Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63066787	63066787	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANGPTL3	NM_014495	exon3	c.A641A	p.K214K	CAGAAATTTCTCT	.	128.0	18.0	142.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145562384	145562384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD35	NM_144698	exon10	c.G2072C	p.R691P	AGCTGCGGAAGCT	.	49.0	7.0	61.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	hg19	1	169094257	169094257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ATP1B1	NM_001677	exon3	c.T362G	p.M121R	ATGACATGATTTT	.	320.0	60.0	302.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ARID4B	51742	hgsc.bcm.edu	hg19	1	235386544	235386544	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARID4B	NM_016374	exon13	c.A1002G	p.G334G	TCGATATCCAAGT	.	42.0	6.0	48.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54135515	54135515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSME4	NM_014614	exon24	c.A2726G	p.H909R	AATTCATGCTTGT	.	46.0	8.0	62.0	0.0	.	247	.	.	.	none	.	.	PASS	Atlas-SNP
PCBP1	5093	hgsc.bcm.edu	hg19	2	70314950	70314950	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCBP1	NM_006196	exon1	c.A75G	p.V25V	GGAAGTAGGAAGC	.	164.0	40.0	176.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166915109	166915109	+	Silent	SNP	C	C	T	rs121917959	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN1A	NM_001165964	exon2	c.G354A	p.R118R	TATTTTCCTAAGA	.	95.0	13.0	80.0	0.0	.	641	.	.	.	alt	.	.	PASS	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170815017	170815017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBR3	NM_172070	exon24	c.G3615A	p.M1205I	CTTTATGGAAACT	.	134.0	26.0	123.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
SSFA2	6744	hgsc.bcm.edu	hg19	2	182765433	182765433	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SSFA2	NM_001130445	exon7	c.T514C	p.L172L	TCAGAATTGTTGG	.	103.0	18.0	99.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
GLS	2744	hgsc.bcm.edu	hg19	2	191797555	191797555	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GLS	NM_001256310	exon15	c.A1764G	p.V588V	TGTAGTATATAGA	.	64.0	13.0	51.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201478584	201478584	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AOX1	NM_001159	exon15	c.C1506T	p.S502S	AGTCTCCCTTTTG	.	76.0	17.0	71.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB3	414061	hgsc.bcm.edu	hg19	2	234652372	234652372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001001394	exon1	c.T191C	p.I64T	TCATAGATATCGC	.	239.0	37.0	254.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238234213	238234213	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL6A3	NM_004369	exon43	c.T9483A	p.V3161V	AGCGCAAACCTTT	.	231.0	53.0	224.0	0.0	.	608	.	.	.	none	.	.	PASS	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239184526	239184526	+	Silent	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PER2	NM_022817	exon4	c.T306G	p.S102S	TTTCGAAGACTGG	.	116.0	19.0	110.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFB5	4711	hgsc.bcm.edu	hg19	3	179334831	179334831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NDUFB5	NM_002492	exon4	c.A341C	p.K114T	ATTATAAGGTTTG	.	76.0	28.0	77.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	74014608	74014608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD17	NM_198889	exon8	c.A1489T	p.N497Y	CATCATTGACCTC	.	90.0	15.0	91.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83719607	83719607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	SCD5_ENST00000273908,NS,carcinoma,0,2	SCD5	NM_024906	exon1	c.G84C	p.E28D	GCCGCCCTCAGAG	.	39.0	5.0	33.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
GUCY1B3	2983	hgsc.bcm.edu	hg19	4	156725753	156725753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	GUCY1B3,colon,carcinoma,0,1	GUCY1B3	NM_000857	exon12	c.A1563G	p.I521M	AACAATAGGGATA	.	165.0	21.0	161.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC110	256309	hgsc.bcm.edu	hg19	4	186380443	186380443	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCDC110	NM_152775	exon6	c.A1298T	p.N433I	AGGTAATTCTGTA	.	261.0	51.0	285.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	31983432	31983432	+	Silent	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PDZD2	NM_178140	exon2	c.C648G	p.T216T	ACGAACCAGAAAG	.	138.0	30.0	149.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
