RYR1	NM_000540	exon75	c.A10954T	p.M3652L	TGTAACATGTTCC	.	219.0	76.0	129.0	0.0	.	708	.	.	.	none	.	.	PASS	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	hg19	19	50918079	50918079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	POLD1	NM_002691	exon20	c.T2396A	p.F799Y	TCTACTTCCCATA	.	96.0	34.0	75.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF548	147694	hgsc.bcm.edu	hg19	19	57908473	57908473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF548	NM_001172773	exon3	c.C109T	p.L37F	GGGCACCTTGATG	.	321.0	126.0	331.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9525075	9525075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	PAK7,rectum,carcinoma,+2,1	PAK7	NM_177990	exon8	c.G1810T	p.V604F	TGCCAACCAATGA	.	99.0	32.0	141.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36869309	36869309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIAA1755	NM_001029864	exon3	c.G1224T	p.E408D	CATATTCTCTGGG	.	53.0	23.0	70.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
SGK2	10110	hgsc.bcm.edu	hg19	20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SGK2	NM_016276	exon6	c.T592C	p.F198L	GCCAGGTTCTACG	.	67.0	15.0	45.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
SEMG1	6406	hgsc.bcm.edu	hg19	20	43836817	43836817	+	Silent	SNP	A	A	G	rs17850164		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	SEMG1,NS,carcinoma,0,2	SEMG1	NM_003007	exon2	c.A879G	p.T293T	AAGTACAGAAGAA	.	148.0	7.0	154.0	1.0	.	71	.	.	.	weak	.	.	PASS	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42289163	42289163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SREBF2	NM_004599	exon12	c.C2251A	p.H751N	CCCGAGCACAGTG	.	78.0	41.0	72.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3850	3850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	ENST00000361390	exon1	c.G544A	p.A182T	CCCTTGGCCATAA	.	22.0	4.0	10.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11556	11556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	ENST00000361381	exon1	c.T797C	p.L266P	TATCCCTATGAGG	.	14.0	10.0	8.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD14	201191	hgsc.bcm.edu	hg19	17	48191564	48191565	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD14	NM_174920	exon9	c.1013_1014del	p.338_338del	.	.	219.0	58.0	147.0	0.0	.	36	.	0.26484	0	none	.	.	PASS	Atlas-Indel,Pindel
PRTG	283659	hgsc.bcm.edu	hg19	15	55931988	55931989	+	In_Frame_Ins	INS	-	-	GGTGGT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG	NM_173814	exon13	c.2176_2177insACCACC	p.H726delinsTTH	.	.	138.0	18.0	170.0	0.0	.	110	.	0.130435	0	none	.	.	PASS	Atlas-INDEL
RTL1	388015	hgsc.bcm.edu	hg19	14	101350131	101350136	+	In_Frame_Del	DEL	TCGTTG	TCGTTG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTG	TCGTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1	NM_001134888	exon1	c.991_996del	p.331_332del	.	.	46.0	14.0	51.0	0.0	.	120	.	0.304348	0	none	.	.	PASS	Atlas-INDEL
MRGPRX3	117195	hgsc.bcm.edu	hg19	11	18159591	18159591	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	MRGPRX3,mouth,carcinoma,0,1	MRGPRX3	NM_054031	exon3	c.841delC	p.R281fs	.	.	65.0	26.0	82.0	0.0	.	59	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
PRTG	283659	hgsc.bcm.edu	hg19	15	55931987	55931988	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG	NM_173814	exon13	c.2177_2178insG	p.H726fs	.	.	138.0	18.0	170.0	0.0	.	110	.	0.130435	0	none	.	.	PASS	Atlas-INDEL
TPM4	7171	hgsc.bcm.edu	hg19	19	16199862	16199862	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TPM4	NM_001145160	exon6	c.570delT	p.C190fs	.	.	80.0	32.0	101.0	0.0	.	28	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
C1orf51	148523	hgsc.bcm.edu	hg19	1	150256865	150256882	+	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	C1orf51	NM_144697	exon3	c.471_488del	p.157_163del	.	.	171.0	27.0	262.0	0.0	.	35	.	0.157895	0	none	.	.	PASS	Atlas-Indel,Pindel
COL21A1	81578	hgsc.bcm.edu	hg19	6	55925556	55925557	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL21A1	NM_030820	exon27	c.2390_2391insT	p.C797fs	.	.	47.0	14.0	69.0	0.0	.	201	.	0.297872	0	none	.	.	PASS	Atlas-Indel,Pindel
RTL1	388015	hgsc.bcm.edu	hg19	14	101350138	101350138	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1	NM_001134888	exon1	c.989delT	p.L330fs	.	.	45.0	14.0	48.0	0.0	.	120	.	0.311111	0	none	.	.	PASS	Atlas-INDEL
PRUNE	58497	hgsc.bcm.edu	hg19	1	151001408	151001408	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRUNE	NM_021222	exon7	c.920delC	p.A307fs	.	.	114.0	43.0	143.0	0.0	.	40	.	0.377193	0	none	.	.	PASS	Atlas-Indel,Pindel
CCER1	196477	hgsc.bcm.edu	hg19	12	91347581	91347582	+	In_Frame_Ins	INS	-	-	TCT	rs376547014		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_152638	exon1	c.939_940insAGA	p.E313delinsEE	.	.	83.0	12.0	84.0	0.0	.	.	.	0.144578	0	weak	.	.	PASS	Atlas-INDEL
RIN3	79890	hgsc.bcm.edu	hg19	14	93117951	93117952	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RIN3	NM_024832	exon6	c.557_558insT	p.P186fs	.	.	39.0	24.0	47.0	0.0	.	81	.	0.615385	0	none	.	.	PASS	Atlas-Indel,Pindel
PCDH12	51294	hgsc.bcm.edu	hg19	5	141334867	141334868	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	PCDH12,bladder,carcinoma,0,1	PCDH12	NM_016580	exon1	c.2550_2551insT	p.F850fs	.	.	158.0	47.0	68.0	0.0	.	133	.	0.297	.	none	.	.	PASS	Pindel
RTL1	388015	hgsc.bcm.edu	hg19	14	101350131	101350138	+	Frame_Shift_Del	DEL	TCGTTGAG	TCGTTGAG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTGAG	TCGTTGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1	NM_001134888	exon1	c.989_996del	p.330_332del	.	.	49.0	14.0	50.0	0.0	.	120	.	0.286	.	none	.	.	PASS	Pindel
PRTG	283659	hgsc.bcm.edu	hg19	15	55931991	55931992	+	Frame_Shift_Ins	INS	-	-	TGGTGGG	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG	NM_173814	exon13	c.2173_2174insCCCACCA	p.P725fs	.	.	132.0	20.0	168.0	0.0	.	110	.	0.152	.	none	.	.	PASS	Pindel
KIF1A	547	hgsc.bcm.edu	hg19	2	241658528	241658528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIF1A	NM_001244008	exon47	c.5110delT	p.Y1704fs	.	.	289.0	95.0	79.0	0.0	.	152	.	0.329	.	none	.	.	PASS	Pindel
