Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DOCK7	85440	hgsc.bcm.edu	hg19	1	63119731	63119731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	DOCK7	NM_001271999	exon3	c.T244C	p.F82L	GAGGAAATTCAAT	.	85.0	27.0	83.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150131515	150131515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PLEKHO1	NM_016274	exon6	c.C1027A	p.P343T	CGGTCTCCGCCGG	.	127.0	19.0	132.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf61	285051	hgsc.bcm.edu	hg19	2	47382353	47382353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	C2orf61	NM_173649	exon1	c.T38C	p.I13T	TCCCTTATTGAGG	.	100.0	31.0	118.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF2	7549	hgsc.bcm.edu	hg19	2	95847510	95847510	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF2	NM_021088	exon5	c.C937G	p.P313A	AGGAAGCCTTATG	.	153.0	53.0	168.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
PGAP1	80055	hgsc.bcm.edu	hg19	2	197750195	197750195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PGAP1	NM_024989	exon12	c.C1225A	p.Q409K	CCCCTTGCAGGCT	.	71.0	5.0	105.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
TPRG1	285386	hgsc.bcm.edu	hg19	3	188925189	188925189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TPRG1	NM_198485	exon2	c.A16G	p.S6G	ATTGGGAGTTTTG	.	149.0	23.0	132.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195490958	195490958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MUC4	NM_018406	exon11	c.C14002T	p.R4668W	GGGGCCGCCTCTG	.	210.0	10.0	330.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	hg19	4	68534339	68534339	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	UBA6	NM_018227	exon9	c.A723G	p.T241T	TTGTCCTGTCTCC	.	94.0	5.0	76.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
ASIC5	51802	hgsc.bcm.edu	hg19	4	156784757	156784757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_017419	exon2	c.C190T	p.L64F	ACCAGAGCACCCT	.	149.0	56.0	144.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BTN2A2	10385	hgsc.bcm.edu	hg19	6	26384118	26384118	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	BTN2A2	NM_181531	exon2	c.T69C	p.L23L	CCTCCTTCTCAGC	.	143.0	10.0	148.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33400480	33400480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SYNGAP1	NM_006772	exon5	c.C406T	p.R136W	AGCCGACGGCTAA	.	54.0	16.0	59.0	0.0	.	202	.	.	.	none	.	.	PASS	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	161026202	161026202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LPA	NM_005577	exon19	c.T2821C	p.Y941H	CGTGGTAGCACTC	.	55.0	32.0	66.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
TAX1BP1	8887	hgsc.bcm.edu	hg19	7	27856559	27856559	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TAX1BP1	NM_006024	exon15	c.A1987T	p.R663X	CCTGTCAGAGTCC	.	74.0	44.0	31.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	hg19	7	63538777	63538777	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	ZNF727,NS,carcinoma,0,1	ZNF727	NM_001159522	exon4	c.G1350A	p.K450K	AGAGAAGCCCTAC	.	95.0	5.0	54.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82581494	82581494	+	Missense_Mutation	SNP	T	T	A	rs78195222	bycluster	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	Q9Y6V0-3,rectum,carcinoma,0,15	PCLO	NM_014510	exon5	c.A8775T	p.E2925D	TTCATCTTCTATT	.	90.0	11.0	40.0	1.0	.	1506	.	.	.	weak	T|0.500;A|0.500	0.500	PASS	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33319097	33319097	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	NFX1	NM_147134	exon9	c.C1878T	p.C626C	AGTGTGCGGCAAG	.	96.0	4.0	97.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133948708	133948708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LAMC3	NM_006059	exon20	c.G3494A	p.S1165N	CCAGGAGGTGAGT	.	17.0	7.0	55.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	hg19	10	24873803	24873803	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARHGAP21	NM_020824	exon26	c.A5415G	p.G1805G	GTGCCCTCCTAGT	.	86.0	32.0	77.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP1	392	hgsc.bcm.edu	hg19	11	46702650	46702650	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	ARHGAP1,NS,carcinoma,0,1	ARHGAP1	NM_004308	exon7	c.C546T	p.F182F	CTGCCCGAACTTG	.	58.0	5.0	106.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62296065	62296065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	AHNAK	NM_001620	exon5	c.G5824A	p.V1942M	CCGACACATCCAC	.	188.0	14.0	194.0	0.0	.	532	.	.	.	none	.	.	PASS	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66636384	66636384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PC	NM_000920	exon9	c.A955G	p.K319E	AGTGCTTGCCGTG	.	