ISL1	3670	hgsc.bcm.edu	hg19	5	50683584	50683584	+	Splice_Site	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ISL1	NM_002202	exon3	c.478+1G>T	.	TGGCAGGTACTCC	.	51.0	18.0	43.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71739940	71739940	+	Nonsense_Mutation	SNP	G	G	C	rs373642159	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	ZNF366,NS,carcinoma,0,1	ZNF366	NM_152625	exon5	c.C1878G	p.Y626X	CACCTCGTAGCAG	.	372.0	65.0	343.0	0.0	.	108	.	.	.	alt	.	.	PASS	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140222316	140222316	+	Silent	SNP	G	G	C	rs202126810	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	PCDHA8_ENST00000531613,rectum,carcinoma,0,2	PCDHA8	NM_031856	exon1	c.G1410C	p.P470P	CCCGCCGGGCTGC	.	123.0	16.0	139.0	0.0	.	366	.	.	.	alt	G|0.999;T|0.001	.	PASS	Atlas-SNP
ARHGAP26	23092	hgsc.bcm.edu	hg19	5	142513635	142513635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGAP26	NM_015071	exon19	c.T1802A	p.L601Q	GGCCCCTGACGCT	.	187.0	31.0	188.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145641187	145641187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RBM27	NM_018989	exon13	c.T2008G	p.L670V	CGAGTCTTGTGGC	.	229.0	34.0	176.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
CPEB4	80315	hgsc.bcm.edu	hg19	5	173370039	173370039	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CPEB4	NM_030627	exon4	c.T1269G	p.Y423X	GACATATGGGCGA	.	328.0	44.0	266.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
MAK	4117	hgsc.bcm.edu	hg19	6	10796389	10796389	+	Missense_Mutation	SNP	C	C	G	rs201812469	bycluster;by1000genomes;alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAK	NM_005906	exon9	c.G985C	p.D329H	CCTGATCGATTAT	.	130.0	26.0	142.0	0.0	.	47	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30679993	30679993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	MDC1_ENST00000376406,NS,carcinoma,0,1	MDC1	NM_014641	exon5	c.G1726A	p.D576N	CACAGTCCCCATG	.	63.0	15.0	74.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
SLC39A7	7922	hgsc.bcm.edu	hg19	6	33169242	33169242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC39A7	NM_006979	exon1	c.G220C	p.G74R	TGGCATGGACATA	.	100.0	21.0	115.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110086287	110086287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FIG4	NM_014845	exon14	c.A1506T	p.K502N	GGGAAAATGTGCT	.	135.0	25.0	114.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
AGR2	10551	hgsc.bcm.edu	hg19	7	16837318	16837318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGR2	NM_006408	exon6	c.T331C	p.Y111H	TTTCATACTAAAA	.	60.0	14.0	63.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
AGR2	10551	hgsc.bcm.edu	hg19	7	16837319	16837319	+	Splice_Site	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGR2	NM_006408	exon7	c.331-1G>T	.	TTCATACTAAAAT	.	59.0	13.0	64.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20778604	20778604	+	Splice_Site	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	ABCB5_ENST00000404938,mucosal,malignant_melanoma,0,2	ABCB5	NM_001163941	exon24	c.2868-2A>G	.	TTTGATAGAGTTT	.	48.0	7.0	51.0	0.0	.	357	.	.	.	none	.	.	PASS	Atlas-SNP
SBDS	51119	hgsc.bcm.edu	hg19	7	66459200	66459200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SBDS	NM_016038	exon2	c.A257G	p.Q86R	CCCACCTGCTTAC	.	188.0	33.0	151.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	hg19	7	107115465	107115465	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GPR22	NM_005295	exon3	c.T960A	p.S320S	TATTTCTACATTT	.	116.0	22.0	129.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
IQUB	154865	hgsc.bcm.edu	hg19	7	123136764	123136764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	IQUB	NM_178827	exon7	c.A1220G	p.Y407C	GCATTATAAAGAA	.	84.0	17.0	85.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	hg19	7	140453193	140453193	+	Missense_Mutation	SNP	T	T	C	rs121913370		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	BRAF,NS,malignant_melanoma,0,16	BRAF	NM_004333	exon15	c.A1742G	p.N581S	AATATATCTGAGG	.	106.0	18.0	104.0	0.0	.	36346	.	.	.	weak	.	.	PASS	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	hg19	9	86485505	86485505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KIF27	NM_017576	exon12	c.A2686T	p.K896X	CAGCTTTCGGTTT	.	143.0	18.0	128.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	hg19	9	90254289	90254289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DAPK1	NM_004938	exon5	c.G444C	p.L148F	GCTTTTGGATAGA	.	179.0	27.0	165.0	0.0	.	329	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD5	5711	hgsc.bcm.edu	hg19	9	123591454	123591454	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSMD5	NM_005047	exon5	c.A594G	p.E198E	TAAAGATTCTGGT	.	