Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
WDR65	149465	hgsc.bcm.edu	hg19	1	43685098	43685098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR65	NM_001195831	exon13	c.A2137G	p.M713V	TTAAAAATGGAGA	.	85.0	38.0	103.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA6	54558	hgsc.bcm.edu	hg19	1	48918785	48918785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SPATA6	NM_019073	exon2	c.G70A	p.V24M	TAAGCACGACTCC	.	71.0	30.0	72.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
GTF2B	2959	hgsc.bcm.edu	hg19	1	89352944	89352944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GTF2B	NM_001514	exon2	c.G124C	p.G42R	ACTCACCTACAAC	.	82.0	39.0	85.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf146	388649	hgsc.bcm.edu	hg19	1	92707844	92707844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C1orf146	NM_001012425	exon3	c.A142C	p.I48L	GGATCAATTATAT	.	20.0	10.0	13.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF697	90874	hgsc.bcm.edu	hg19	1	120165395	120165395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF697	NM_001080470	exon3	c.C1571T	p.A524V	CAGCCCGCACACT	.	86.0	36.0	53.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	68.0	12.0	78.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
CREG1	8804	hgsc.bcm.edu	hg19	1	167515417	167515417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CREG1	NM_003851	exon3	c.A580T	p.I194L	TGGTTATATTCAA	.	105.0	46.0	128.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
MARC1	64757	hgsc.bcm.edu	hg19	1	220960439	220960439	+	Silent	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_022746	exon1	c.G153T	p.L51L	GCGGCTGCTGCAG	.	25.0	10.0	3.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CEBPZ	10153	hgsc.bcm.edu	hg19	2	37455042	37455042	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CEBPZ	NM_005760	exon2	c.A1294T	p.N432Y	TGATATTTGAGCG	.	113.0	37.0	74.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
CAMKMT	79823	hgsc.bcm.edu	hg19	2	44589184	44589184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CAMKMT	NM_024766	exon1	c.C38T	p.T13I	GCGAGACCGCGCG	.	62.0	31.0	2.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
GCC2	9648	hgsc.bcm.edu	hg19	2	109087879	109087879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GCC2	NM_181453	exon6	c.T2094A	p.S698R	ACTCAGTTCAGAA	.	172.0	39.0	95.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
ORC4	5000	hgsc.bcm.edu	hg19	2	148695764	148695764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ORC4	NM_002552	exon13	c.A1073T	p.Q358L	TTCCTTTGAACAA	.	156.0	8.0	141.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159459582	159459582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PKP4	NM_001005476	exon4	c.C246A	p.S82R	CTTTAGCTCAACT	.	104.0	23.0	117.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
GPR155	151556	hgsc.bcm.edu	hg19	2	175331330	175331330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR155	NM_001033045	exon7	c.T1208C	p.L403S	TTACTCAAAAGAA	.	150.0	47.0	106.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	203972839	203972839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NBEAL1	NM_001114132	exon13	c.G1790A	p.W597X	GTGCTTGGTTTTG	.	121.0	71.0	117.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf62	375307	hgsc.bcm.edu	hg19	2	219222408	219222408	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C2orf62	NM_198559	exon3	c.C270T	p.A90A	GCATGCCTCTAGC	.	73.0	37.0	60.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49161312	49161312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB2	NM_002292	exon24	c.C3646G	p.Q1216E	ACTCCTGCGCCCG	.	84.0	57.0	72.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
ANAPC10	10393	hgsc.bcm.edu	hg19	4	145916549	145916549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ANAPC10	NM_001256709	exon7	c.C567A	p.F189L	CATCATGAAATCT	.	51.0	27.0	48.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33658354	33658354	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ADAMTS12	NM_030955	exon7	c.T1125C	p.S375S	GTTACAACTGCGG	.	169.0	10.0	196.0	0.0	.	464	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90281309	90281309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR98	NM_032119	exon85	c.C18122T	p.S6041L	GCATGTCACAGAT	.	157.0	54.0	193.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	hg19	5	109904274	109904274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TMEM232	NM_001039763	exon11	c.A1329C	p.K443N	TGAAATTTTCACC	.	71.0	34.0	60.