Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
EPHA8	2046	hgsc.bcm.edu	hg19	1	22902757	22902757	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	EPHA8	NM_020526	exon3	c.G207A	p.T69T	CCACACGTACCAG	.	234.0	51.0	301.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
ERI3	79033	hgsc.bcm.edu	hg19	1	44778900	44778900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	ERI3	NM_024066	exon5	c.C607T	p.L203F	CGGTGAGCTGAAA	.	113.0	27.0	139.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154680665	154680665	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	KCNN3,NS,carcinoma,0,1	KCNN3	NM_001204087	exon9	c.G2028A	p.S676S	CAGCTTCGACTCC	.	111.0	31.0	146.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166246020	166246020	+	Missense_Mutation	SNP	C	C	T	rs367833365		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	SCN2A	NM_001040143	exon26	c.C5704T	p.R1902C	TTGAAACGCAAAC	.	205.0	39.0	212.0	0.0	.	589	.	.	.	weak	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170003429	170003429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	LRP2	NM_004525	exon69	c.G12631A	p.E4211K	CAGACTCGATTTT	.	195.0	42.0	200.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179473456	179473456	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	TTN	NM_001267550	exon274	c.T52282A	p.C17428S	ATTTGCAATGTCT	.	103.0	24.0	120.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
NSUN3	63899	hgsc.bcm.edu	hg19	3	93845254	93845254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	NSUN3	NM_022072	exon6	c.G943T	p.V315L	CTCTTAGTGATTC	.	173.0	19.0	185.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38781879	38781879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	DNAH8	NM_001206927	exon25	c.G3307A	p.E1103K	AAAAGTGAAGTAC	.	118.0	5.0	130.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	hg19	7	2645529	2645529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	IQCE	NM_152558	exon20	c.T1763C	p.V588A	CCCGCGTTCCGAG	.	53.0	8.0	160.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82544315	82544315	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	PCLO	NM_014510	exon7	c.T12987C	p.S4329S	TGCATGACTAAAG	.	199.0	56.0	176.0	0.0	.	1506	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFB6	4712	hgsc.bcm.edu	hg19	9	32571048	32571048	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	NDUFB6	NM_182739	exon2	c.C183A	p.V61V	CCCATGGACCTGG	.	130.0	28.0	147.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SECISBP2	79048	hgsc.bcm.edu	hg19	9	91964729	91964729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	SECISBP2	NM_024077	exon13	c.G1777A	p.V593I	CCTTCGGTTGAGG	.	179.0	31.0	192.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1372211	1372211	+	Silent	SNP	T	T	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	ERC1	NM_178040	exon14	c.T2499A	p.R833R	TCTCCGTAAGAAG	.	52.0	9.0	80.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT6	11226	hgsc.bcm.edu	hg19	12	51757995	51757995	+	Missense_Mutation	SNP	C	C	G	rs138580901	bycluster;byfrequency;alternate_allele	TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	GALNT6	NM_007210	exon6	c.G959C	p.R320P	TTGCCTCGGCTAT	.	237.0	52.0	307.0	0.0	.	63	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112605266	112605266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	.	NM_001109662	exon72	c.G11987A	p.G3996E	GCAATCCCCAGCA	.	89.0	23.0	93.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129180556	129180556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	TMEM132C	NM_001136103	exon7	c.G1837A	p.A613T	CTGGTGGCAGACT	.	128.0	30.0	128.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29675028	29675028	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	MTUS2	NM_001033602	exon3	c.C2595T	p.V865V	CTTTGTCCGGAGC	.	71.0	18.0	62.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP4	9325	hgsc.bcm.edu	hg19	15	64702014	64702014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	TRIP4	NM_016213	exon7	c.G1030C	p.E344Q	CTAGCAGAGTATC	.	45.0	15.0	44.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7734797	7734797	+	Silent	SNP	C	C	G	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	DNAH2	NM_020877	exon80	c.C12549G	p.S4183S	CCCCTCCCCCCTC	.	133.0	33.0	138.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
PIPOX	51268	hgsc.bcm.edu	hg19	17	27379969	27379969	+	Missense_Mutation	SNP	G	G	C	rs58011977	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	PIPOX	NM_016518	exon3	c.G295C	p.E99Q	ATGAAAGAGAATC	.	165.0	22.0	148.0	0.0	.	42	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
CETN1	1068	hgsc.bcm.edu	hg19	18	580595	580595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	CETN1,NS,carcinoma,0,1	CETN1	NM_004066	exon1	c.G187A	p.E63K	GGCTTCGAACCCA	.	83.0	25.0	89.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2937962	2937962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	LPIN2	NM_014646	exon7	c.G896T	p.R299L	ATTACCCGAAAAT	.	100.0	4.0	93.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
PAF1	54623	hgsc.bcm.edu	hg19	19	39879309	39879309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	PAF1	NM_019088	exon10	c.A748G	p.M250V	CATCCATCATGCC	.	254.0	46.0	307.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41063170	41063170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	SPTBN4	NM_020971	exon26	c.G5531A	p.R1844Q	ACGCCCGAGAGCT	.	38.0	8.0	84.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.,1	HRC	NM_002152	exon1	c.A606G	p.E202E	CTCCTCTTCCTCC	.	227.0	19.0	231.0	2.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56320200	56320200	+	Missense_Mutation	SNP	C	C	G	rs16986626	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	NLRP11	NM_145007	exon5	c.G1776C	p.R592S	AAGTGTCCTCAGG	.	138.0	31.0	128.0	0.0	.	139	.	.	.	alt	C|0.890;N|0.000	.	PASS	Atlas-SNP
ASIP	434	hgsc.bcm.edu	hg19	20	32856797	32856797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	ASIP	NM_001672	exon3	c.A223G	p.K75E	ACGCAGAAGGAGG	.	39.0	8.0	81.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP10-5	386680	hgsc.bcm.edu	hg19	21	45999772	45999772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	KRTAP10-5,NS,carcinoma,0,2	KRTAP10-5	NM_198694	exon1	c.A684G	p.I228M	CCTGCATATGGGG	.	62.0	3.0	73.0	1.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24720193	24720193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	SPECC1L	NM_001145468	exon5	c.G1944T	p.E648D	GGTAGAGGATGAA	.	86.0	4.0	80.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
SULT1C4	27233	hgsc.bcm.edu	hg19	2	109003803	109003804	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-B1-A47O-01A-11D-A25F-10	TCGA-B1-A47O-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca2b9fe2-97e0-4d4f-afd7-a5acf638800f	c023a62c-e498-4e1e-be91-99cf6d7b0708	.	SULT1C4	NM_006588	exon7	c.824_825insCA	p.F275fs	.	.	124.0	25.0	116.0	0.0	.	41	.	0.201613	0	none	.	.	PASS	Atlas-Indel,Pindel