110.0	17.0	94.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131339498	131339498	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SPTAN1	NM_003127	exon7	c.T876C	p.A292A	TCAGGCTCTGCTT	.	203.0	43.0	201.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138683918	138683918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KCNT1	NM_020822	exon31	c.G3619A	p.V1207M	GCTCACGTGGCCA	.	42.0	7.0	24.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	hg19	10	62648933	62648933	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RHOBTB1	NM_014836	exon6	c.A493T	p.R165X	CCCCTCTCTTTAT	.	122.0	14.0	107.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	hg19	10	101458575	101458575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ENTPD7	NM_020354	exon10	c.G1295C	p.G432A	GCATTGGTGGCCG	.	69.0	12.0	83.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
NFKB2	4791	hgsc.bcm.edu	hg19	10	104156717	104156717	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NFKB2	NM_001077494	exon6	c.C300T	p.D100D	CAGTGACCCACCT	.	54.0	7.0	53.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
CCKBR	887	hgsc.bcm.edu	hg19	11	6291417	6291417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCKBR	NM_176875	exon3	c.G503A	p.R168H	AGACGCGCTCCCA	.	51.0	11.0	52.0	0.0	.	232	.	.	.	none	.	.	PASS	Atlas-SNP
MAPK8IP1	9479	hgsc.bcm.edu	hg19	11	45926284	45926284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	MAPK8IP1,NS,carcinoma,0,1	MAPK8IP1	NM_005456	exon9	c.C1792T	p.R598W	ACCCGCCGGCTCA	.	116.0	21.0	149.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
MADD	8567	hgsc.bcm.edu	hg19	11	47345285	47345285	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MADD	NM_130475	exon31	c.G4441C	p.E1481Q	TGGTACGAGAAGC	.	96.0	18.0	88.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563325	55563325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR5D14	NM_001004735	exon1	c.C294A	p.S98R	CTTTAGCTGCATG	.	82.0	7.0	89.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563326	55563326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR5D14	NM_001004735	exon1	c.T295A	p.C99S	TTTAGCTGCATGA	.	81.0	7.0	91.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63064875	63064875	+	Missense_Mutation	SNP	C	C	T	rs200183991	bycluster	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC22A10	NM_001039752	exon3	c.C607T	p.R203C	GTACTACGCTTCT	.	232.0	31.0	217.0	0.0	.	79	.	.	.	weak	.	.	PASS	Atlas-SNP
NUMA1	4926	hgsc.bcm.edu	hg19	11	71724282	71724282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NUMA1	NM_006185	exon15	c.G4267A	p.A1423T	GCTGAGCTGTTCG	.	123.0	25.0	119.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73021440	73021440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGEF17	NM_014786	exon1	c.T1757C	p.I586T	CCCTCATCGTCCA	.	88.0	13.0	84.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	hg19	11	76944148	76944148	+	Silent	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GDPD4	NM_182833	exon13	c.C1311G	p.A437A	GCACCAGGCCAGT	.	87.0	9.0	83.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	PCF11_ENST00000298281,NS,carcinoma,0,4	PCF11	NM_015885	exon5	c.A1751G	p.N584S	AGGAGAATGTAGA	.	104.0	20.0	113.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
CASP4	837	hgsc.bcm.edu	hg19	11	104825523	104825523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CASP4	NM_001225	exon2	c.G213A	p.M71I	AAGAAGCATTTGT	.	224.0	37.0	222.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
FKBP4	2288	hgsc.bcm.edu	hg19	12	2909578	2909578	+	Silent	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FKBP4	NM_002014	exon8	c.T867G	p.A289A	GCAAGCTTTACTA	.	58.0	10.0	49.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6707540	6707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CHD4	NM_001273	exon11	c.C1534T	p.Q512X	GTGGCTGACCCCA	.	278.0	43.0	285.0	0.0	.	539	.	.	.	none	.	.	PASS	Atlas-SNP
RASSF8	11228	hgsc.bcm.edu	hg19	12	26217472	26217472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RASSF8	NM_007211	exon4	c.A145T	p.T49S	AGAGATACTGAAA	.	179.0	32.0	164.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40681240	40681240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LRRK2	NM_198578	exon20	c.A2588T	p.N863I	ATGGAAATTTTTC	.	110.0	22.0	94.0	0.0	.	763	.	.	.	none	.	.	PASS	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	hg19	12	42858293	42858293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PRICKLE1	NM_001144882	exon7	c.C1543T	p.Q515X	ACCACTGTGTTTC	.	157.0	29.0	131.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46318586	46318586	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCAF11	NM_004719	exon12	c.A3831T	p.P1277P	TGGTGGTGGTAGT	.	92.0	18.0	127.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