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135561911	135561911	+	Silent	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TRPC7	NM_020389	exon9	c.A2073T	p.R691R	TTTTGCTCGGGCG	.	96.0	47.0	108.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137903216	137903216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HSPA9	NM_004134	exon7	c.A644G	p.N215S	AGCACATTCAGTC	.	69.0	7.0	90.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	hg19	5	140176265	140176265	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCDHA2	NM_031495	exon1	c.C1716A	p.T572T	TGGCACCGCTGCT	.	177.0	13.0	7.0	0.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140953451	140953451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DIAPH1	NM_005219	exon16	c.C1966A	p.P656T	GCAAAGGAGGGGG	.	54.0	25.0	49.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PCYOX1L	78991	hgsc.bcm.edu	hg19	5	148747898	148747898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCYOX1L	NM_024028	exon6	c.A1166T	p.Q389L	AGCCCCAGGAGGC	.	107.0	42.0	125.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
RARS	5917	hgsc.bcm.edu	hg19	5	167937680	167937680	+	Nonsense_Mutation	SNP	G	G	T	rs148161788	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	RARS,NS,carcinoma,0,2	RARS	NM_002887	exon12	c.G1441T	p.E481X	GAAAAAGAAAGAG	.	128.0	51.0	135.0	0.0	.	58	.	.	.	alt	.	.	PASS	Atlas-SNP
DDX41	51428	hgsc.bcm.edu	hg19	5	176943307	176943307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DDX41	NM_016222	exon3	c.C280G	p.L94V	CTTTAAGGTGCTG	.	84.0	36.0	102.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
DCDC2	51473	hgsc.bcm.edu	hg19	6	24357769	24357769	+	Silent	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DCDC2	NM_001195610	exon2	c.T210A	p.T70T	GTGGCCAGTCCGC	.	74.0	4.0	70.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40399589	40399589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LRFN2	NM_020737	exon2	c.C1264A	p.P422T	GTTCCGGGGGGCT	.	56.0	23.0	56.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
BVES	11149	hgsc.bcm.edu	hg19	6	105563684	105563684	+	Missense_Mutation	SNP	G	G	A	rs370149373		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	BVES	NM_001199563	exon7	c.C835T	p.H279Y	GCTGATGTTCCAG	.	97.0	32.0	95.0	0.0	.	33	.	.	.	weak	.	.	PASS	Atlas-SNP
FBXL13	222235	hgsc.bcm.edu	hg19	7	102553614	102553614	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FBXL13	NM_001111038	exon11	c.C927T	p.F309F	GTCTGTGAACCGT	.	169.0	38.0	170.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107605061	107605061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB1	NM_002291	exon14	c.C1634G	p.P545R	TAACCAGGTTCCA	.	202.0	73.0	153.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
FAM108B1	51104	hgsc.bcm.edu	hg19	9	74489541	74489541	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM108B1	NM_016014	exon2	c.T456C	p.A152A	CCTAAGAGCAAGC	.	90.0	4.0	86.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
FAM178A	55719	hgsc.bcm.edu	hg19	10	102675796	102675796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM178A	NM_001136123	exon2	c.C181T	p.Q61X	TCAAAACAAGGTA	.	55.0	20.0	66.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	hg19	10	122665493	122665493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR11	NM_018117	exon27	c.T3397A	p.S1133T	CTCCTCTCTCTGG	.	122.0	48.0	115.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
TCIRG1	10312	hgsc.bcm.edu	hg19	11	67817430	67817430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TCIRG1	NM_006019	exon17	c.A2015G	p.E672G	CCCAGGAGGAAAA	.	72.0	38.0	62.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89868775	89868775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NAALAD2	NM_005467	exon2	c.A131G	p.H44R	GCTATCATCAAAG	.	58.0	10.0	30.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
NT5DC3	51559	hgsc.bcm.edu	hg19	12	104182695	104182695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NT5DC3	NM_001031701	exon10	c.C1022G	p.P341R	CGGAAAGGCCTAA	.	106.0	46.0	117.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
RGCC	28984	hgsc.bcm.edu	hg19	13	42031876	42031876	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_014059	exon1	c.G33A	p.A11A	CCCCGCGGCCGCC	.	25.0	14.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	hg19	13	46170728	46170728	+	Missense_Mutation	SNP	T	T	C	rs45625342	bycluster	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	FAM194B,NS,carcinoma,0,1	FAM194B	NM_182542	exon3	c.A413G	p.E138G	AGATACTCTTCCT	.	66.0	5.0	36.0	0.0	.	42	.	.	.	weak	.	.	PASS	Atlas-SNP