190.0	65.0	336.0	1.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825248	95825248	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MAML2	NM_032427	exon2	c.G1947A	p.Q649Q	CTGCTGCTGCTGC	.	139.0	25.0	80.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	140.0	28.0	75.0	1.0	.	94	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC6A12	6539	hgsc.bcm.edu	hg19	12	306024	306024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SLC6A12	NM_001122848	exon11	c.T1100C	p.F367S	TTGGGGAAGGCGA	.	85.0	24.0	116.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT9	50614	hgsc.bcm.edu	hg19	12	132834320	132834320	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GALNT9	NM_001122636	exon5	c.C867T	p.N289N	GGCGGCGTTCGCA	.	72.0	18.0	95.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GPR12	2835	hgsc.bcm.edu	hg19	13	27332981	27332981	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GPR12	NM_005288	exon2	c.G984A	p.A328A	CGAGCGCGCTCTC	.	127.0	56.0	155.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32823745	32823745	+	Missense_Mutation	SNP	G	G	T	rs372186855	alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FRY	NM_023037	exon49	c.G7091T	p.R2364L	TCACCCGGAGCAC	.	77.0	4.0	67.0	0.0	.	312	.	.	.	alt	.	.	PASS	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45564665	45564665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PRPF39	NM_017922	exon2	c.G223A	p.A75T	ACAGAAGCAAATT	.	55.0	23.0	52.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75673957	75673957	+	Silent	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A	NM_001145358	exon18	c.A3285T	p.A1095A	TACCTCTGCTTCC	.	170.0	77.0	152.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75673982	75673982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A	NM_001145358	exon18	c.A3260T	p.E1087V	GAATTCTCCTCTT	.	173.0	75.0	169.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
FA2H	79152	hgsc.bcm.edu	hg19	16	74750468	74750468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FA2H	NM_024306	exon6	c.C816G	p.F272L	AGGGGGGAAGACC	.	39.0	16.0	34.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	hg19	17	1630052	1630052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	WDR81	NM_001163809	exon1	c.C1799T	p.P600L	TTGCCCCCGAGCC	.	35.0	20.0	19.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	hg19	17	4445767	4445767	+	Missense_Mutation	SNP	G	G	T	rs200492249	by1000genomes;alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MYBBP1A	NM_014520	exon22	c.C3079A	p.R1027S	GATGACGGGGCCG	.	149.0	48.0	116.0	0.0	.	69	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster;byhapmap	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CDC27	NM_001114091	exon7	c.C724T	p.P242S	TATCAGGTGAAAT	.	49.0	4.0	45.0	0.0	.	337	.	.	.	weak	G|1.000;|0.000	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833457	56833457	+	Silent	SNP	G	G	C	rs74256772		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G99C	p.P33P	GGAGCCGGAACCC	.	34.0	3.0	44.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16977317	16977317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3B	NM_015260	exon13	c.G1852T	p.A618S	ACCAAGGCCCTGC	.	116.0	5.0	164.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	hg19	19	52877551	52877551	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF880	NM_001145434	exon3	c.140-1G>A	.	TAAATAGGAATCT	.	78.0	11.0	58.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53114044	53114044	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TSPYL2	NM_022117	exon3	c.C993A	p.R331R	CAACCGCTCAGGT	.	60.0	56.0	75.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
HOXD8	3234	hgsc.bcm.edu	hg19	2	176996164	176996165	+	Frame_Shift_Ins	INS	-	-	CCCTAGCCCT	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	HOXD8	NM_019558	exon2	c.697_698insCCCTAGCCCT	p.A233fs	.	.	52.0	11.0	87.0	0.0	.	24	.	0.211538	0	none	.	.	PASS	Atlas-Indel,Pindel
LAMTOR5	10542	hgsc.bcm.edu	hg19	1	110950347	110950347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_006402	exon1	c.143delC	p.A48fs	.	.	216.0	42.0	297.0	0.0	.	.	.	0.194	.	none	.	.	PASS	Pindel
TAF15	8148	hgsc.bcm.edu	hg19	17	34171711	34171755	+	In_Frame_Del	DEL	GGCTATGGAGGAGACCGAGGAGGTGGCTATGGAGGAGATCGAGGT	GGCTATGGAGGAGACCGAGGAGGTGGCTATGGAGGAGATCGAGGT	-	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	GGCTATGGAGGAGACCGAGGAGGTGGCTATGGAGGAGATCGAGGT	GGCTATGGAGGAGACCGAGGAGGTGGCTATGGAGGAGATCGAGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TAF15	NM_139215	exon15	c.1407_1451del	p.469_484del	.	.	68.0	10.0	53.0	0.0	.	46	.	0.147	.	none	.	.	PASS	Pindel