MBD6	114785	hgsc.bcm.edu	hg19	12	57922959	57922959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MBD6	NM_052897	exon13	c.C2954T	p.P985L	CTCTGCCTCCCCG	.	93.0	23.0	121.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
USP15	9958	hgsc.bcm.edu	hg19	12	62795034	62795034	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	USP15	NM_001252078	exon21	c.T2742A	p.T914T	CTCCACTGCATCT	.	71.0	17.0	82.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105433493	105433493	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ALDH1L2	NM_001034173	exon17	c.G2043A	p.K681K	ATACCTCTTCATG	.	115.0	17.0	98.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PXN	5829	hgsc.bcm.edu	hg19	12	120653399	120653399	+	Silent	SNP	G	G	A	rs374919882		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PXN	NM_001080855	exon7	c.C897T	p.G299G	CCGCCCGCCGTCC	.	75.0	15.0	110.0	0.0	.	69	.	.	.	weak	.	.	PASS	Atlas-SNP
OR4N5	390437	hgsc.bcm.edu	hg19	14	20612708	20612708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR4N5	NM_001004724	exon1	c.T814G	p.S272A	GTAGTTTCTCTTT	.	437.0	79.0	374.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf182	283551	hgsc.bcm.edu	hg19	14	50472313	50472313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf182	NM_001012706	exon1	c.A205G	p.R69G	CGGACCTTGGAGG	.	160.0	24.0	183.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75516130	75516130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MLH3	NM_014381	exon2	c.A229T	p.K77X	GGCATTTACTGGT	.	100.0	17.0	110.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	hg19	14	91642321	91642321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf159	NM_001102368	exon7	c.T651A	p.D217E	CGGGGATGCCATG	.	102.0	18.0	94.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R5C	5527	hgsc.bcm.edu	hg19	14	102323022	102323022	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PPP2R5C	NM_001161725	exon4	c.188-1G>A	.	TTTTCAGATGTTC	.	311.0	56.0	353.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104027517	104027517	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	BAG5	NM_001015049	exon2	c.T108A	p.T36T	GTGTTCAGTTTCA	.	179.0	34.0	169.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
SCG3	29106	hgsc.bcm.edu	hg19	15	51993377	51993377	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCG3	NM_013243	exon10	c.A1143G	p.G381G	ATATGGAAGCTTG	.	104.0	24.0	123.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2807812	2807812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRRM2	NM_016333	exon4	c.A381T	p.L127F	AGAATTAAATGAG	.	207.0	32.0	149.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28157419	28157419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	XPO6	NM_015171	exon9	c.A1330T	p.N444Y	ACCTGTTGAGAAC	.	292.0	80.0	242.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	hg19	16	31090723	31090723	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF646	NM_014699	exon2	c.G3078A	p.E1026E	TCAAGAGGGAGCA	.	232.0	34.0	252.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
HAS3	3038	hgsc.bcm.edu	hg19	16	69143465	69143465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	HAS3	NM_138612	exon2	c.T167A	p.L56Q	TGCACCTGCTCAT	.	100.0	13.0	88.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SLC38A8	146167	hgsc.bcm.edu	hg19	16	84063153	84063153	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC38A8	NM_001080442	exon5	c.T636C	p.P212P	GGAGGCAGGGCTG	.	81.0	29.0	68.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM220	388335	hgsc.bcm.edu	hg19	17	10626593	10626593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TMEM220	NM_001004313	exon5	c.C341G	p.S114C	TTTGAGGAACTGT	.	125.0	18.0	117.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
FBXW10	10517	hgsc.bcm.edu	hg19	17	18653137	18653137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FBXW10	NM_001267585	exon3	c.T773A	p.L258X	ATCTATTGGTTGA	.	314.0	49.0	302.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