NKX2-1	7080	hgsc.bcm.edu	hg19	14	36988288	36988288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	NKX2-1,NS,malignant_melanoma,0,1	NKX2-1	NM_001079668	exon2	c.G365T	p.G122V	ATGTTGCCCAGGT	.	26.0	13.0	5.0	1.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	hg19	14	58796735	58796735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ARID4A	NM_002892	exon11	c.A754C	p.S252R	AAAGCAAGCATCT	.	151.0	66.0	171.0	0.0	.	222	.	.	.	none	.	.	PASS	Atlas-SNP
TTC8	123016	hgsc.bcm.edu	hg19	14	89338717	89338717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TTC8	NM_144596	exon13	c.C1268T	p.A423V	GGCTGGCTCTGGT	.	122.0	58.0	138.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31342655	31342655	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TRPM1	NM_001252020	exon11	c.T1445A	p.V482E	TCCTCCACTTCCT	.	100.0	38.0	117.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35189882	35189882	+	Silent	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	AQR	NM_014691	exon21	c.A2268C	p.G756G	CCCTTTTCCACTT	.	79.0	30.0	63.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	hg19	16	64981793	64981793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	CDH11,colon,carcinoma,0,1	CDH11	NM_001797	exon13	c.T2104C	p.Y702H	GCATGTACTGATA	.	223.0	117.0	106.0	0.0	.	260	.	.	.	none	.	.	PASS	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	hg19	17	9501596	9501596	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR16	NM_145054	exon5	c.C582A	p.I194I	AAAAATCTGGCCA	.	54.0	14.0	31.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74738356	74738356	+	Splice_Site	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MFSD11	NM_001242534	exon6	c.437+1G>A	.	GTCTAGGTAATTA	.	180.0	10.0	120.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	hg19	18	9887074	9887074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TXNDC2	NM_001098529	exon2	c.G598A	p.E200K	TCAGAAGAAGCCA	.	114.0	7.0	117.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
CABLES1	91768	hgsc.bcm.edu	hg19	18	20768825	20768825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CABLES1	NM_001100619	exon2	c.C869T	p.S290F	AGAGATCTTCCTT	.	24.0	7.0	29.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
FHOD3	80206	hgsc.bcm.edu	hg19	18	34310626	34310626	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FHOD3	NM_025135	exon17	c.A2910G	p.G970G	AGATGGAAAAAGG	.	85.0	4.0	79.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1041554	1041554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ABCA7	NM_019112	exon3	c.A112T	p.I38F	TTCTTCATCCTGG	.	25.0	9.0	26.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
EVI5L	115704	hgsc.bcm.edu	hg19	19	7927064	7927064	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EVI5L	NM_001159944	exon15	c.C1701T	p.G567G	CGTGGGCGAGCTG	.	15.0	10.0	4.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31768208	31768208	+	Missense_Mutation	SNP	C	C	T	rs201694059	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TSHZ3	NM_020856	exon2	c.G2491A	p.V831I	ATGATACGACGGC	.	199.0	81.0	199.0	0.0	.	549	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
ZNF181	339318	hgsc.bcm.edu	hg19	19	35231657	35231657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF181	NM_001029997	exon4	c.T371C	p.I124T	AATATATAGAGAA	.	107.0	29.0	103.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	hg19	19	38850108	38850108	+	Splice_Site	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CATSPERG	NM_021185	exon14	c.1497-2A>T	.	CCCTGCAGCTCTA	.	69.0	33.0	88.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39966780	39966780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SUPT5H	NM_003169	exon28	c.G3084C	p.E1028D	CAGTGAGCACCTG	.	86.0	10.0	112.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC9	26093	hgsc.bcm.edu	hg19	19	47763935	47763935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CCDC9	NM_015603	exon5	c.G301A	p.G101S	CAGGGAGGCCGGG	.	7.0	6.0	0.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48205552	48205552	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GLTSCR1	NM_015711	exon15	c.C4563T	p.P1521P	CGCGCCCTCGTAC	.	13.0	7.0	0.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
OLIG1	116448	hgsc.bcm.edu	hg19	21	34442850	34442850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OLIG1	NM_138983	exon1	c.G298C	p.E100Q	GCCAAGGAGGAGC	.	22.0	13.0	0.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP10-3	386682	hgsc.bcm.edu	hg19	21	45978023	45978023	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KRTAP10-3	NM_198696	exon1	c.C576T	p.A192A	GCAGGAGGCCGGG	.	165.0	9.0	14.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
EIF3L	51386	hgsc.bcm.edu	hg19	22	38273745	38273745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EIF3L	NM_016091	exon11	c.G1142A	p.R381H	CCATGCGTATTGA	.	198.0	77.0	260.0	1.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	hg19	22	40283710	40283710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ENTHD1	NM_152512	exon2	c.T43G	p.S15A	CATCTGAGTAATT	.	22.0	8.0	39.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
CENPM	79019	hgsc.bcm.edu	hg19	22	42339699	42339699	+	Missense_Mutation	SNP	C	C	T	rs138744954	bycluster	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CENPM	NM_024053	exon5	c.G317A	p.R106Q	CTCTCCCGCCCAG	.	94.0	37.0	138.0	0.0	.	8	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
MCAT	27349	hgsc.bcm.edu	hg19	22	43539309	43539309	+	Missense_Mutation	SNP	C	C	A	rs200527554	bycluster	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MCAT	NM_014507	exon1	c.G46T	p.A16S	AGCTGGCGCCCAA	.	6.0	6.0	0.0	0.0	.	26	.	.	.	weak	.	.	PASS	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48676773	48676773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HDAC6	NM_006044	exon22	c.A2141G	p.D714G	ATGCTGACTACCT	.	88.0	77.0	95.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINA7	6906	hgsc.bcm.edu	hg19	X	105280775	105280775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINA7	NM_000354	exon2	c.T275C	p.I92T	TCCACAATCTCAG	.	46.0	6.0	45.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123637524	123637524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001163278	exon19	c.C3331A	p.P1111T	AGTCAGGGCACGT	.	155.0	132.0	134.0	1.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ASAH1	427	hgsc.bcm.edu	hg19	8	17916973	17916973	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ASAH1	NM_004315	exon12	c.967delC	p.L323fs	.	.	66.0	25.0	77.0	0.0	.	71	.	0.378788	0	none	.	.	PASS	Atlas-Indel,Pindel
RENBP	5973	hgsc.bcm.edu	hg19	X	153200984	153200985	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RENBP	NM_002910	exon10	c.1123_1124insA	p.E375fs	.	.	171.0	144.0	139.0	0.0	.	69	.	0.842105	0	none	.	.	PASS	Atlas-Indel,Pindel
SEC14L2	23541	hgsc.bcm.edu	hg19	22	30818390	30818391	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SEC14L2	NM_012429	exon12	c.1206_1207insA	p.P402fs	.	.	62.0	21.0	82.0	0.0	.	24	.	0.33871	0	none	.	.	PASS	Atlas-Indel,Pindel
STMN4	81551	hgsc.bcm.edu	hg19	8	27097616	27097616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	STMN4	NM_030795	exon6	c.464delA	p.Q155fs	.	.	129.0	10.0	164.0	0.0	.	28	.	0.0775194	0	none	.	.	PASS	Atlas-INDEL
SERPINF1	5176	hgsc.bcm.edu	hg19	17	1679947	1679953	+	Frame_Shift_Del	DEL	GAGAACT	GAGAACT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	GAGAACT	GAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINF1	NM_002615	exon7	c.907_913del	p.303_305del	.	.	133.0	60.0	137.0	0.0	.	31	.	0.451128	0	none	.	.	PASS	Atlas-Indel,Pindel
NEB	4703	hgsc.bcm.edu	hg19	2	152579988	152579989	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	NEB,NS,neuroblastoma,0,1	NEB	NM_004543	exon9	c.625_626insT	p.E209_D210delinsX	.	.	120.0	67.0	72.0	0.0	.	1697	.	0.558333	0	none	.	.	PASS	Atlas-Indel,Pindel
OR5T2	219464	hgsc.bcm.edu	hg19	11	56000572	56000573	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OR5T2	NM_001004746	exon1	c.90_91del	p.30_31del	.	.	106.0	39.0	110.0	0.0	.	107	.	0.367925	0	none	.	.	PASS	Atlas-Indel,Pindel
CITED2	10370	hgsc.bcm.edu	hg19	6	139694300	139694309	+	Frame_Shift_Del	DEL	CACACGAAGT	CACACGAAGT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CACACGAAGT	CACACGAAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CITED2	NM_001168389	exon2	c.789_798del	p.263_266del	.	.	57.0	15.0	89.0	0.0	.	16	.	0.263158	0	none	.	.	PASS	Atlas-Indel,Pindel
GMIP	51291	hgsc.bcm.edu	hg19	19	19745515	19745515	+	Splice_Site	DEL	G	G	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GMIP	NM_016573	exon19	c.1888-2C>-	.	.	.	82.0	36.0	88.0	0.0	.	55	.	0.439024	0	none	.	.	PASS	Atlas-Indel,Pindel
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64603951	64603963	+	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	CCAGCTGGGGGCC	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CCAGCTGGGGGCC	CCAGCTGGGGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CDC42BPG	NM_017525	exon12	c.1425_1437del	p.475_479del	.	.	62.0	10.0	99.0	0.0	.	101	.	0.161	.	none	.	.	PASS	Pindel