DHX58	79132	hgsc.bcm.edu	hg19	17	40262859	40262859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DHX58	NM_024119	exon5	c.A443T	p.Q148L	AGGTACTGGCTCA	.	140.0	24.0	152.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47375980	47375980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MYO5B	NM_001080467	exon32	c.A4272T	p.K1424N	TTGCTTTTTGAGC	.	494.0	65.0	475.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	hg19	19	24309780	24309780	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF254	NM_203282	exon4	c.A978G	p.E326E	TGAAGAATGTGGC	.	94.0	12.0	123.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
UBA2	10054	hgsc.bcm.edu	hg19	19	34924279	34924279	+	Missense_Mutation	SNP	G	G	A	rs370848936		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBA2	NM_005499	exon4	c.G320A	p.R107Q	TTTTCCGACAGTT	.	197.0	36.0	223.0	0.0	.	53	.	.	.	weak	.	.	PASS	Atlas-SNP
LAIR1	3903	hgsc.bcm.edu	hg19	19	54872527	54872527	+	Silent	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LAIR1	NM_021706	exon3	c.G360T	p.V120V	ACCTTTCACCAGC	.	197.0	37.0	226.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF773	374928	hgsc.bcm.edu	hg19	19	58018029	58018029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773	NM_198542	exon4	c.G566A	p.R189K	GAAAAAGGCATTA	.	56.0	5.0	45.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF773	374928	hgsc.bcm.edu	hg19	19	58018032	58018032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773	NM_198542	exon4	c.A569G	p.H190R	AAAGGCATTACAA	.	61.0	5.0	45.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46902710	46902710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL18A1	NM_030582	exon14	c.G2216A	p.G739D	TACAGGGTGAAGC	.	98.0	16.0	126.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
MCHR1	2847	hgsc.bcm.edu	hg19	22	41076973	41076973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MCHR1	NM_005297	exon2	c.A310T	p.S104C	ACGGGGAGCATCT	.	89.0	12.0	81.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46790151	46790151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CELSR1	NM_014246	exon14	c.T5852A	p.L1951H	CACGGAAGGTCGA	.	60.0	10.0	68.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66838463	66838463	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GRIP1	NM_001178074	exon12	c.1433delT	p.I478fs	.	.	106.0	22.0	118.0	0.0	.	106	.	0.207547	0	none	.	.	PASS	Atlas-INDEL
SH3BP4	23677	hgsc.bcm.edu	hg19	2	235962373	235962373	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SH3BP4	NM_014521	exon6	c.2804delT	p.L935fs	.	.	163.0	34.0	247.0	0.0	.	109	.	0.208589	0	none	.	.	PASS	Atlas-INDEL
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70451754	70451755	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LMBRD1	NM_018368	exon6	c.489_490insTT	p.L163fs	.	.	90.0	14.0	95.0	0.0	.	61	.	0.155556	0	none	.	.	PASS	Atlas-INDEL
TPBG	7162	hgsc.bcm.edu	hg19	6	83075159	83075159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TPBG	NM_001166392	exon2	c.480delC	p.F160fs	.	.	204.0	31.0	245.0	0.0	.	37	.	0.151961	0	none	.	.	PASS	Atlas-INDEL
F10	2159	hgsc.bcm.edu	hg19	13	113803360	113803360	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	F10	NM_000504	exon8	c.995delT	p.I332fs	.	.	191.0	28.0	174.0	0.0	.	53	.	0.146597	0	none	.	.	PASS	Atlas-INDEL
CNOT1	23019	hgsc.bcm.edu	hg19	16	58633189	58633190	+	Frame_Shift_Ins	INS	-	-	CCAC	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CNOT1	NM_001265612	exon2	c.53_54insGTGG	p.D18fs	.	.	121.0	25.0	95.0	0.0	.	359	.	0.206612	0	none	.	.	PASS	Atlas-INDEL
SCN11A	11280	hgsc.bcm.edu	hg19	3	38891987	38891988	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN11A	NM_014139	exon25	c.4312_4313del	p.1438_1438del	.	.	136.0	39.0	121.0	0.0	.	296	.	0.286765	0	none	.	.	PASS	Atlas-INDEL
FANCM	57697	hgsc.bcm.edu	hg19	14	45667882	45667882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FANCM	NM_020937	exon22	c.5751delC	p.S1917fs	.	.	107.0	22.0	126.0	0.0	.	225	.	0.205607	0	none	.	.	PASS	Atlas-INDEL
DCLK1	9201	hgsc.bcm.edu	hg19	13	36382392	36382396	+	Frame_Shift_Del	DEL	GGAGA	GGAGA	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GGAGA	GGAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DCLK1	NM_004734	exon14	c.1829_1833del	p.610_611del	.	.	175.0	35.0	170.0	0.0	.	350	.	0.2	0	none	.	.	PASS	Atlas-INDEL
SRCAP	10847	hgsc.bcm.edu	hg19	16	30723210	30723210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRCAP	NM_006662	exon12	c.1546delG	p.E516fs	.	.	78.0	13.0	73.0	0.0	.	298	.	0.166667	0	none	.	.	PASS	Atlas-INDEL
CABS1	85438	hgsc.bcm.edu	hg19	4	71201158	71201158	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.,1	CABS1	NM_033122	exon1	c.401delA	p.D134fs	.	.	116.0	23.0	95.0	0.0	.	75	.	0.198276	0	none	.	.	PASS	Atlas-INDEL
